G29241 (ist1)


Basic Information

Item Value
gene id G29241
gene name ist1
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 22997702 ~ 23001049 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU38852
cttacCAGCTTCCAGTTCCAAATAatcttttattaaatttttgttttagtatacagtggaaaaaaaactcattttttGCAACAAGACACCATTTTGTGTCTCAAtgtttatcatgaaagaacaatCCAACATAGAAAAGACAGTGATCAGATCACAGTTCTGTAGTGTTAATAATCTCTCCCTCTACTTTATCCAACATATGTAAAACATATCAATAAACTGAGTCTATCACCCAGCTGGAAAGCTTTTTAATTCGCTTTCCAGAGATTGCTGAATCATGTTATTCAAGGCCATCGTCCATTTGCCATGCAAGCAGAGCTGGGTGGGGTTAGGTTGCAGCGACGCGTCACGTCTGTATGTCAACAAAACCTTGGACCTTGTGGAGAAATGTTTCCCATTTCTCCACAAGAAATAGAAACATCGACCTCTATTGCCAGTACAGGTGTTTTTTCATCAAATACACAAATTTCAACTTAACAGGTTTTTAGAGAATTGCGTTTGGGCAAAGCTAATAAAGCAAAGTGTAATCTAATCCATAATAATACAGACTGGCAAGGCATCCAATGAGAAATGGTGACTAAGGCAAATGCAGTGGTGTTGCACATACAGAAtaagacacatgcacacacgatCACAGAGGACTAAACCAACTGATCAATATTTAtatcaaatcaatcaaataaGGTTGCTGTGTGGCTGCTCATGTCTGCACACATTTTGCTTGTAAATTAAGTACTTTAACAATAAGAAGGTGCATGTATTTGAAAAGACTGACATTCaaaggggcaaaaaaaaaaaaaaaacctttatttggagatactgtatataaaaaccAGATTTGTCAAATATGGACAACTCCCTACTACCAAACTTTATGCTTTACAGTTCAATCTTTCCTGTAAATAGGTCTATATATcgttattgtattatattacaGATTTCCATACACTATACCCCTGTAACAGGTTTGACATGTGTCCCCATGAGCTTTTCCTGAAGAGCTCATACACCCCTTTTTTCTAGTATAAATAAACCTTGAAGAGAGGGTTTTAAAACATCATTTCCACAGTGACAAAACTGCATGACTGCGCAAGACACTGAAAATATGGCTTCCATCAGTCCGATACCTTTATGCAAAGAAAATTGTTGTGTATTGTGCCCTTAGCTCAGAAATTATCTCTAGCCTTTGTTACCGTGAACGGCAGCTTCTCATCAAACTGGGGCGGCCAGTCGGGCCTGTTTGACTAGTCTGAGACAGAACTGAGTGACACAGTGCGAAGTCAAATCAAggcatgtactgtaaatattcGTCAGACCCAAAAAGTCCCCtggaaaaacaattaaaatctaAATTAGGTTATATAGTAGATCACACAGACAAATTGGAAACGTTAAAAGTCAGTGTAACCTTAAATGAGAAGGAGTGAACAGCAGCCGACACCCACGTGATTGCATGTAAGAATATAGATTATGTGCCCTGTagaaagaaattaaaacatGTGGCAGTCACTGGTACTGCCAACTGAAATGAGAATTCTGTTAACTGACAAGTTCATAATTATACAAATGAGGTAAGAATACATATTTGTTTAATATCTATTTAAGATTACTTCACCGTGGAAGGTGGAGAACTATCCAAATCGGATTCATAGCCTTGAACttgttttccatttcctgttcTGAGCTGCGTAGATGATGgcacaggcctgtgtgtgtatgtgtgtgtatgtgtatgtgtgtgtgtatatgtgtgtgtgtgtagaccagGGATATAGCAATTAGGtcttcttcttcagctcctcgaACCGCCGCGTTAAGTCGTCAAAATCAATGTCATCCGAGTTTGTGGCGTTTCTGCCGAAGGAGGATGTGGGGAGTGTGTCGGGAACAGAGGGGAGTTCTGGGAGAGCGTTGTTGTCAAATAGGCCGGGACCTGGAGCAGACTCGTATGTGGGGGGACATGAGGGCAGCTGAGGGGGCAGCCCTCCTCCCATGGGGTGCTGGAAGTCATTGTAGGTTCCAACTGGAGCATTATACGGTTCCTGGAGGAAAACAACAGTCAGGTAcaagtcagagggaggcagtaGACTACTGTAAATGCATAATTCTCCTCTCTTTTAGGATAAGAAAAGTACAATTGTTTTTTGAGATCATACATCACATTTTGGGCACCATCATCGCTGGTAAATCTACATCTTTCACACATC

