Item | Value |
---|---|
gene id | sox6 |
gene name | sox6,LOC103363464 |
gene type | misc |
species | eurasian perch (Perca fluviatilis) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_053114.1 |
NCBI id | CM020911.1 |
chromosome length | 46923577 |
location | 24320064 ~ 24455688 (+) |
genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
symbol | description |
---|---|
sox6 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within adipose tissue development; muscle cell fate specification; and skeletal muscle tissue development. Predicted to be active in nucleus. Is expressed in fast muscle cell; myotome; pharyngeal arch 3-7; and somite. Human ortholog(s) of this gene implicated in high grade glioma. Orthologous to human SOX6 (SRY-box transcription factor 6). |
description |
---|
PREDICTED: transcription factor SOX-6 isoform X2 |
id | description |
---|---|
K09269 | SOX5_6_13; transcription factor SOX5/6/13 (SOX group D) |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TU39277 | False | 3504 | TUCP | 0.39 | 1 | 24451374 | 24454877 |
TU39278 | False | 4296 | lncRNA | 0.38 | 1 | 24451374 | 24455669 |
TU39279 | False | 437 | lncRNA | 0.38 | 1 | 24455233 | 24455669 |
TU39280 | False | 3920 | lncRNA | 0.38 | 1 | 24450958 | 24454877 |
TU39281 | False | 456 | lncRNA | 0.37 | 1 | 24455233 | 24455688 |
TU39283 | False | 3566 | TUCP | 0.39 | 1 | 24451312 | 24454877 |
XM_039795285.1 | False | 2892 | mRNA | 0.53 | 18 | 24321619 | 24450656 |
XM_039795287.1 | False | 2586 | mRNA | 0.54 | 17 | 24337179 | 24450656 |
XM_039795288.1 | False | 2453 | mRNA | 0.54 | 17 | 24320064 | 24450656 |
XM_039795289.1 | False | 2451 | mRNA | 0.54 | 17 | 24323681 | 24450656 |
XM_039795290.1 | True | 7815 | mRNA | 0.43 | 17 | 24321619 | 24455683 |
XM_039795291.1 | False | 2785 | mRNA | 0.53 | 17 | 24321619 | 24450656 |
XM_039795292.1 | False | 2737 | mRNA | 0.53 | 16 | 24321619 | 24450656 |
XM_039795293.1 | False | 2841 | mRNA | 0.53 | 17 | 24321619 | 24450656 |
XM_039795294.1 | False | 2472 | mRNA | 0.54 | 15 | 24358754 | 24450656 |
XM_039795295.1 | False | 2400 | mRNA | 0.54 | 16 | 24320066 | 24450656 |
XM_039795296.1 | False | 2404 | mRNA | 0.54 | 16 | 24323677 | 24450656 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
caprin1a | LOC103356992,LOC104943339 | coding | upstream | 97618 | 24206711 ~ 24222446 (+) |
ext2 | ext2 | coding | upstream | 170159 | 24127460 ~ 24149905 (+) |
dagla | dagla | coding | upstream | 194244 | 24093243 ~ 24125820 (+) |
LOC120556108 | cpsf7,LOC102795402 | coding | upstream | 234249 | 24080649 ~ 24085815 (+) |
syt7b | syt7,LOC101476086,LOC102796193,LOC100697404,LOC108250198,LOC103462425 | coding | upstream | 248915 | 23970698 ~ 24071149 (+) |
LOC120556334 | LOC104919371,LOC103363468,LOC104965174,LOC102308327 | coding | downstream | 161868 | 24617556 ~ 24621883 (+) |
copb1 | copb1 | coding | downstream | 232338 | 24688026 ~ 24700170 (+) |
rras2 | rras2 | coding | downstream | 247169 | 24702857 ~ 24737053 (+) |
tub | tub,LOC102789439 | coding | downstream | 282940 | 24738628 ~ 24787768 (+) |
ipo7 | ipo7 | coding | downstream | 728992 | 25184680 ~ 25200964 (+) |
G29535 | nucb2,LOC103363466,LOC101472988,LOC102310665,LOC105916282,LOC101163155,LOC107085590 | non-coding | upstream | 92148 | 24226851 ~ 24227916 (+) |
G29477 | NA | non-coding | upstream | 169309 | 24150510 ~ 24150755 (+) |
G29460 | NA | non-coding | upstream | 357732 | 23960107 ~ 23962332 (+) |
G29441 | NA | non-coding | upstream | 440622 | 23816706 ~ 23879442 (+) |
G29438 | NA | non-coding | upstream | 576175 | 23742705 ~ 23743889 (+) |
G29579 | NA | non-coding | downstream | 147294 | 24602982 ~ 24605198 (+) |
G29685 | NA | non-coding | downstream | 642482 | 25098170 ~ 25099593 (+) |
G29747 | NA | non-coding | downstream | 765358 | 25221046 ~ 25221437 (+) |
G29786 | eif4g2,LOC102309340 | non-coding | downstream | 962119 | 25417807 ~ 25420506 (+) |
G29787 | NA | non-coding | downstream | 969221 | 25424909 ~ 25426358 (+) |
plekha7b | NA | other | upstream | 5419 | 24235723 ~ 24314645 (+) |
G29433 | NA | other | upstream | 587593 | 23727012 ~ 23732471 (+) |
igdcc3 | igdcc3 | other | upstream | 802801 | 23443149 ~ 23517263 (+) |
G29292 | NA | other | upstream | 1183037 | 23136732 ~ 23137027 (+) |
LOC120555548 | LOC103365626,LOC104942698 | other | upstream | 1325900 | 22981783 ~ 22994164 (+) |
pkd1l2a | vat1l,pkd1l2,LOC102776808 | other | downstream | 1400151 | 25855839 ~ 25883360 (+) |
nfat5b | nfat5 | other | downstream | 1427766 | 25883454 ~ 25927726 (+) |
LOC120556198 | LOC103371916,LOC104965843 | other | downstream | 2840069 | 27295757 ~ 27316181 (+) |
nedd4a | nedd4,LOC103371920,LOC102785817 | other | downstream | 2862682 | 27318370 ~ 27351837 (+) |
LOC120555577 | NA | other | downstream | 2953352 | 27409040 ~ 27410250 (+) |