G30287 (ctcf,LOC103374180,LOC104965832,LOC102192328)


Basic Information

Item Value
gene id G30287
gene name ctcf,LOC103374180,LOC104965832,LOC102192328
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 27451338 ~ 27455971 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU40229
GTTTTTTAGACATACAAATGAGTGAAGATCTTAATATAAAGTTGTCcatttaataaaatagatttgCAAGCAAAATACAGACATTTGTGTTAGCACTCAGTTGTTTCTCAGCGAATGTTGATAAACAATGTTTCTAGCCATAATTACTTGGGGCTTTACACGTTTAGAACCAGACTGATTTTATAGACCCATGATTGAGATTACAGCTACAAAAAAACTATTGAAAACATCAGTCTTAACCTCTACTTTTATTGGTTGTACAGTCATATCTGTTCTCGTCTGCCACACAAGTTATTAAAATGCCATTCAAGCTGCTACGTTGCATTGCCAAATGGtacaaaattaaaacatcaACCCAAAATGGAATGGCTACAAAAGGGAGCAAAACATTTTGTTGCACTTTGTGACACTGTTTAGCACATATAAGTCATCTAGGGGTGTTACAGTAGCAAGAAAAGCATCAAGATAAGCAGTCTTAAGCTTTTAAAAACTAGAATGGGCTTAAAGGGAATTACTTACCCCAGAAAAAGAAGCCAAAAATTAATATTGTGGCTGTGATTAACGGCAATATCATCTTTCTGAAAGTTACCTGTTTTTTTGCAATCGTATGACATTTTTGATGATGTGTCCATCTTGAACCTAAATGTACATTTCTTTGCAATCTTCTGCTGCTCTAAAAAGTCGAAGCGAAAAAGCCAATTTTCATCTCCAAATGTGACGGAGAACAGTTTTCTCTTCTAAACCGAGAGGTACATGATGCTCTTCAGTGAGGAGATTAATATTGACTGGAATTATGACAAAGTAAAGTCCACATTATGGGTGCATTGCTATCTACTTACAACTTTTACTCAATGTCACACAGGCGTATaaacaagtaaaacaaaaaaaggacttagaaagaaaagataaaaagtTTATGCATTTTTTTGGGTAGGTAAATccttattaaaaatgtttttaactcATCTAACTTTTTATCAATacatgattaaaaaacaaatcttaaattacaacagtgatgttttttttctgtgctggATGCAAGTGTTTGTAATCCTAAATGccaagaaattaaaatgaagaTGTTATGaggggtctgtgtgtgtttacaggttTGACCCTCACATCCATCACCGGTCCATCATGCTGAGGATCATCTCAGGAGTGAGGTCTCCGTTCGGTGGGGCCTCAGACTGCTGCACTTCCGGTGCTGTCCCCTCTTCCTGGGGCATCTCCTCCAGCTGGATGGTTGGATTCCCTCCACCGACCACCACCTCCTCTGCAGCCTCATCGTTGCCGTCCTCCAGGTCATCGGCTCCAACTTCTTTCTTCACAATTATGTCATCCACCTCTCCGGTGGCCTCGTCCTCCACACGGATGATAGCAGCCGCTGTTAAGAGTTTCAGGTTGGAGCGCCTTGGACAGGTGTAGCTACACAACTCACACTGGAAAGTCTTCTTTACACCTGGACACACCATTTTAGTATTATAAAGAGAACCTCACATAGCCAAACCACAATCTAAAATGAGTCTTTTTCAGCATCATGTTGAGATATctaaagtaaaataataaaagaaaaataataaaagaccTTTTTTCTTGATTTTGGTGGGCTTTGGTGGCTTCATGTTGCCCACAACCTTCTCAGCATTCACTTCTGACAGCAACCCCTCCTGCTGCTCTTCTTCAAAGTCATACACCGAAACATCCATGTCACGATCGCCCTCTCCGTAGCGCAGACGgctcttctttcctttcttccccCTACTACGGATACTAGTGATGGGCTGGTAGTCTGGGTCCTTGGACCATTCTGGCTGTTCTTGCTGAGGCACAGTGTCTTCTACTTCTGctgcctcttcctcctcctccacctctcccCTCACCACTTGAAGCTCCTCGTGGGCTGCCTGAAGCTCCTCCTGCTCTACGGTCTCTACCTCACCATTGGCACCCACTTTTACC