Function

symbol description
ist1 Acts upstream of or within axon extension and endosome organization. Predicted to be located in nuclear envelope. Is expressed in female organism. Orthologous to human IST1 (IST1 factor associated with ESCRT-III).

NR:

description
PREDICTED: IST1 homolog isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU38852 True 2207 lncRNA 0.40 2 22997702 23001049

Neighbor

gene id symbol gene type direction distance location
LOC120555841 LOC102215785,LOC102786096,LOC101482767,LOC104919260 coding upstream 37299 22945044 ~ 22960403 (+)
sult5a1 NA coding upstream 68036 22923824 ~ 22929666 (+)
slc22a31 slc22a31 coding upstream 86424 22896342 ~ 22911278 (+)
cdh15 cdh15 coding upstream 245761 22713300 ~ 22751941 (+)
acsf3 acsf3 coding upstream 285768 22669904 ~ 22711934 (+)
mcee mcee coding downstream 11550 23012599 ~ 23014909 (+)
mettl15 mettl15 coding downstream 104172 23105221 ~ 23158790 (+)
lgr4 lgr4 coding downstream 218140 23219189 ~ 23254585 (+)
slc39a13 slc39a13 coding downstream 327561 23328610 ~ 23343208 (+)
tmem276b LOC104919254,LOC101064922,LOC103364365,LOC104940771,LOC103378694 coding downstream 344438 23345487 ~ 23354201 (+)
G29176 NA non-coding upstream 244057 22752468 ~ 22753645 (+)
G29139 NA non-coding upstream 396143 22548700 ~ 22601559 (+)
G29135 galns non-coding upstream 462834 22533942 ~ 22534868 (+)
G29101 NA non-coding upstream 589463 22407966 ~ 22408239 (+)
G29085 NA non-coding upstream 629199 22368129 ~ 22368503 (+)
G29243 mphosph10 non-coding downstream 3829 23004878 ~ 23007982 (+)
G29228 LOC100136564,LOC104919244,LOC103365615 non-coding downstream 14983 23016032 ~ 23019378 (+)
G29262 NA non-coding downstream 20380 23021429 ~ 23024754 (+)
G29271 NA non-coding downstream 44244 23045293 ~ 23089580 (+)
G29288 NA non-coding downstream 158902 23159951 ~ 23160396 (+)
LOC120555548 LOC103365626,LOC104942698 other upstream 3538 22981783 ~ 22994164 (+)
ankrd11 ankrd11 other upstream 102695 22764719 ~ 22895007 (+)
gpc5a gpc5,LOC103365231 other upstream 1125677 21720034 ~ 21872025 (+)
dcun1d2b dcun1d2,LOC102792160 other upstream 1393796 21596331 ~ 21603906 (+)
tpp2 tpp2 other upstream 1434888 21525592 ~ 21562814 (+)
G29292 NA other downstream 135683 23136732 ~ 23137027 (+)
igdcc3 igdcc3 other downstream 442100 23443149 ~ 23517263 (+)
G29433 NA other downstream 725963 23727012 ~ 23732471 (+)
plekha7b NA other downstream 1234674 24235723 ~ 24314645 (+)
sox6 sox6,LOC103363464 other downstream 1319015 24320064 ~ 24455688 (+)

Expression


Co-expression Network