LOC120555577


Basic Information

Item Value
gene id LOC120555577
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 27409040 ~ 27410250 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU40192
AAGAAGAATGCTTGCCTGCTGCTCATAGACTCCTTGGTGTCCTTGTTGTATCTTGGGATTTTAcctctgtgtctttctgtctgtctgttttggtGATTACAGACACTTCGAATAAACCGCTTCCTCGATCATCTTGTGTTTCAACATTTGGATTTCATATCAAAAGACGTCATGTTTCGAAGAAGAGTACCCTTCTCACAGATCGCCTTAGCCACACTGCTTGGAGTCGCTGGTGGTATTTATATCTACAGACCTTATTTTGAGCCGGTGCAGACCTCAAGACAACAAAACCAGGATGTGCCAAAGAAACCGAATGAAACAGACTGAAATAATTCATCACTCCCAGGAAATACTTCACACACAGAAGCCAGAAGAACTACATCAGAGGCTGCTGGACTGTCAGAGCTGGAGGCCGAACTAAAGACAAGACCAGCATGGATAAATCCATGCTTCTTTGGG
>TU40193
CCTGCTGCTCATAGACTCCTTGGTGTCCTTGTTGTATCTTGGGATTTTAcctctgtgtctttctgtctgtctgttttggtGATTACAGACACTTCGAATAAACCGCTTCCTCGATCATCTTGTGTTTCAACATTTGGATTTCATATCAAAAGACGTCATGTTTCGAAGAAGAGTACCCTTCTCACAGATCGCCTTAGCCACACTGCTTGGAGTCGCTGGTGGTATTTATATCTACAGACCTTATTTTGAGCCGGTGCAGACCTCAAGACAACAAAACCAGGATGTGCCAAAGAAACCGAATGAAACAGACTGAAATAATTCATCACTCCCAGGAAATACTTCACACACAGAAGCCAGAAGAACTACATCAGAGGCTGCTGGACTGTCAGAGCTGGAGGCCGAACTAAAGACAAGACCAGCATGGATAAATCCATGCTTCTTTGGG
>TU40196
CTCAAGTCTAGTTTACCTCTAGTGTCGCTCAGGCTTCTCTcagcttttctttctcttccttcaCTCTACCCACGATAAGAAGACTCTACCTCACTTTGTCAAACTCCGCTAGGTGGCGGTGGCGGACTGCATGTTTTGCTGTTCTGCCATAATTCAGAGTAGAAGAAGAATGCTTGCCTGCTGCTCATAGACTCCTTGGTGTCCTTGTTGTATCTTGGGATTTTAcctctgtgtctttctgtctgtctgttttggtGATTACAGACACTTCGAATAAACCGCTTCCTCGATCATCTTGTGTTTCAACATTTGGATTTCATATCAAAAGACGTCATGTTTCGAAGAAGAGTACCCTTCTCACAGATCGCCTTAGCCACACTGCTTGGAGTCGCTGGTGGTATTTATATCTACAGACCTTATTTTGAGCCGGTGCAGACCTCAAGACAACAAAACCAGGATGTGCCAAAGAAACCGAATGAAACAGACTGAAATAATTCATCACTCCCAGGAAATACTTCACACACAGAAGCCAGAAGAACTACATCAGAGGCTGCTGGACTGTCAGAGCTGGAGGCCGAACTAAAGACAAGACCAGCATGGATAAATCCATGCTTCTTTGGG
>XM_039794364.1
GGTGGCGGACTGCATGTTTTGCTGTTCTGCCATAATTCAGAGTAGAAGAAGAATGCTTGCCTGCTGCTCATAGACTCCTTGGTGTCCTTGTTGTATCTTGGGATTTTAcctctgtgtctttctgtctgtctgttttggtGATTACAGACACTTCGAATAAACCGCTTCCTCGATCATCTTGTGTTTCAACATTTGGATTTCATATCAAAAGACGTCATGTTTCGAAGAAGAGTACCCTTCTCACAGATCGCCTTAGCCACACTGCTTGGAGTCGCTGGTGGTATTTATATCTACAGACCTTATTTTGAGCCGGTGCAGACCTCAAGACAACAAAACCAGGATGTGCCAAAGAAACCGAATGAAACAGACTGAAATAATTCATCACTCCCAGGAAATACTTCACACACAGAAGCCAGAAGAACTACATCAGAGGCTGCTGGACTGTCAGAGCTGGAGGCCGAACTAAAGACAAGACCAGCATGGATAAATCCATGCTTCTTTGGGGTTCTTTGTATGATTGTTAATGtacaaaataaagtatttaataaTTTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU40192 False 459 lncRNA 0.44 2 27409202 27410201
TU40193 False 445 lncRNA 0.44 2 27409216 27410201
TU40196 True 621 lncRNA 0.45 2 27409040 27410201
XM_039794364.1 False 553 mRNA 0.42 2 27409157 27410250

