LOC120556198 (LOC103371916,LOC104965843)


Basic Information

Item Value
gene id LOC120556198
gene name LOC103371916,LOC104965843
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 27295757 ~ 27316181 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU40211
AGTTGGCATGGAGCATATAACAGGATGTGGatgaatttaaaataataaacgcAGTAGTGTTACTTCCGTTGTGATGGTTCACTCTGATGGAATACATGAAGAGTATCTGTTAATACTTAAATACTGAATCGTAAAAGAAAGTGATAAATGTCTAAACTGTCCATTTATGTGGTTTTCAGATCCACATTTTCAAGCTTTTGAGATGTTCTTCTTTTATAGAAGGCCTTCCTGACAATCATCACAGACTTTGTGCCTCTCAGAATGAGCCAATCGATTTAAAGAGTCAAGTCAACCTTTCATCTCTTAATCATCCCCAGAATCAAACAACTGTTTCAATATAACTCAGACAGCTTGAAGATGATGATATCAATAATATAAGTAGGCCTCTTTTgcacttagttttttttttcaagccacATTTTgcaaaagtttgaaaaaaagtcttGTGTAGTCATAACTTAAAGTTGTAGAAGCACTAATGAAGCCCTTTAATTTACATgcacaatatgtctttattaattGGTAATCCATAGATATATTAGAAAAACAAGCAGTGAAAGATGAGGGCTTAACTCTTAACCACTGTTAGATAAAAAGGGAAATCATTTATAAAAGAAACCATTTACCTAAGAATCAAACTAAACCCCGTGAATGTGGGTTTCTGCACTTTTAAAGTATGATTCTAATATAGAATTATGGAACATTATGATAGCCATTTTCCTTAGCACTCAGAAAATGCATTATTTGTATTGTGTGGAAATTATATTGAGTGAACATAATATGGACTAGTTAGATGAAATTGAGCAGAAATGAACACTATTTCAAAAGAACTTGAACAAGTTTGTTTTCACACGGCACTGACAATCTGTAGAACTGGTGTTTCTTTACGTAAATGCACTGCGTTTGGTTTGGATGATGAAGGAACAGGTTTCACTGCATGGCCCAAGGATTTCAATCAACAGGTCTAACAGCTAATCACTGATCAAATGTGAAAGTTTGGTTTTACACTGATGATTACCTGTGTGTAAAGAAGTCAAACTGAAACTCACAGGTGCTCCCTGAGGTTTTTGGTTTGTGAGCCTTATGTCCATACCAAAGACTAACTTTTAACTATAACCTGCACTAAGATTTCAGGTGACATACTTAGTTATGTTTAATAACAGCCATAacaaatatattctgttaaaCAGTTCTTTATCAGGACAATGTTAAGgatttctttgttttcattgttgatgCTTTTGTAAACCCAACaggtaaaaaaacaattttatggaggcaaaaaaaaaactgtaatgatcCTATTTCTCTGCCATcgttctgttttttgtttttactatttatttaaaGTGTGTTGTTTGTACAGAAGATGTAACCTTGCAAACCATTCAATCTTGTGAATTCAGAATAATCTGACCTGCACTGTTATGATATTTCGTAGCATATGTTTCATAGCATATTACCACGTGTCATATACATTACTAGATGAATAATGAGAACATGTAACACAACTCAGATTTAAAACTCTTTCAGACCTGGATTTTGGCAGAAAACTATCCCAGAAAATATTTGCACACACTTTAAAATGTGGAAATGAAACTATCCATAATGATATGGTTTAATATTAATGTCATGATATATTGCAAACACAGCACATTGAATCTCTTTCACTGATTTGATTTGA
>XM_039795638.1
AACAGCTACTACTCACGATGCACATGCAGAGAAATCCCATAACGTGAGGGGCACATACGGAGGGGCACACGCAGCCAGCACAACGGAGGACTAGCTAGTTGTTTTGCAACTGTCCGTGTACTGTTTACACGCGCCTTTATTTATATCCATGCATCAAGTCGTGTTTGACAGCGACACGTAGTTTTGTTGCACACCGTCTTTAATTCACCAAGTGTTGGGACTTGAAGCGAGCGATGTCGGAGGAGGACTGGgtggcaacaaaaacaacagggCGCGCTGCTGTCCCGTTAGCATCGCAACGATCTCCGGTCCACGTTGTTTAACCCGAGTACACCCGTCCACGCCTCCTGTTCAATCCAGTCGAGACTCGTCTCGAGGCCCACGGTGATGGCCGAGGAGGacccccagcagcagcagccggacCGCGGGGCTAGGAGCCTGCCCGGCCTGCTCACCGGGCTGCAGAGCGCTGAGGCCAGCGCTCTGCAGCTCAGGATCAAGAACTCCATCTGCAAATCTGTTCAATCAAAAGTGGAAAACATTCTGcaaGATGTGGAGAAGTTCTCAGACATTGAAAAACTCTACCTCTACCTAAAGTTGCCTGCTGGTCCGAGCAGTAGCATTGATAAAAGTGACCAGAGCGCCCTGTCATCAAGCCGCACACAGCAGATGCATGCATTCAACTGGATCCGCCATCATTTAGAGGAATACCCAGAGACGTCTCTTCCCAAACAGGAGGTCTATGATGAATACAAGAGCTTCTGTGACAATCTGAACTACCACCCACTGAGTGCTGCGGACTTTggaaaaatgatgaaaaatgtcTTCCCGAACATGAAGGCTCGTCGACTTGGCATGAGAGGAAAATCAAAATATTGCTATAGTGGACTAAGGAAGAGGCTCTTTGTTCACATGCCATCTTTACCCACTCTGGATCTCCATAAAACAGGGGATGAGctccagtgtgatGTCCTCGAGTCACCGGGCCAGCTTAGCAGCATAAAGGAGGATGTGCGATTTGCCGCCTGTGATCTGGTGTGTGAGTGGGCCAAAAAGGTGCTGAAACGCCAGTTTGATGCCGTGGAAGAATTGGCTCGCTTCCTAATCGACAGCCATTACATCAGCAACAAGTCTCTGGCAGCTCTCACCATTATGACCGGCACAGCAACAGAGGTTAAGCCTCCACAGATGGTCTCAGCGTTTGTCCCAACTGCTGAGGCTCACTCCTTCCAGCCTCATGTGACGACACTGTCCTCACCTTCTGTGGATGCAAAGCAGCAGCTCCAGAGGAAGATCCAGAGGAAACAACAAGAACAGAAGCTGCACTCTCCTTTACCTGGAGAGGGACAAACCAACAGGGCAGATGACAGTGTGCCTTGTGCTAGCCCCACCCCTCCGTCACCTCAGCCAACCATAGGCATCATGGTCGCTGCTGTCCAGAGCCCCATCACGGTACAGAGAAGCAGGCAGCTGATGTCCCCCAGTCCAATGGGAACAGTAGAGAGCAAAATGCTGCCTATTAACTTCCAAATGGTGACCCAGCCACTACAGGCAGTGAAACAGAGCCCCAAAACCCCGCAAAATATTCTAGCCAGTCCAGTGGGAGAACGCACTGCTCGGCAGCGCTATGCGCAAATCCTGCCCAAACCTGCGGTCACGACTGCTATCGCCTTGCGCTCGCCCTCCACCATGATCATTGGCAACAGCCCTGTTAAGACCGTGATGACTACATGCCATGTCAGCCCAGTCAGTTTGGTCAAGATGACAGCCATATCTCTTGCACCCAACAGCAGCAATACCACCACTTCTTTCACAAAAGCCCCTCTTCGGCCGGCTTCTGCAGGCATTAGTAGTTCTGCAGTTGCAGAAAACTTCAGTTCCAATCAAAGCATTAGGAGTACCTCTGCAGTCCCCATTCTGACCCCGGTGGCAAGGCCTGGGCAGACTACTAACAATCATACCATCGATGTTGAAATGGAAGTTGAAGCTATACATAAAAACAGCCAAATGCAAAATCCTGGCACTCAAGAACCAATGGCAAATAGGACTGGAGGGGCTTTACAGAGGGCTGCCAGTGTGCCCATACCTCAGTCTAAAGGCTTCCTGGGTCTAGAGGAGACATCCAGGACTAATTGCAACGGAAAGTCCTCTTCAACCCCTAACACTGTGGCAGCTGTCCAAAACCGCAATAACGGCGCTAATAATACAAGCACTATGCACTTAACTCCCTGCACTCAGAATACCAGCGCTGTTTCTTTACTGAACACCAGCAGACCACCTTCTTTTGTGGAAAGCAGCAGTGTAACCGCAGCAAAGGAAGGTTTCTTGTCCACTAAGAGCCTCAGGAAACGTTCAGGCCTCAGTCCAGACCTTTCTCCAATCAAAAGGGTTTTTATGCCCCAGCAGCCAGAGCTAGAGGGCGCTGCTGGTCTTGGAAATGGGATTAGAAACATGGTTGGGAACATCCTCAGGCCAGGAGCTCCAACTAGACCTGAAAGTGCACCAGCTACCAGGGAGGTAGAGATGAAAATGAAATATCTTCCAGTCCACGCACACAGGACTTCTTCTTTCAGAGCCAGTGATTTCTTCTCTGTTGCCAAAACACAGAGCTCAATGCAGAGGAAAGACCCTTCCACTGTTATGGAAACTAGCTCCTCACTTACTCAAGCATTAATACAACAACGGCAGGGACACACAATGGCTAACGTGCATGCCATACCTAATAACCCCGGCCTCCAAACACATTCAGGTGTGAGTGATGTTAGGAGTTCAGCCACAGGGAGCCTGGACCCTCAACAACATACCTACACTCAGTCCAACCCTGTTACTGAACACTTTATGAATCAAGCTTCATCATTGAGCCAGCTCCCTATGCAAACTGATATGGATTACTTTCCCTTTGATGATGATGTGACTCAGGACAGCATTGTGGAGGAGCTGGTGCAGATGGAGGAGCAGATGAAATTTAACAACATGCAAGAGTTTGGAGACTGTGTCACACTGCAAAGCCAACAGGCTACGATGCCGGACAACATAATGTCCACCAATCAGACCATGACTGCTTTCTATCATGCTGCAAACAGCCACAGCAACCCGATGCATACTCCTACACTGACACCCACACCCACGTCGGAAATGATGGGAGGAGCCCAAGGCCTCGCCGGAGAGAGCCCCTTCTCCCACATCGCCTCCACCACCCCAGTGGACAGCTCACTGGGAAGCAGTCGTCACACCCCAGTTGGTACTCCGCACTCCAACTGCAGCAGCACTGTGCCTCCCAGTCCAGTGGAGTGTAGAAACCAGTTTGCATTTACACCCATCAACTCCAGCATCACTGGTTTCCATGACGGCAGCACCGTTTCCAGCAGCCCGGTTAAGCCCATGCAGAGACCGATGGCCACCCACCCAGACAAGACCAGGCTGGAGTGGATGAATAACAGTTACAACAGCAGCAGCGGGAGCCTAAACAAGTCAAACAGTGGAATTGGAATCCTCCCAAGCTATCAAGGCCTGATAGGTGATCATTTTCAAAAGCCTCACGCCTTTGCCGTCCCTCATACACGGCACCATGACagccattttggccgcttgacTCCCATCTCGCCCGTGCAGCAGCAGGTAGCCAGCATGACTAACATGGCCAAGCAGGAGGGCTTTGCTGTGCCTGCCCCTCTGGATAACAAAGCCACCAACACACCTGCTACAACCTTTCGATGTCGCAGTGTAAGCCCCGCCGTGCATCAGAGGAACTTGAGTGGAAACGCAGGGAACCTTCCCCCTATCCCTCGTTCAGTAGTGTCTCCCTTTAACTCTCCTGTCATGCCTGAGATGTTAAACATCTTTGTGAACAGCCAGACAAATCTTGGGGTGAGCAGCATGGCTCAGAGGAGCCATTCTGTGCCGCTCAACATCATGATGCAAACTGAGGTCCGGCCCACGTCGGGCCAGCAATGCAACAGCAAAAACATCACCAATGTCCTTTTGAGCAAGCTGGATGGGGACCATGACGACACTATTCGGGGTCTGGGCATTAATAATTTACCCTCCAGCTATACTGCACGCATGAACCTCACCCAGATCCTCGAGTCTGACCCAAACCTCTCCTGCAGCGACAACCACCTCAGCCTGATGACCTCGGACTCCACCAGCACATCCAAGTTGCAGAGGCCAAATTACCTCATCGAAAATACTATCAATGAACAAATGATTCTCGCAGCAGGTGACAGCCGAGTACAGTCGGCTTCTAGAGAGCAGCATCAACAACAGGCACAGGCTATGTTGCTAGCTTTGAGCTCAGAGCAGCATCAAGAAGAACTACAGCAGCAGTTGGATTTCAGCACCACTGTGaaagacctcctgacagacaacAGCCTTACTGCTGGCAGTCAGCTCATGGACCAGGTGTCAGAGCTCACTACAGGTGCAGCAGATTTCCCCTGTGAAATCCGAATGGCATCGGAGCTCTCCAGTAGCATCAATGACCTTAACGCATTGGACACAGACCTTCTGTTTGACCCCAACCAGCAGCAAGGGCAATATCAAAATGCTGCTGCGGATGAGTTGGTGAATGATGCGCTGTTTCAGCAAATGACCAGCGAGACGGCGCATTCAAGTGGACTTGACTGGCTCGAAAGCAAAGATCATCCACCTGTTGGGTTGATGGGGTGAGGATACAGTTTTTGTATAGTCATGTTGAACATGTTCACATGTGGTTGccgtttgttttatttattttcaggcATTTACACTTTATAATGCAACACTGGACACATTGAGGTTTGTCCAGTTTAAGTGCCAGGCTGAAATGCAATGATGCTGCAACCCTCTGATTAAAATGCTGGTCATTTCCCTTTAATCAGAGGAAATCGCCTCATGTTGTTTGATCAAAAGCATTTCCAACAAGTAAACAAAGGTTACTGAACTTTTTTTATGATCAATATTTTACTGAAAAGTCAGTGAATAAATCATAACAGAGCCATGGATTTCTTAGTGTAAAGAAATGAAACATTAGTAATACGCCTTTTACAAAATTATTTCTTTAATCATTGTGTCTAAATCTTTTAACTACAGGCATTATCTAACTAAAGCATAAGGGAAGAAATGACTAAATATATTTACTGCTGAACTAATAATATGTCATAATTGAAACACTTGTGTGCGATGTAGATtcactgagaaaaaaaatggaattaTTACAAGTTATCTTTAGGAGCTTTATGTGTCACTGGTTTTAAGTGCATTTTCCTTAGCTGAAAAAGATATTTACAACAAGACATGTTTAAAAGTGTACACTCAGTGTATAGAAATATAATGTTGTGATAGAAACATCTAACCAATTTCATCCATATAAAATCTATGTAATATATTCTTACGATTTGCTAGAGTTGGCATGGAGCATATAACAGGATGTGGatgaatttaaaataataaacgcAGTAGTGTTACTTCCGTTGTGATGGTTCACTCTGATGGAATACATGAAGAGTATCTGTTAATACTTAAATACTGAATCGTAAAAGAAAGTGATAAATGTCTAAACTGTCCATTTATGTGGTTTTCAGATCCACATTTTCAAGCTTTTGAGATGTTCTTCTTTTATAGAAGGCCTTCCTGACAATCATCACAGACTTTGTGCCTCTCAGAATGAGCCAATCGATTTAAAGAGTCAAGTCAACCTTTCATCTCTTAATCATCCCCAGAATCAAACAACTGTTTCAATATAACTCAGACAGCTTGAAGATGATGATATCAATAATATAAGTAGGCCTCTTTTgcacttagttttttttttcaagccacATTTTgcaaaagtttgaaaaaaagtcttGTGTAGTCATAACTTAAAGTTGTAGAAGCACTAATGAAGCCCTTTAATTTACATgcacaatatgtctttattaattGGTAATCCATAGATATATTAGAAAAACAAGCAGTGAAAGATGAGGGCTTAACTCTTAACCACTGTTAGATAAAAAGGGAAATCATTTATAAAAGAAACCATTTACCTAAGAATCAAACTAAACCCCGTGAATGTGGGTTTCTGCACTTTTAAAGTATGATTCTAATATAGAATTATGGAACATTATGATAGCCATTTTCCTTAGCACTCAGAAAATGCATTATTTGTATTGTGTGGAAATTATATTGAGTGAACATAATATGGACTAGTTAGATGAAATTGAGCAGAAATGAACACTATTTCAAAAGAACTTGAACAAGTTTGTTTTCACACGGCACTGACAATCTGTAGAACTGGTGTTTCTTTACGTAAATGCACTGCGTTTGGTTTGGATGATGAAGGAACAGGTTTCACTGCATGGCCCAAGGATTTCAATCAACAGGTCTAACAGCTAATCACTGATCAAATGTGAAAGTTTGGTTTTACACTGATGATTACCTGTGTGTAAAGAAGTCAAACTGAAACTCACAGGTGCTCCCTGAGGTTTTTGGTTTGTGAGCCTTATGTCCATACCAAAGACTAACTTTTAACTATAACCTGCACTAAGATTTCAGGTGACATACTTAGTTATGTTTAATAACAGCCATAacaaatatattctgttaaaCAGTTCTTTATCAGGACAATGTTAAGgatttctttgttttcattgttgatgCTTTTGTAAACCCAACaggtaaaaaaacaattttatggaggcaaaaaaaaaactgtaatgatcCTATTTCTCTGCCATcgttctgttttttgtttttactatttatttaaaGTGTGTTGTTTGTACAGAAGATGTAACCTTGCAAACCATTCAATCTTGTGAATTCAGAATAATCTGACCTGCACTGTTATGATATTTCGTAGCATATGTTTCATAGCATATTACCACGTGTCATATACATTACTAGATGAATAATGAGAACATGTAACACAACTCAGATTTAAAACTCTTTCAGACCTGGATTTTGGCAGAAAACTATCCCAGAAAATATTTGCACACACTTTAAAATGTGGAAATGAAACTATCCATAATGATATGGTTTAATATTAATGTCATGATATATTGCAAACACAGCACATTGAATCTCTTTCACTGATTTGATTTGACAGctgttttatacattttagaaaactttAATTTCTGGAAAAGCAGATTATATCATTGTAATATATAATCTCTCTTTTGAGTATAATTTAATATTGAACAATTTAGacaaatgtttatttatgttgtattttctctttactgtgtctgtgaaaaaaaacaaagcatttatTTGGTTCGCACTGATGTTTGTGTTTAAAGAAGACTTTACCCTTCCTCTTGTTAAAAGTGGTTCAGAGCTGTAGAACTGCCCTCTACTGTTACGTTGCTGGGGTCAGTGTACAGGggattcttattttttttttttgcattttagcaAGTGCTTTTATAAGGGGAAGTGCTTGTtgatactggtttttcaagaCTTTTTAAAACTAATAAACGTTTTTAAGTACATTGGTA

