G29323 (mybpc3)


Basic Information

Item Value
gene id G29323
gene name mybpc3
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 23286897 ~ 23294407 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU38953
ATCATGTGTTGGGGCAGCGGTCTGGTCCTCTGTGGGTGCTGCTGCAGGCGGAGCAGGAGCCTGTTCTGGTTCTACACCGGACTCCCCAGGTGCATCAGCAGGCCCCTCAGCTGTGTTCCCTGGCTTTGAAACAACCTTCAGGTCAaacttgacctttgaccccccaGCTATCACCGCGTAGACATTGGCATCTTCCTTGGTAATAGCTTTTATAGCGAGGTAGTGCTTGTTTCCGTCGGCTGTGATCACATATTTGTCGCCACTGGCAATGTCCTTTGAGTTGCACTGCCATTTTACTTTAGCATCAGGCTTCTCTGTTTCTGCTTCATAGACCACAGAGGACCCCTCCTCTGCCTCCTGAGTCTTTGGTTTCTTGGCAAATGCTGAAACTGTTTTTGACTGGCTCTGGCATCCTGAATGATGTCCTCTCCTCCACAGTGTGACTCACCCAAACAGTCTGCCGTCTATCTCAACCCCGTGCCTTTAATAGTCCTGTTGATTCCAAAAAGCACCCTCtccccgcctcctcctccttcatgAACC

Function

symbol description
mybpc3 Predicted to enable myosin heavy chain binding activity. Acts upstream of or within cardiac chamber morphogenesis and regulation of heart rate. Is expressed in anterior macula; heart rudiment; musculature system; pericardial region; and trunk. Human ortholog(s) of this gene implicated in familial hypertrophic cardiomyopathy; hypertrophic cardiomyopathy; and hypertrophic cardiomyopathy 4. Orthologous to human MYBPC3 (myosin binding protein C3).

NR:

description
histone-lysine N-methyltransferase KMT5B-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU38953 True 543 lncRNA 0.52 3 23286897 23294407

Neighbor

gene id symbol gene type direction distance location
lgr4 lgr4 coding upstream 32312 23219189 ~ 23254585 (+)
mettl15 mettl15 coding upstream 128107 23105221 ~ 23158790 (+)
mcee mcee coding upstream 271988 23012599 ~ 23014909 (+)
LOC120555841 LOC102215785,LOC102786096,LOC101482767,LOC104919260 coding upstream 326494 22945044 ~ 22960403 (+)
sult5a1 NA coding upstream 357231 22923824 ~ 22929666 (+)
slc39a13 slc39a13 coding downstream 34203 23328610 ~ 23343208 (+)
tmem276b LOC104919254,LOC101064922,LOC103364365,LOC104940771,LOC103378694 coding downstream 51080 23345487 ~ 23354201 (+)
LOC120556218 cilp coding downstream 255785 23550192 ~ 23568550 (+)
terb2 NA coding downstream 573547 23867954 ~ 23870221 (+)
sord sord coding downstream 576650 23871057 ~ 23875520 (+)
G29294 NA non-coding upstream 125980 23160593 ~ 23160917 (+)
G29288 NA non-coding upstream 126501 23159951 ~ 23160396 (+)
G29271 NA non-coding upstream 197317 23045293 ~ 23089580 (+)
G29262 NA non-coding upstream 262143 23021429 ~ 23024754 (+)
G29228 LOC100136564,LOC104919244,LOC103365615 non-coding upstream 267519 23016032 ~ 23019378 (+)
LOC120555420 LOC104940778 non-coding downstream 74773 23369180 ~ 23374096 (+)
G29378 NA non-coding downstream 124304 23418711 ~ 23421738 (+)
G29410 NA non-coding downstream 302045 23596452 ~ 23599696 (+)
G29411 NA non-coding downstream 306094 23600501 ~ 23600768 (+)
G29421 NA non-coding downstream 321189 23615596 ~ 23616946 (+)
G29292 NA other upstream 149870 23136732 ~ 23137027 (+)
LOC120555548 LOC103365626,LOC104942698 other upstream 292733 22981783 ~ 22994164 (+)
ankrd11 ankrd11 other upstream 391890 22764719 ~ 22895007 (+)
gpc5a gpc5,LOC103365231 other upstream 1414872 21720034 ~ 21872025 (+)
dcun1d2b dcun1d2,LOC102792160 other upstream 1682991 21596331 ~ 21603906 (+)
igdcc3 igdcc3 other downstream 148742 23443149 ~ 23517263 (+)
G29433 NA other downstream 432605 23727012 ~ 23732471 (+)
plekha7b NA other downstream 941316 24235723 ~ 24314645 (+)
sox6 sox6,LOC103363464 other downstream 1025657 24320064 ~ 24455688 (+)
pkd1l2a vat1l,pkd1l2,LOC102776808 other downstream 2561432 25855839 ~ 25883360 (+)

Expression


Co-expression Network