G30235 (cgnl1)


Basic Information

Item Value
gene id G30235
gene name cgnl1
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 27130176 ~ 27131908 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU40134
aaccattgggcatCGTGCTGCTTATAACTAGGACACTGacaatgtatgtgtattattattattttgtttttcaaacttTTCTTATTTTAGTCTGTAACGGATGACAAATGGACAATCGGATATTGTTTTTAGGCGTTCACCTGATCTCATTTTGCAGAGCTTTGAGCTGGCCATGGAGCTGCTCATTGGCCTCCTGTTGCTCATCCAGGTCTCTCTGCAGCTTCTTCTTGCTGTGCTCCAGTCGGTCGATCTCCTCCTCGGCCTCGTCCATCTGCCGTTTCAAGGCCTTTAGACGCAGATTCAATTGGTCCTTTTGATCTTGCAATGAGTTTTGTTCTTCTTCACCTTGCATCATCATCTCTTTAACCTTCCTTTCTAGCCTGCGGTTCACCAGCTGCAAGTTGGCACGCTCCCTTTCCTCCCCCTCCAGTCTCGCCTCCAGCTCCTGTATGCGATCCTCCAGCTGGGCTACCAGGCCCTCTTTGTTGGACTTGTGGGAGCCTTCTAAATAAGCCACTCTGCTCTTCAGGTCTTTGGTctgtctctccaAAGTCATCTTGTCACACTCCAGGTCCTGTCTGCTAGCCCTCTCCTGCAGGAGTTCATTCCTCATCTGCTCCACCTGTCAAGCCGAGTCCAGACACTGTCATTGCTACGGTCCCACACAGTCTGATGACAATTATTATCTGATACGGTCTCACCCACACCAGAAACCACTGTAGCGCTCAGTCGCTCAAAACGCTAAACAATAGAAGACTTAATGCTGAAAGGGCCTCAGCTAATTAGTCAGCTGGATTTTCTTGtttggctgcattccacttttTGTTGCTCTCCCAGTGACACAGAGTTGtagtaaaaacatgttaaaataaatCGATGCCAGTAGTTTCTGTAAAAAAAGATATCTAGCTGTGGGCTTTTAGACGaacatattattaaaataata

Function

symbol description
cgnl1 Predicted to enable cytoskeletal motor activity. Predicted to be part of myosin complex. Orthologous to human CGNL1 (cingulin like 1).

NR:

description
PREDICTED: cingulin-like protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU40134 True 946 lncRNA 0.46 4 27130176 27131908

Neighbor

gene id symbol gene type direction distance location
aldh1a2 aldh1a2 coding upstream 64288 27039505 ~ 27065888 (+)
adam10a adam10 coding upstream 128740 26969366 ~ 27001436 (+)
sltm sltm coding upstream 185582 26930828 ~ 26944594 (+)
myo1ea myo1e,LOC103362848 coding upstream 238914 26841121 ~ 26891262 (+)
LOC120555610 znf821 coding upstream 332585 26779634 ~ 26797591 (+)
LOC120556070 NA coding downstream 120773 27252681 ~ 27260955 (+)
znf280d znf280d coding downstream 129647 27261555 ~ 27279401 (+)
mns1 mns1,LOC102786898 coding downstream 149504 27281412 ~ 27287556 (+)
prtga prtg,LOC102785529 coding downstream 224360 27356268 ~ 27389367 (+)
ccpg1 NA coding downstream 259214 27391122 ~ 27403314 (+)
G30148 aqp9 non-coding upstream 100622 27016958 ~ 27029554 (+)
G30124 NA non-coding upstream 237611 26891684 ~ 26892565 (+)
G30023 NA non-coding upstream 901184 26228729 ~ 26228992 (+)
G30022 NA non-coding upstream 901513 26228430 ~ 26228663 (+)
G30020 NA non-coding upstream 904374 26225565 ~ 26225802 (+)
G30280 NA non-coding downstream 166921 27298829 ~ 27299567 (+)
G30287 ctcf,LOC103374180,LOC104965832,LOC102192328 non-coding downstream 319430 27451338 ~ 27455971 (+)
G30364 NA non-coding downstream 354896 27486804 ~ 27487597 (+)
G30423 NA non-coding downstream 504951 27636859 ~ 27637082 (+)
G30428 NA non-coding downstream 531292 27663200 ~ 27663466 (+)
nfat5b nfat5 other upstream 1202450 25883454 ~ 25927726 (+)
pkd1l2a vat1l,pkd1l2,LOC102776808 other upstream 1246816 25855839 ~ 25883360 (+)
sox6 sox6,LOC103363464 other upstream 2674488 24320064 ~ 24455688 (+)
plekha7b NA other upstream 2815531 24235723 ~ 24314645 (+)
G29433 NA other upstream 3397705 23727012 ~ 23732471 (+)
LOC120556198 LOC103371916,LOC104965843 other downstream 163849 27295757 ~ 27316181 (+)
nedd4a nedd4,LOC103371920,LOC102785817 other downstream 186462 27318370 ~ 27351837 (+)
LOC120555577 NA other downstream 277132 27409040 ~ 27410250 (+)
vrk3 NA other downstream 294380 27426288 ~ 27440414 (+)
LOC120555924 LOC103398348,LOC104965831,LOC103374185 other downstream 324508 27456416 ~ 27464759 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000256_00072914_00083834 NA coding CI01000256 null 71915 ~ 83974 (+)