LOC120555924 (LOC103398348,LOC104965831,LOC103374185)


Basic Information

Item Value
gene id LOC120555924
gene name LOC103398348,LOC104965831,LOC103374185
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 27456416 ~ 27464759 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU40234
CTGTAGCGTGATGATCTGACCCTCGTCTCCACCAGTAACAGTCACTGTGCCGCTGCCCTCCAACACCTCGGTCTTCATTTGCAGCAGAGTCGGATCCAGAGCGTCCATCACCATCATCTCCATGTTGTCAGCCACCTCCCCCTGTGTAGTTATGACTGCCCCTTGTATTAAAGCATCGCCACCCTCTGGCAGGACCTTTCCTTCGGGAGCCAGGGCAGCAGTCTGAGTGGTCTCCATGGAAACAACCTCGCCCTCCATGGTGATGGGCCAACTAACACTCCCGAATGCTTCTTCCCCTCGTTATATTCAGTTGGATGCTCGGTGTATCTGGTTGCTCTTCAGTCCCTGTGTGAACGTCCGTACGTGCTGAGCGCCGGGCTAATAGTTTTCTCCCGCTTAGGAAGAGTGGGCCTAACACAAAATGGCGGCCCTTAAGACCTAACGCGGCTGCGCAAACGCAGGACCCGAGGGAGTAAAGGGGA
>XM_039795122.1
AGGGAGTAAAGGGGAGTGGTCGAGCTGTGGCTGGGTGGTGGGCGCCAGATTTGAATTCAGCCGTGGGCACTGGGCGCGGCGACCGGAAAATTACTATTATCGATAGAATCGAGAGATTATCGATTACTTTTTGGACAAGGAATGCAGATCAATTTTGCGTGATAGAGTGACTAGACCTTCAACAACGTCTAGTCGCATTTAAATCGAGGTTACAAGTAATTTTGTGAATTAAAGCAATTCATAAAATAAGTCACAAGAGGGCAGTAGTAGGGCAGGCCTCACAACACAGGCTACACACCATCCTCAAGGATTTGAATATATAATTTAAAGGTTATCATAGTGTAGATTGAAGGTGGCATTTTTACATCCAAATAATGACTGTATTAGTGATATTCGGTTACCAACCGggcataacaaaaaaaaatgtaggcctactgtccCAAATCCTAATATTACCACCATAAACTGCTTGGAAGGCGAAATGAGCTGCTGGGCCCTCACACTCTGTGCAGTGTTATCAGTTTTTCTCGCTAGACTACTTCATGGCTCCAGATTTGCTGTTTGGTAATTTTGGTTGAACAGGTTAAATTAGAAATAGCCTATGCAACATTGAAAATAAATGGTAGGCCCTCGTGGTTTAGGAGTTTAACAGTGCTCACCATCAATCACACCATCCCTGGTTTAAGTCTGACTGGGCTCTTTTGTTGCACATCATCCCCCTGGTGATATCTGGACCGAGAGCTTCTAAAGTTAAACTGCTCATTTAAACAACATTGTAATCTCATCTGGtcttaacattttatttgatcTTTTGTTAGCTCACtgttcaacaacaaaaactcaTTGTCATTGTTAAGACGACCTGCTCTGAGAAGCaatatgtatattgtatctTAGTTACAATAACCTAGTCTATTACATCTGTACCCTAGCACTAAAATAACTGATGTCATATTACTCCACATGGAAAATCTGACATGGGTTCATAAGTGCAAAACAATTTATTTCTGGTTAGTTAACCGCTCAGATAGGAGACAGGCCTTTCAGTACCTGAAGAAACAGagataaaataaatatgatCCTCATCGAGAAATTGTGCGGATTTGGCCAGTTAGTAAAACTATTACAGTCATAAATCAATGTTGAATGATATAAATAATTTTCTAATCTGCCCTTGAAACCAgtgtaaataatacatttatatcaAAGTGTTTCAAACTGGGAATTGAGTTGCCTGGTTTGAATATCAAATATTTAAACACAATTCCCATGGAACTCCCTACACAGGGGAATTAGTATTATAAGATAGACAGAGATTGGTGCTTGTGGGTGTGTCAttgtctgttttattttatattttatgggtTCTGACCAAGTCTTACAGCTCATAATCAAGATGAATAATCCTCCAGGACTATTTGGGCCATTTCCCTGTATTGGTGAGACATCTTGCTTTGAATTACAGCACTTCTGAGCATCTTTTCCgcatataaaataaattattaatttcttacataACCAATAGAACATTTTGTTCATTTCAGCTGTTTCCATTGCAGTATATACTCATTTGTATGTCCCTGTCATAGGCTAGGATGCAGGGATGTAGGCCTAACAAATGTCAGTGGTCACTTTATTCCTCCATCTCTCGTCCTCTTCTTATTATATCACCATCTTTTTCTCATGGTTTTCCTCTCGGAGGGGAGGGGGCAGAGAAAAGGCGAGGTTCTGTTGTCAAATCTGTCAGTCTAGCCAGCCTGGCCCCTCCCACCTCAGTGGAGGCATTACATACTGCTGCTGCTCGTGCTCTTAGCAACGGTGCCTCAGCAACAGAGCCACGGCAACAGAGCTCCACGGCAACAGCGTGCCGTGTCTCCCCAATGGAGCTGCCATTGGGCGGACCAGCGCTCAGGCACTACACCCAGAGCAGACCGAGACCTCACCGACAAAAACTGAACTATCGTCCCAGCAGACCACAGGAGACGATAATTGAGAGTGACAATAAAGTCCTTGAGCTCATGGGGAGAGTTGATGAAGGAGTTGAAGAGTTCTTTACTAAGAGAGTACTTCCTACTGATACACTGAATAAGCAAGATGAGGAATCTATCACAGTGCACGAAGTGGCTCCTGCCAGCTCTGTCCCTTGTCCACCCCCGACGAAAACACTCAGAAGGAAGCTCGGAGATTTCTTTACACTCAAAAAGAGAAGAGGTCTGAAATCAGAAACAAGCCAGGAGGGGCGACCCAAAAAGGCCTCCATTGCTGATCTCATTCGCCCGCTCAGGGAGGTCGCCAGAgctgagaaagaaaaagacaaggacAAAGTCAAGGAACACGACAAGGAAAATGAaaaggagaaaatgaaagaacATCCGAGTGCTGTTACTGGAGAGTCAGCTGTTCAGGAGACACCTGGTGCTCCGCTGAGGGGTGAAACTGTGCCTCCCCGCCGAGCTCTCAGAGAAGGGAAGTCCCAGTCTCTCATTTTGCTGTCTGGATCagccacagcagggactactaATGCCAGAAACACTTCAAAGAAACAATTTGAAGGCCAACATAGTTTTGAACAGAAACTCCATCTCATGCTTCAACGTATTGGAGTTTCCAAAGTCCAGCCAGGGGagacacagAATCAGGAGGGAGAGATGAAAAAAGCAGAATCTGAAGGTACTATCATTGACAGTAAACCTGAGCCACCACCTACTTTCACAAAACCTCGAACAATGTCTGCATCATCAGATACAAGACATCAAATTCGCCCCAGCGTGTCAGCACACGAGTCAGCTGGGAAACCCGCTTTGCTTCCAAAGCCCCTTATCAAGCCAGGTCCACCCCCCACAACATCTGGCCGCAACACACCTGAGAACGAGCTAGCCCAAATACAGGAAGGGGAGACAAACACGCCCACTAAACTGAGTCCAACTGCAGCTCCGTCTACCCCTGCTGCTCCTGCACCCACTACTACCACCACTCCTACTGTCCCGACAATCTCAAACTCAGTCCCAGACTCAACCAATATTACAAGTACTGtacctccctctgacacagatATATGCGCTGACTCTGTTAACCCCGCTGCAGCAGCTACAACATCCACAAATATTACAGAGACTGACAGCAAACCTTCAATCCCTGAAGCTAATGCTACTATCACTGACTATGACTCCACCTTTCCGACATCCCTCACAAGCACCACTACACCCACAGAGCCCCCCACCACTGTTTTAGTTACTTCCACTTTCTCTGAGTCCATGACTCCAAGCCTCTCTGTCACTTCCGACGCAACAACAATAACTACGCCTTCCATTACCACCTCGGAAACGGTTTCTGCTCCCAGCAATGAAAGCTCGGTTTCCACAACATCAACAAATCTGTCAACTAAATCGACTTTCCCAGATCCAAATGGTGTCCCCTCCATCGACGCTACTCCTGCTGCTGGTGGTGATGCAGCTATTTCGGTCATCACCCCAGCTTCTTCACCCTCCACCAGCATATCAGATGTGCCACCAGGCTTGTCTGCCCCCGCTAATTCAGTTACTGAAGCTTGTTATGATTCCACTTCAGTCACCTCTACTAGCTCTGTACCTTTAGCTTCATCAGTCACAAAAACAACATCTCCACCTCCTTACTCCAGTGATACCATTTCAACTGCAGTTTCACCCGTCGCCTCAGTTACTTCTTCCTCCCCCCTGATCTCTTTTGCCCTTCCTcccaccacctccacctcttCCACCACCACTACAAGCCCAACATCCACCGACTGCGTGAACTCTATCTCTGCTTCCATCATTACTCACCCAGCCACCCCTGGCCCTACTGATATATCTGTTCCCTCCACTTCTTCCAGTGAAACAGACACCacttccaccaccaccaccagtttAAACCGTGCAGATACCACTTCCACCACCAGTTCAGCTACCACAGCTGCAATTTGCTCCCCACTCATGACTGACTCAGACACACCTTACACTAACAACGTCAGCACTACCCTCACACCAACTATTGATAACTCAAGTGCTACTTCTCCTCATTTGACCAGTCCAACCCCCTCTAATGGTCGTCCAGTCCAAGACAATGATTTGCAGACATCTCCTGAAGAAAGATCTAGTGTAGAGCCTGCAGAAAAGGGCACAGCAGATGAGGAGCTTGCGATGGTTCGAAACAGTGAGCAAACTGAGATGGATGAAAGCAAGAAAGTCGGCAACGGTGGGGAGAAGAGCGAGAATGAAAACGAGAAACCAACTCTCACTTCTGACAGCGAAGTCATAATAAAAGAAGTGCAGAAAGAAAGTGTGAAACCTGAATTAGACACAATGAAATCAGAAGTGAGAATGGCTGAACCTGCATCAGGGAAAGATGATGAGCTGTGCAGCGACAATGGGGAGATGGAAGGTCAAAAACAAGAAGAGGTTGATAAGtaaatcaaaaataaagaaattgctAAACACGGGACCAACTACTGTGACAGGGGCAGGAGAGGCCACAGTAAAGGGtaaaggaggggggggaggtGAATGATCCATGGCACTTCCTACAGGGACCACCACATTACAGCAGCACACCACAAAGGGTGGGCCACTGGACCAAAGAACTGAGATCCCCTTGTGTGTTGTAACCAACAAATCCAGCAGTgtctttgtcctttttttaacttttgtttgcatttttgcaTTGCACGTATGATTATGTAACATAAGACAACTACTGTGGTAAAATACACCATGTTTACAATAGATGGATAAGAGACATAGTTATGACTATTAAATGGAATATTGAATTAACTGA
>XM_039795123.1
AGGGAGTAAAGGGGAGTGGTCGAGCTGTGGCTGGGTGGTGGGCGCCAGATTTGAATTCAGCCGTGGGCACTGGGCGCGGCGACCGGAAAATTACTATTATCGATAGAATCGAGAGATTATCGATTACTTTTTGGACAAGGAATGCAGATCAATTTTGCGTGATAGAGTGACTAGACCTTCAACAACGTCTAGTCGCATTTAAATCGAGGTTACAAGTAATTTTGTGAATTAAAGCAATTCATAAAATAAGTCACAAGAGGGCAGTAGTAGGGCAGGCCTCACAACACAGGCTACACACCATCCTCAAGGATTTGAATATATAATTTAAAGGTTATCATAGTGTAGATTGAAGGTGGCATTTTTACATCCAAATAATGACTGTATTAGTGATATTCGGTTACCAACCGggcataacaaaaaaaaatgtaggcctactgtccCAAATCCTAATATTACCACCATAAACTGCTTGGAAGGCGAAATGAGCTGCTGGGCCCTCACACTCTGTGCAGTGTTATCAGTTTTTCTCGCTAGACTACTTCATGGCTCCAGATTTGCTGTTTGGTAATTTTGGTTGAACAGGTTAAATTAGAAATAGCCTATGCAACATTGAAAATAAATGGTAGGCCCTCGTGGTTTAGGAGTTTAACAGTGCTCACCATCAATCACACCATCCCTGGTTTAAGTCTGACTGGGCTCTTTTGTTGCACATCATCCCCCTGGTGATATCTGGACCGAGAGCTTCTAAAGTTAAACTGCTCATTTAAACAACATTGTAATCTCATCTGGtcttaacattttatttgatcTTTTGTTAGCTCACtgttcaacaacaaaaactcaTTGTCATTGTTAAGACGACCTGCTCTGAGAAGCaatatgtatattgtatctTAGTTACAATAACCTAGTCTATTACATCTGTACCCTAGCACTAAAATAACTGATGTCATATTACTCCACATGGAAAATCTGACATGGGTTCATAAGTGCAAAACAATTTATTTCTGGTTAGTTAACCGCTCAGATAGGAGACAGGCCTTTCAGTACCTGAAGAAACAGagataaaataaatatgatCCTCATCGAGAAATTGTGCGGATTTGGCCAGTTAGTAAAACTATTACAGTCATAAATCAATGTTGAATGATATAAATAATTTTCTAATCTGCCCTTGAAACCAgtgtaaataatacatttatatcaAAGTGTTTCAAACTGGGAATTGAGTTGCCTGGTTTGAATATCAAATATTTAAACACAATTCCCATGGAACTCCCTACACAGGGGAATTAGTATTATAAGATAGACAGAGATTGGTGCTTGTGGGTGTGTCAttgtctgttttattttatattttatgggtTCTGACCAAGTCTTACAGCTCATAATCAAGATGAATAATCCTCCAGGACTATTTGGGCCATTTCCCTGTATTGGTGAGACATCTTGCTTTGAATTACAGCACTTCTGAGCATCTTTTCCgcatataaaataaattattaatttcttacataACCAATAGAACATTTTGTTCATTTCAGCTGTTTCCATTGCAGTATATACTCATTTGTATGTCCCTGTCATAGGCTAGGATGCAGGGATGTAGGCCTAACAAATGTCAGTGGTCACTTTATTCCTCCATCTCTCGTCCTCTTCTTATTATATCACCATCTTTTTCTCATGGTTTTCCTCTCGGAGGGGAGGGGGCAGAGAAAAGGCGAGGTTCTGTTGTCAAATCTGTCAGTCTAGCCAGCCTGGCCCCTCCCACCTCAGTGGAGGCATTACATACTGCTGCTGCTCGTGCTCTTAGCAACGGTGCCTCAGCAACAGAGCCACGGCAACAGAGCTCCACGGCAACAGCGTGCCGTGTCTCCCCAATGGAGCTGCCATTGGGCGGACCAGCGCTCAGGCACTACACCCAGAGCAGACCGAGACCTCACCGACAAAAACTGAACTATCGTCCCAGCAGACCACAGGAGACGATAATTGAGAGTGACAATAAAGTCCTTGAGCTCATGGGGAGAGTTGATGAAGGAGTTGAAGAGTTCTTTACTAAGAGAGTACTTCCTACTGATACACTGAATAAGCAAGATGAGGAATCTATCACAGTGCACGAAGTGGCTCCTGCCAGCTCTGTCCCTTGTCCACCCCCGACGAAAACACTCAGAAGGAAGCTCGGAGATTTCTTTACACTCAAAAAGAGAAGAGGTCTGAAATCAGAAACAAGCCAGGAGGGGCGACCCAAAAAGGCCTCCATTGCTGATCTCATTCGCCCGCTCAGGGAGGTCGCCAGAgctgagaaagaaaaagacaaggacAAAGTCAAGGAACACGACAAGGAAAATGAaaaggagaaaatgaaagaacATCCGAGTGCTGTTACTGGAGAGTCAGCTGTTCAGGAGACACCTGGTGCTCCGCTGAGGGGTGAAACTGTGCCTCCCCGCCGAGCTCTCAGAGAAGGGAAGTCCCAGTCTCTCATTTTGCTGTCTGGATCagccacagcagggactactaATGCCAGAAACACTTCAAAGAAACAATTTGAAGGCCAACATAGTTTTGAACAGAAACTCCATCTCATGCTTCAACGTATTGGAGTTTCCAAAGTCCAGCCAGGGGagacacagAATCAGGAGGGAGAGATGAAAAAAGCAGAATCTGAAGGTACTATCATTGACAGTAAACCTGAGCCACCACCTACTTTCACAAAACCTCGAACAATGTCTGCATCATCAGATACAAGACATCAAATTCGCCCCAGCGTGTCAGCACACGAGTCAGCTGGGAAACCCGCTTTGCTTCCAAAGCCCCTTATCAAGCCAGGTCCACCCCCCACAACATCTGGCCGCAACACACCTGAGAACGAGCTAGCCCAAATACAGGAAGGGGAGACAAACACGCCCACTAAACTGAGTCCAACTGCAGCTCCGTCTACCCCTGCTGCTCCTGCACCCACTACTACCACCACTCCTACTGTCCCGACAATCTCAAACTCAGTCCCAGACTCAACCAATATTACAAGTACTGtacctccctctgacacagatATATGCGCTGACTCTGTTAACCCCGCTGCAGCAGCTACAACATCCACAAATATTACAGAGACTGACAGCAAACCTTCAATCCCTGAAGCTAATGCTACTATCACTGACTATGACTCCACCTTTCCGACATCCCTCACAAGCACCACTACACCCACAGAGCCCCCCACCACTGTTTTAGTTACTTCCACTTTCTCTGAGTCCATGACTCCAAGCCTCTCTGTCACTTCCGACGCAACAACAATAACTACGCCTTCCATTACCACCTCGGAAACGGTTTCTGCTCCCAGCAATGAAAGCTCGGTTTCCACAACATCAACAAATCTGTCAACTAAATCGACTTTCCCAGATCCAAATGGTGTCCCCTCCATCGACGCTACTCCTGCTGCTGGTGGTGATGCAGCTATTTCGGTCATCACCCCAGCTTCTTCACCCTCCACCAGCATATCAGATGTGCCACCAGGCTTGTCTGCCCCCGCTAATTCAGTTACTGAAGCTTGTTATGATTCCACTTCAGTCACCTCTACTAGCTCTGTACCTTTAGCTTCATCAGTCACAAAAACAACATCTCCACCTCCTTACTCCAGTGATACCATTTCAACTGCAGTTTCACCCGTCGCCTCAGTTACTTCTTCCTCCCCCCTGATCTCTTTTGCCCTTCCTcccaccacctccacctcttCCACCACCACTACAAGCCCAACATCCACCGACTGCGTGAACTCTATCTCTGCTTCCATCATTACTCACCCAGCCACCCCTGGCCCTACTGATATATCTGTTCCCTCCACTTCTTCCAGTGAAACAGACACCacttccaccaccaccaccagtttAAACCGTGCAGATACCACTTCCACCACCAGTTCAGCTACCACAGCTGCAATTTGCTCCCCACTCATGACTGACTCAGACACACCTTACACTAACAACGTCAGCACTACCCTCACACCAACTATTGATAACTCAAGTGCTACTTCTCCTCATTTGACCAGTCCAACCCCCTCTAATGGTCGTCCAGTCCAAGACAATGATTTGCAGACATCTCCTGAAGAAAGATCTAGTGTAGAGCCTGCAGAAAAGGGCACAGATGAGGAGCTTGCGATGGTTCGAAACAGTGAGCAAACTGAGATGGATGAAAGCAAGAAAGTCGGCAACGGTGGGGAGAAGAGCGAGAATGAAAACGAGAAACCAACTCTCACTTCTGACAGCGAAGTCATAATAAAAGAAGTGCAGAAAGAAAGTGTGAAACCTGAATTAGACACAATGAAATCAGAAGTGAGAATGGCTGAACCTGCATCAGGGAAAGATGATGAGCTGTGCAGCGACAATGGGGAGATGGAAGGTCAAAAACAAGAAGAGGTTGATAAGtaaatcaaaaataaagaaattgctAAACACGGGACCAACTACTGTGACAGGGGCAGGAGAGGCCACAGTAAAGGGtaaaggaggggggggaggtGAATGATCCATGGCACTTCCTACAGGGACCACCACATTACAGCAGCACACCACAAAGGGTGGGCCACTGGACCAAAGAACTGAGATCCCCTTGTGTGTTGTAACCAACAAATCCAGCAGTgtctttgtcctttttttaacttttgtttgcatttttgcaTTGCACGTATGATTATGTAACATAAGACAACTACTGTGGTAAAATACACCATGTTTACAATAGATGGATAAGAGACATAGTTATGACTATTAAATGGAATATTGAATTAACTGA

Function

NR:

description
PREDICTED: mucin-5AC-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU40234 False 482 lncRNA 0.56 2 27456416 27458301
XM_039795122.1 True 4791 mRNA 0.45 8 27458287 27464759
XM_039795123.1 False 4788 mRNA 0.45 8 27458287 27464759

Neighbor

gene id symbol gene type direction distance location