Neighbor

gene id symbol gene type direction distance location
ccpg1 NA coding upstream 5726 27391122 ~ 27403314 (+)
prtga prtg,LOC102785529 coding upstream 19673 27356268 ~ 27389367 (+)
mns1 mns1,LOC102786898 coding upstream 121484 27281412 ~ 27287556 (+)
znf280d znf280d coding upstream 129639 27261555 ~ 27279401 (+)
LOC120556070 NA coding upstream 148085 27252681 ~ 27260955 (+)
rab27a rab27a coding downstream 578 27410828 ~ 27425702 (+)
nudt21 nudt21 coding downstream 57615 27467865 ~ 27472009 (+)
tradd tradd coding downstream 79763 27490013 ~ 27499955 (+)
gnao1b gnao1,LOC103374184,LOC101483250 coding downstream 90916 27501166 ~ 27509230 (+)
thap11 thap11 coding downstream 138204 27548454 ~ 27552229 (+)
G30280 NA non-coding upstream 109473 27298829 ~ 27299567 (+)
G30235 cgnl1 non-coding upstream 277132 27130176 ~ 27131908 (+)
G30148 aqp9 non-coding upstream 379486 27016958 ~ 27029554 (+)
G30124 NA non-coding upstream 516475 26891684 ~ 26892565 (+)
G30023 NA non-coding upstream 1180048 26228729 ~ 26228992 (+)
G30287 ctcf,LOC103374180,LOC104965832,LOC102192328 non-coding downstream 41088 27451338 ~ 27455971 (+)
G30364 NA non-coding downstream 76554 27486804 ~ 27487597 (+)
G30423 NA non-coding downstream 226609 27636859 ~ 27637082 (+)
G30428 NA non-coding downstream 252950 27663200 ~ 27663466 (+)
G30461 NA non-coding downstream 400878 27811128 ~ 27811547 (+)
nedd4a nedd4,LOC103371920,LOC102785817 other upstream 57203 27318370 ~ 27351837 (+)
LOC120556198 LOC103371916,LOC104965843 other upstream 92859 27295757 ~ 27316181 (+)
nfat5b nfat5 other upstream 1481314 25883454 ~ 25927726 (+)
pkd1l2a vat1l,pkd1l2,LOC102776808 other upstream 1525680 25855839 ~ 25883360 (+)
sox6 sox6,LOC103363464 other upstream 2953352 24320064 ~ 24455688 (+)
vrk3 NA other downstream 16038 27426288 ~ 27440414 (+)
LOC120555924 LOC103398348,LOC104965831,LOC103374185 other downstream 46166 27456416 ~ 27464759 (+)
G30295 NA other downstream 55528 27465778 ~ 27467021 (+)
ogfod1 ogfod1,LOC102779874 other downstream 63415 27473665 ~ 27486769 (+)
G30366 NA other downstream 77427 27487677 ~ 27488791 (+)

Expression


Co-expression Network