Function

symbol description
ctcf Enables chromatin binding activity. Acts upstream of or within regulation of transcription by RNA polymerase II and skeletal muscle tissue development. Is expressed in brain; digestive system; immature eye; notochord; and somite. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability 21. Orthologous to human CTCF (CCCTC-binding factor).

NR:

description
PREDICTED: transcriptional repressor CTCF-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU40229 True 1965 lncRNA 0.41 2 27451338 27455971

Neighbor

gene id symbol gene type direction distance location
rab27a rab27a coding upstream 25636 27410828 ~ 27425702 (+)
ccpg1 NA coding upstream 48024 27391122 ~ 27403314 (+)
prtga prtg,LOC102785529 coding upstream 61971 27356268 ~ 27389367 (+)
mns1 mns1,LOC102786898 coding upstream 163782 27281412 ~ 27287556 (+)
znf280d znf280d coding upstream 171937 27261555 ~ 27279401 (+)
nudt21 nudt21 coding downstream 11894 27467865 ~ 27472009 (+)
tradd tradd coding downstream 34042 27490013 ~ 27499955 (+)
gnao1b gnao1,LOC103374184,LOC101483250 coding downstream 45195 27501166 ~ 27509230 (+)
thap11 thap11 coding downstream 92483 27548454 ~ 27552229 (+)
nrn1lb nrn1l,LOC101167108,LOC107381583,LOC103366277 coding downstream 99222 27555193 ~ 27560381 (+)
G30280 NA non-coding upstream 151771 27298829 ~ 27299567 (+)
G30235 cgnl1 non-coding upstream 319430 27130176 ~ 27131908 (+)
G30148 aqp9 non-coding upstream 421784 27016958 ~ 27029554 (+)
G30124 NA non-coding upstream 558773 26891684 ~ 26892565 (+)
G30023 NA non-coding upstream 1222346 26228729 ~ 26228992 (+)
G30364 NA non-coding downstream 30833 27486804 ~ 27487597 (+)
G30423 NA non-coding downstream 180888 27636859 ~ 27637082 (+)
G30428 NA non-coding downstream 207229 27663200 ~ 27663466 (+)
G30461 NA non-coding downstream 355157 27811128 ~ 27811547 (+)
G30518 NA non-coding downstream 441706 27897677 ~ 27898381 (+)
vrk3 NA other upstream 10924 27426288 ~ 27440414 (+)
LOC120555577 NA other upstream 41088 27409040 ~ 27410250 (+)
nedd4a nedd4,LOC103371920,LOC102785817 other upstream 99501 27318370 ~ 27351837 (+)
LOC120556198 LOC103371916,LOC104965843 other upstream 135157 27295757 ~ 27316181 (+)
nfat5b nfat5 other upstream 1523612 25883454 ~ 25927726 (+)
LOC120555924 LOC103398348,LOC104965831,LOC103374185 other downstream 445 27456416 ~ 27464759 (+)
G30295 NA other downstream 9807 27465778 ~ 27467021 (+)
ogfod1 ogfod1,LOC102779874 other downstream 17694 27473665 ~ 27486769 (+)
G30366 NA other downstream 31706 27487677 ~ 27488791 (+)
LOC120555373 LOC102214634,LOC101478275,LOC102310185,LOC103366289 other downstream 344497 27800468 ~ 27807464 (+)

Expression


Co-expression Network