rab27a rab27a coding upstream 30714 27410828 ~ 27425702 (+)
ccpg1 NA coding upstream 53102 27391122 ~ 27403314 (+)
prtga prtg,LOC102785529 coding upstream 67049 27356268 ~ 27389367 (+)
mns1 mns1,LOC102786898 coding upstream 168860 27281412 ~ 27287556 (+)
znf280d znf280d coding upstream 177015 27261555 ~ 27279401 (+)
nudt21 nudt21 coding downstream 3106 27467865 ~ 27472009 (+)
tradd tradd coding downstream 25254 27490013 ~ 27499955 (+)
gnao1b gnao1,LOC103374184,LOC101483250 coding downstream 36407 27501166 ~ 27509230 (+)
thap11 thap11 coding downstream 83695 27548454 ~ 27552229 (+)
nrn1lb nrn1l,LOC101167108,LOC107381583,LOC103366277 coding downstream 90434 27555193 ~ 27560381 (+)
G30287 ctcf,LOC103374180,LOC104965832,LOC102192328 non-coding upstream 445 27451338 ~ 27455971 (+)
G30280 NA non-coding upstream 156849 27298829 ~ 27299567 (+)
G30235 cgnl1 non-coding upstream 324508 27130176 ~ 27131908 (+)
G30148 aqp9 non-coding upstream 426862 27016958 ~ 27029554 (+)
G30124 NA non-coding upstream 563851 26891684 ~ 26892565 (+)
G30364 NA non-coding downstream 22045 27486804 ~ 27487597 (+)
G30423 NA non-coding downstream 172100 27636859 ~ 27637082 (+)
G30428 NA non-coding downstream 198441 27663200 ~ 27663466 (+)
G30461 NA non-coding downstream 346369 27811128 ~ 27811547 (+)
G30518 NA non-coding downstream 432918 27897677 ~ 27898381 (+)
vrk3 NA other upstream 16002 27426288 ~ 27440414 (+)
LOC120555577 NA other upstream 46166 27409040 ~ 27410250 (+)
nedd4a nedd4,LOC103371920,LOC102785817 other upstream 104579 27318370 ~ 27351837 (+)
LOC120556198 LOC103371916,LOC104965843 other upstream 140235 27295757 ~ 27316181 (+)
nfat5b nfat5 other upstream 1528690 25883454 ~ 25927726 (+)
G30295 NA other downstream 1019 27465778 ~ 27467021 (+)
ogfod1 ogfod1,LOC102779874 other downstream 8906 27473665 ~ 27486769 (+)
G30366 NA other downstream 22918 27487677 ~ 27488791 (+)
LOC120555373 LOC102214634,LOC101478275,LOC102310185,LOC103366289 other downstream 335709 27800468 ~ 27807464 (+)
LOC120555397 LOC100695720,LOC100703698,LOC102797576,LOC101469320,LOC102211850,LOC101061652 other downstream 496161 27960920 ~ 27963055 (+)

Expression


Co-expression Network