G29378


Basic Information

Item Value
gene id G29378
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 23418711 ~ 23421738 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU39015
GTCCGATACTTATATTTACCTCAATGTTAAATATGTATCTGACACATTGAAATAACCAATGTAGCCCTCTAAATTTGTCCCACCTTACTTTTCTCAAACTTCTTGACCCAAATACTGAAGGCCACAAATGTTGTATTTCTGTAGAAAATACATATTCTGAATCTCACTTCCTCTTTGTAGAACCATGTATTCTTGTTCTGGATATAAATTGTGTAACGCTGCCAACAGTACCACAGTTAGTCACTGGTTGCACTGTAAAAATGCTGAGTAGTCAACTGACGGCCACTTGACACTTTTCTGTTACACTTACCTGTTTCTTTTCTCCATCTTTGTCATCTACATAAGACAACACAAAGTCTATCCTCCGAACTCCGTCCCTGAAGAACACGGTGTCTGTGTTTGGTTGTAGCTTTTCGGTCTCAaggagaaacaaacaaacacaataagACTTTTAGTTTTCTCACAGAGTGGGAACTGAAAGCAAAGAGACATGTAATACTTGAACAATAAATACTGACAAAGCAAGAAATGAATCTTGAAGACAGACGTAAAAGGCTTAACACttatagatatacagtatgacaCATACGGAGAAGCACATTGTGTCCCATAATTATACATGTAATTTAGGTTACTATAGCTTACTAACTAGTACTAGTAGTAGGCATTCACGGTGCACAGGACTGAAAAGTTCAAGAGAATGTTGTTTCCTTGGGAAAAAGTTAAGAGGGAGGCCATGATGACAGTAAAAGAAcccacagaaaaacagaaaaatcctGGACGTGGTACAATCACAGCCTGTCATTATACCAAAATAGTTGATGGTGGAGCGAGAAATGTGCTCTACATGTTCTATATCAACTTTTGTATTTCACTCATTGTCTTAACTCCTAAAGTACAACTTCTTTGACactagatgtttttttttttcattaatgtggaaatgtgttttattgacaCTAATAACATGTATGGTCAACAGCACTCTCGCTGGAAATACTCAAATGAATggataaaaagataaaaagataTAAGATCAAGTAATCTACAGTATGTGCTATACTGTAATCAGTGTCTACaacagtgttgtgcctgaacgcgttcattgaacgatagttcatgaactcgttcatattttgggcgaacgtgaactgaacgtactgtattactgcctgatgaacgatactgtgaactcgttcattctggtgtctgtgaacggcacactctctcagtttaactttgttcaatagggtgccagatttttatagagccttccaggcgaaaacccggctaaaaaacaccgtaaacaggccttaatatgtagtggaaaaaacacccaatctggcaacaccagccaccagtgtcgcaccgccgcatgcgtcatcaaaacaaaaagcagcatgtagcaaggaggcgtcgtatgatcatttaaacaagttttatgacaaggtcggtgaggatgggaaaaaaagaaaatccgcacttcagtcacatccacagcaaacctgaaacggcacaatgaactgaagcaacatatgaaaaaaaagaactatgaagtagttcatttttggaactgtgaaattagttcaaaattttgaagtatgaactatgaactgaactagtcatttttaaatttatgaactgaactttgaactagttcatgtagaaagtgaactttcccaacactggtctacaatatacagtatatgtcttTATTTGTAGTGCTGTATTGTGGTTACAGTATTGTGGATTAATACATCAATATGTATCTCATAACCTTTAACAAACCTGGAATTTAAGATATGACTGTTTTCATTACCATACATTTTCTTGTAACAAACATGAGTTTGTAGACACTAGATAGAGTACAATCTGTACAATCTGTTTAATCTGAAGTTAAACAGGATTATTTTGATGACAGGAATGTACTAAAGTAAAATGGAAAACtttatttgaaatttgaaatgaaatgtattcttaaaaatgtcaatttgggcccctggttagctcacctggtaaagcgggtgcccatatatagaggtttgctccttgacgcagcgaccgcaggttcgactccaacctgcagccctttgctgcaggtcattccccctctctgtcccctttcaagtctaagctctcctatcaaaataaaggcctacaaatgcccaaaaaataatcttaaaAATTTCCCAGTCAGGTTTATGATGTCACTGTTTGCAGCCAAGAAAAGGAGTTGAAAAACATAAATTTTCCAGTTTGTTCATTTTGGAGTGGTGATATCTGTCTGTCATGTTTTCAGAAGGCCCGTCTTGTTCACAAATTAGTGACAAAGCATACCTAAAGAGCAACAATATAAAAGGGTTAACCACAGCAGTACCCAGTACGTTCAGTAGTTTACTGAACCACACCCTGCTGGTTTATCACGCCCTCACATCCACTAACAGACCCTCTTGTAACAGGGGCGTGAGCGCTGTTTGTTATACTGTTATTTAATCATGTTCGGACCTAATGAGAACATTGAAAACAGAAGTGTTTGATAGATTAGCACTGATCTATTCATGCACTGAATTCTAGAGTCATACATCACAGAAACACAATGTAATCAGTGTTATCAATTAAGATGATAAACCATCTGGCCGTTGGCCTCACTGTATCACTGAAATCCCAACAGACTGACAACAGGCTTCTGTTTGAACAGCAAACAGTTTATTTCTGTCTCATTGTTCGAGAAATGAGAGGAGACTCTGTGAGACTTAGAGGTCTTGTGACTCAGCGGTGAGTCGACAAAAGGTCAGTCATCTAAGCACACGATtttacacaaacataaacaatgaCATAAACAACTTTGTGGCTGCAAAAAAGCTTTGGAAAAATAACAAAAGCCAACTCCATGAAGACTGCTGAAACTCTTATATTGGACAGTTAATTTTAgattatgaaaatgttatttaacAAT

