G30577 (mc1r)


Basic Information

Item Value
gene id G30577
gene name mc1r
gene type unknown
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 28001640 ~ 28002470 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU40633
ACCCTCTCATGCCTCCGGCCCACCAAGCAAGACCGTTCATGTGATTTTGCCTATCAATTATTTTCTTCAGTCTTCCGGACATTTATTTTGGGGGGAGTCATTCACACACAATGGCACCATTTAGACAGTAACCAGTGTTTTGATATGATTCATGTTATTTATAGGCTCACTACAATGTTTTTCTCATATAGGCCTATGTCATTTCCTGCCCTTTGCTTGAACAAAGTAGCCTATCTAGGTCAATTCAttgcagaataaaataaattgtatttgtGTTCTGGTTCGCCTTAGTACTACAGAAGGCCTTTTTCTTTACTTGTGACTCTCTTTACAGCCATCTGAAGGCAGCAGGCATCTGTTCAGTCTCTCTAACTGGAGTGACGATGTCACTGCCAAGCCACAGCTTCTGACACAATGTACATCATTCAAGAAGAAGAGGTACTGACAACCTGAGGCTTTTGTTACTGTCCTAAATGTCACACACCGAAGCACCAAGAACACAGGACCAACTCCTGCAGAGTTTTACGCAGCTCGTGGCTGCGGTAGGCGTAAATGAGCGGGTCGATGAGCGAGTTGCAGATGATAAGGATGAGGAAAAGGTTGAAGTTCCGGAAGAAACAGTTGCAGAAGGGGCTAGTGGGGCAggtgaggatgaggatgaggtgGAGGAAGAAGGGGCCCCAGCATATAATGAATACCCCGAGCAGGATGGTGAGGGTCATCGCTCCCTTCATGCTTGTAGATTGGCGCCTGCTTTTGTGGAAAACCACGATGCGCCGGGAATGCAAGTGCGCCAGGAGGAACATGTGCAGGTACAGCACGGCGTTAAAC

Function

symbol description
mc1r Predicted to enable melanocyte-stimulating hormone receptor activity. Predicted to be involved in adenylate cyclase-activating G protein-coupled receptor signaling pathway and regulation of metabolic process. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Located in plasma membrane. Is expressed in several structures, including endocrine system; female organism; integument; male organism; and nervous system. Human ortholog(s) of this gene implicated in familial melanoma; major depressive disorder; melanoma; oculocutaneous albinism type II; and pigmentation disease. Orthologous to human MC1R (melanocortin 1 receptor).

NR:

description
PREDICTED: melanocyte-stimulating hormone receptor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU40633 True 831 TUCP 0.47 1 28001640 28002470

Neighbor

gene id symbol gene type direction distance location
trnal-uaa_2 NA coding downstream 121427 27880131 ~ 27880213 (-)
LOC120556190 LOC104927843,LOC104965371,LOC100704236 coding downstream 130383 27863663 ~ 27871257 (-)
kif7 kif7 coding downstream 146053 27841587 ~ 27855587 (-)
si:ch211-122f10.4 LOC104945215,LOC102776050,LOC102212265,LOC101480742 coding downstream 347232 27649504 ~ 27654408 (-)
gfod2 gfod2,LOC102778057 coding downstream 454836 27541636 ~ 27546804 (-)
foxf1 foxf1 coding upstream 90588 28093058 ~ 28097147 (-)
irf8 irf8 coding upstream 196640 28199110 ~ 28203878 (-)
dusp22a LOC104927513,LOC103374648 coding upstream 203256 28205726 ~ 28224206 (-)
LOC120555377 LOC101062555,LOC102216107,LOC102302772,LOC101473643 coding upstream 223154 28225624 ~ 28227538 (-)
gse1 gse1 coding upstream 237060 28239530 ~ 28420256 (-)
G30576 mc1r non-coding downstream 212 28001197 ~ 28001428 (-)
G30551 LOC102797876,LOC102077336,LOC101469017,LOC102307906,LOC103372225 non-coding downstream 44016 27956247 ~ 27957624 (-)
G30519 NA non-coding downstream 103255 27897943 ~ 27898385 (-)
G30517 NA non-coding downstream 105799 27895529 ~ 27895841 (-)
LOC120556451 NA non-coding downstream 162944 27828047 ~ 27838696 (-)
G30579 NA non-coding upstream 8530 28011000 ~ 28019075 (-)
G30586 NA non-coding upstream 34664 28037134 ~ 28038207 (-)
G30634 NA non-coding upstream 222623 28225093 ~ 28225447 (-)
G30644 NA non-coding upstream 340230 28342700 ~ 28392518 (-)
G30691 NA non-coding upstream 666128 28668598 ~ 28668964 (-)
G30465 furin,LOC102777676 other downstream 229830 27766831 ~ 27771810 (-)
G30422 got2 other downstream 368018 27626893 ~ 27633622 (-)
G30319 NA other downstream 685482 27310171 ~ 27316158 (-)
tcf12 tcf12,LOC103372397 other downstream 748557 27164599 ~ 27253083 (-)
atxn1l atxn1l,LOC102793200 other downstream 1186690 26801793 ~ 26814950 (-)
dbndd1 dbndd1,LOC103136566 other upstream 44289 28046759 ~ 28073479 (-)
LOC120555801 LOC103366895,LOC102194278,LOC102079963,LOC102301182,LOC101475385,LOC102792507 other upstream 445486 28447956 ~ 28550000 (-)
G30693 NA other upstream 666721 28669191 ~ 28669868 (-)
mafa maf,LOC101477682,LOC100702616,LOC102790406,LOC102298902,LOC104927625,LOC102192535,LOC105919746 other upstream 767531 28770001 ~ 28846965 (-)
LOC120555471 hipk3 other upstream 1215383 29217853 ~ 29269183 (-)

Expression


Co-expression Network