Function

NR:

description
PREDICTED: DNA-binding protein RFX7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU40211 False 1684 lncRNA 0.33 1 27314098 27315781
XM_039795638.1 True 7466 mRNA 0.44 9 27295757 27316181

Neighbor

gene id symbol gene type direction distance location
mns1 mns1,LOC102786898 coding upstream 8201 27281412 ~ 27287556 (+)
znf280d znf280d coding upstream 16356 27261555 ~ 27279401 (+)
LOC120556070 NA coding upstream 34802 27252681 ~ 27260955 (+)
aldh1a2 aldh1a2 coding upstream 229869 27039505 ~ 27065888 (+)
adam10a adam10 coding upstream 294321 26969366 ~ 27001436 (+)
prtga prtg,LOC102785529 coding downstream 40087 27356268 ~ 27389367 (+)
ccpg1 NA coding downstream 74941 27391122 ~ 27403314 (+)
rab27a rab27a coding downstream 94647 27410828 ~ 27425702 (+)
nudt21 nudt21 coding downstream 151684 27467865 ~ 27472009 (+)
tradd tradd coding downstream 173832 27490013 ~ 27499955 (+)
G30235 cgnl1 non-coding upstream 163849 27130176 ~ 27131908 (+)
G30148 aqp9 non-coding upstream 266203 27016958 ~ 27029554 (+)
G30124 NA non-coding upstream 403192 26891684 ~ 26892565 (+)
G30023 NA non-coding upstream 1066765 26228729 ~ 26228992 (+)
G30022 NA non-coding upstream 1067094 26228430 ~ 26228663 (+)
G30287 ctcf,LOC103374180,LOC104965832,LOC102192328 non-coding downstream 135157 27451338 ~ 27455971 (+)
G30364 NA non-coding downstream 170623 27486804 ~ 27487597 (+)
G30423 NA non-coding downstream 320678 27636859 ~ 27637082 (+)
G30428 NA non-coding downstream 347019 27663200 ~ 27663466 (+)
G30461 NA non-coding downstream 494947 27811128 ~ 27811547 (+)
nfat5b nfat5 other upstream 1368031 25883454 ~ 25927726 (+)
pkd1l2a vat1l,pkd1l2,LOC102776808 other upstream 1412397 25855839 ~ 25883360 (+)
sox6 sox6,LOC103363464 other upstream 2840069 24320064 ~ 24455688 (+)
plekha7b NA other upstream 2981112 24235723 ~ 24314645 (+)
G29433 NA other upstream 3563286 23727012 ~ 23732471 (+)
nedd4a nedd4,LOC103371920,LOC102785817 other downstream 2189 27318370 ~ 27351837 (+)
LOC120555577 NA other downstream 92859 27409040 ~ 27410250 (+)
vrk3 NA other downstream 110107 27426288 ~ 27440414 (+)
LOC120555924 LOC103398348,LOC104965831,LOC103374185 other downstream 140235 27456416 ~ 27464759 (+)
G30295 NA other downstream 149597 27465778 ~ 27467021 (+)

Expression


Co-expression Network