Function

NR:

description
calretinin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU39015 True 2956 lncRNA 0.38 2 23418711 23421738

Neighbor

gene id symbol gene type direction distance location
tmem276b LOC104919254,LOC101064922,LOC103364365,LOC104940771,LOC103378694 coding upstream 64510 23345487 ~ 23354201 (+)
slc39a13 slc39a13 coding upstream 75503 23328610 ~ 23343208 (+)
lgr4 lgr4 coding upstream 164126 23219189 ~ 23254585 (+)
mettl15 mettl15 coding upstream 259921 23105221 ~ 23158790 (+)
mcee mcee coding upstream 403802 23012599 ~ 23014909 (+)
LOC120556218 cilp coding downstream 128454 23550192 ~ 23568550 (+)
terb2 NA coding downstream 446216 23867954 ~ 23870221 (+)
sord sord coding downstream 449319 23871057 ~ 23875520 (+)
syt7b syt7,LOC101476086,LOC102796193,LOC100697404,LOC108250198,LOC103462425 coding downstream 548960 23970698 ~ 24071149 (+)
LOC120556108 cpsf7,LOC102795402 coding downstream 658911 24080649 ~ 24085815 (+)
LOC120555420 LOC104940778 non-coding upstream 44615 23369180 ~ 23374096 (+)
G29323 mybpc3 non-coding upstream 124304 23286897 ~ 23294407 (+)
G29294 NA non-coding upstream 257794 23160593 ~ 23160917 (+)
G29288 NA non-coding upstream 258315 23159951 ~ 23160396 (+)
G29271 NA non-coding upstream 329131 23045293 ~ 23089580 (+)
G29410 NA non-coding downstream 174714 23596452 ~ 23599696 (+)
G29411 NA non-coding downstream 178763 23600501 ~ 23600768 (+)
G29421 NA non-coding downstream 193858 23615596 ~ 23616946 (+)
G29432 NA non-coding downstream 299459 23721197 ~ 23722650 (+)
G29438 NA non-coding downstream 320967 23742705 ~ 23743889 (+)
G29292 NA other upstream 281684 23136732 ~ 23137027 (+)
LOC120555548 LOC103365626,LOC104942698 other upstream 424547 22981783 ~ 22994164 (+)
ankrd11 ankrd11 other upstream 523704 22764719 ~ 22895007 (+)
gpc5a gpc5,LOC103365231 other upstream 1546686 21720034 ~ 21872025 (+)
dcun1d2b dcun1d2,LOC102792160 other upstream 1814805 21596331 ~ 21603906 (+)
igdcc3 igdcc3 other downstream 21411 23443149 ~ 23517263 (+)
G29433 NA other downstream 305274 23727012 ~ 23732471 (+)
plekha7b NA other downstream 813985 24235723 ~ 24314645 (+)
sox6 sox6,LOC103363464 other downstream 898326 24320064 ~ 24455688 (+)
pkd1l2a vat1l,pkd1l2,LOC102776808 other downstream 2434101 25855839 ~ 25883360 (+)

Expression


Co-expression Network