LOC120555801 (LOC103366895,LOC102194278,LOC102079963,LOC102301182,LOC101475385,LOC102792507)



Basic Information


Item Value
gene id LOC120555801
gene name LOC103366895,LOC102194278,LOC102079963,LOC102301182,LOC101475385,LOC102792507
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 28447956 ~ 28550000 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence


>TU40758
aaaaaataaaaaaaaaaaaaaaaaaaaatcaggggTCTAACCAAAGTTCAAAGACGATTAAAAAGTTTTcattaggagaaaaacaaatcatttaaaggtcctatgacatggtgctctttggatgcttttatatagaccttagtggtcccctaatactatatctgaagtctctctcccgaaattcagccttggtgcagaattacagccactagagccagtcccacaatgagctttccttagtatgtgccatttctgtgtctgtagctattgaggaggagagagggggggcaaggtggagagggGTGTGGccccccttatgacctcataaggagaaagattccagatcggcccatctgagctttcattttctcaaaggcagagcaggatacccagggctcggtttacacctatcgccatttctagaacctgggggaccataggcaggctgggggaacgcatatttatgttaaaaaacctcataaagtgaaattgtcatgccatgggacctttaagtataaTGGCATCATGCATATTTCATCAAATCATAAAGGCTGTATTTATAAAGAATGGTAATACTGTACTAGGGATAACAATGAACCCCTTGAGCAGGGTTGCTGTCCCACCAAGGACAATACATTTAGTAGCAATGTTTGCCAAGTTAAATTTACCTCAAATTACTTGCAGaccttttctcttcttcttcaggtTGATCGTTGTAAAACAGATCTTATTTTCACAGTAATTATTTTCTAACGGATACATTTAAACTGAAAAGTATTATTGTACATTTGCAGATTCAACACACAATGCATATTCATTTCTAATGTTCTTGATTGCACTGTATAACTCTGTTTTTCATAGAGCAGAGTTATAGATAAAGTAGCTATTACACGGACGACTGTGCTTAACCGGCTGTAAAGGTGATAATATCCTCAGTCACCACTGTGCGAGAATAGTGCTGCTTCTGACTCCACATGATCTTAATGCTTTGAACCACCTGTCTGATATTTCCATCCGTAGATGGCAAACTGTTGTCTGATTACTTCATTTCCATACCATAAGCCTTGATTGATGTTATACCACCAGTCTGCCCTCTCCAGACATCAGCTATtccatatacattttttttattaattcactGGCAGGTAGTCTTTCAAACCTGGTTCTGACCATTTGTGTTATCATGTACTTGGCTTGCATGTTGTAGTCTAATGAgtttatttaaaatgcaaatattCATTAGTCTTTATTTAGGTGTACAATATAATCAGTGTTTCTGGCCATGTATAAAGTTGAGACTCCAGTTTAGAGAGTAGAGGATCAACAGGCAGGATGCTTTTAATTCCAGTGCTCTGACTGTAATCTGAACATCACTTTGTCCTTTGTTTACATCATTACGGCATCAGAAGGAGGCTCTCCATTTAATGATGCCATCAGCTTGTAATGTGGATAAAGACTATTCCTGTAAGCACTTTGTTTTTGGAGCAGTTCCGCTGTGAATCCATCAGAAATGTTTGTCTTTAAATCTGACATGGTTTTTAAGGCTGTACCTGGTGGTGTTAGAATAGTTTTGCTAAAGTAAAAGATAGCCAGCTCTGAGttgatattttctttctctaCATTTATCCCAAACATATCTGCATTTTCTCAcctgtttgttttaaatacacTGTGGATATAAAAGGTCTTGCCACAGCAGAGCTtactgtgtgtgatgttgttAAATCAGCGGGCATTTGCATATTGTCTGCTTTGGTCCTTGTACACACTCAGAATTCATGCTGTGAAAAACCAGAAAGCATTAACTATCCAGGCTGAGACTTCTGATGTAGGTACTGAGAGATGCATCGATACAAATTTATCACTGCCAACACAGATTGTGTTTATTAGATTTGAACATCCTAGCAAGATCTGCTTTGTTAACAACAATGTATAGTTTGAGATTGCTTGACATAAATGAGTGTTTGAATATGATGCTTTCTCTATTTTTTCATCACATCTTTAGTTTAAGTTCCCAAAACGTATGGAAACTGTAAAGTTTTAGCCAGGTATCTCCCACACTGCTGTTGTTATCGGTGCATCCCAACCATACAGAAAATGAAGGGCTTCTGGTCTGATTTGATTTTCACCTCAATGTATGCATAACATTTTGCATTAGAACTCACTGATATATAGatatgtatgtaaatgtgttAATGTTTCATATTGAATGTCTTCCTGTTACTGTTCTATGCTGTGTGTACTTTTGAAGCATTTGAAAGGCAGAATTGAGAGATGTGAATTGTAAAAGTTTGTAATCTGACGATCCGGTGAACTTGGAAAACAAAAACCCAAACTTAGTTGATTCCTAAAGCACACTCACTATtagatttaattattattaaaccTTTCTTCAATAGAATTTAATATAATGCTTGTTAAATAGGTAATACCCCTAACTGTGATCATTTGTCTCAATTGATGTTGCAGAAGATATTGTGGAAGTTTCCTGAAATGAATACATTGGAAACCCCATGTGCACAAATATACTGTAGGTGTACACTGCCTTTCTAAAATATGGGTTTACTTAGGGACAAGTTGCAGTGATGGAAGAATGCAAGTGCTTGTTTGTTAGGAAATAATGTGATGATGGATACAAATATGTGGACTCTGAACAATGACAAAGGGACATATATGGGCAAGATAGGTAACATGATACCTTTTTGCATGAGCGACTTATGATTGTAGCTGATACTGAGCAGACCAAGCAGGTCTAATGTACTTTGAGTGAGAACAAGGAAAGGGGCAAGGTTGCAagtcactatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgaaaagctTCTCCTGTAAATAGCTACTAACTAAGATGTTTTCCATTCTTTGTCCCATTTTACTGCTTTTTCCTCACGGTGGAAAGCCTAAATCACCTCTGTCTTATTTATAACCATTGTATGGCACTGCATTTATTTCAGTGAGTTTTTGGTTTTTGTAAATCCTATGCAACCCCTTATGTGTTCTAACATCTGCAGTCATCTGACTGTGTTATTCTGCATTGTGTGCcgtcttttattttctcttttgcaGTGAACGTTAACCATTTGCATGTACAGCAGTAACATACCTTTATTTTTACGTTTAGTTTTTAATGTAACCTGTATTTTGTTAAAACAATGGTTAATAAAGGAATTTGTGA
>XM_039794885.1
ATGGAAACGAGCCATGGTCGCTGCTAAGAGGAAAGTCATATGCCTAttctctttattattattatttttgtagcAGACAATGGCATATATAATATTCACACGGCGGGATTTAAAGTGACTGATCTGCAGAAGGAAACGGCTTGGTTTATTGGTCCAGAGCTGCACAGTGTCAACCTCTGACGCAGCCGGAGCACCTATCCGCGGGGGGGGGGACAGTGACACCTGACGGCTCCATCTCTCGACACGCCGGTCTTTCCCATCACGACCGCTTCGGCTCTGCAGTGCAGGAACTGCTGCGTTTTATGGAAGCGGAGTCTGTGCATCCTGTCGTGATCATGCTGCCCCCAAAGAGTTGCCTGCCGAGGAACTACAGCTGCATAGCCGGACTGTTCGGAAGCCTGGCAGAGGCAAACCCGCGGCTTGAAGATGGGGATGATTTGGATATGATCAACGGTACTTGTGAAACCACCGAGAGCCCAGTTGTGGAAGAGAGACCACGGGGCAGAGAGGTCTCCCTGAAGCCTTCACAGAGTCCAAATCTGCGTCGGAGGTGCAAGTCGCTGCCCACACCCACAGAGAGAGCAAAGTTAGAGATCGCCCGCAGAAGAAGCCCGACCAGTCAGAAAACGGTCCGGTTCGCCGACTCACTGGGCCTGGAGCTCATTTCCGTGAAGCACTTCGATGATACAGATGAGCCACAAGTGCCGGAGCGCATATTGGCCAAACTAGCCAAAGGACCCGTCCACCTTAATCATTTGAACACAAAGTTCCCCCGTGTTCCTGCGCAGTCTACGTTCATGGAGTTGCTGTTCACCAACCCAGGCACACTACCCGGCTTTGAGCAGAAAGTGAGGGAGGTGAAAGTCATGTTAGAGTCCGTTGAGGTAGATGAATTCAGCCTCTCCGGGTTTGTGCGCGTGTTGAATCTGGCTTTCGAAAAGAGCGTCTCTTTGCGTTATTCTCTTAACAACTGGATTACATGCATGGACAGCCTGGCGTCCTATGTTCCCGACTCAAGCGAGGGTGACACTGATAAGTTCTGTTTCAAGATAGTCATGCCTACTTACCTCGACAACGGAGGCACATTTCAGTTTGCAATTAAATACTGTGTCGGCGGGCAAGAGTTCTGGGACAATAATAATGGGAACAACTACAAAGTGCGGCGTAACCGGTTCAAGATGTCCCCACCCCGGGAATGGGAGAATGGATGGATTCACTTTATCTGAGCTTTGTCTGCAGTGACACATTGCGTGCGTAATTTGTGCGTAACTGATCCCCGGGTACTTTAAGTTTGACTGTTGCTtgttaaagattatttttttctttcccctgCCATTGACAGCTATACACACATGCTCTGACTCTGACAACAATTTCCAAAATGATTCAAACAGGCTATTTGCCCcgctgtggtaacagattgatTGGTGAAGACTCGGAAGGGATTCTGTTAGAACATTTGCCTTTACGTCAGGGCTCTGTACAGCTTGGTGCCCTTTGGGGGGCAATGTCACGTTATGTAATGTAGAAACACGTGCCACGGAAAACGTGCACACAATGCCGACTTGAGGCATCACGGCTCCTCTCAGGGGATGCTGTAAAATGGTTTGGTGGCACGGAGATGTTTAAATTATCTGTTTGTTTTGCATGCGTGCAAAAATATCGGCTGGATGGGAAGCAGAAAGCATCACATCTTGGCTGATATGGATGCCAAGCGAACCTAGTAGCATACTCTGGTTGTCTCCTGCAGGCTgggagagacatacacacactgacttacTGAGTTGACAGACCGAAATATGTGGCAGgttattatgttaaaaaaagagttGTCTAATTTCCCACTGTCATGCcattgaaaaatgccttattttAAGCCATGATGTTGGAATTAGATTAAATGCATTCAATGGTTATCATCTTCACTGGGAATTAGTGTCCATATACCTGTTGGCTTTCAATCCAGGGACATACTCATAAAATATTCAACATCCATTCTTTTGCTGAATTAATGTCAAAAATGTTATGGTtttgcccaaaaaaaaaaaaaaatcaggggTCTAACCAAAGTTCAAAGAC

Function


GO:

id name namespace
GO:0005977 glycogen metabolic process biological_process

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU40758 True 3221 lncRNA 0.36 2 28447956 28550000
XM_039794885.1 False 2079 mRNA 0.48 1 28451122 28453200

Neighbor


gene id symbol gene type direction distance location
gse1 gse1 coding downstream 27700 28239530 ~ 28420256 (-)
LOC120555377 LOC101062555,LOC102216107,LOC102302772,LOC101473643 coding downstream 220418 28225624 ~ 28227538 (-)
dusp22a LOC104927513,LOC103374648 coding downstream 223750 28205726 ~ 28224206 (-)
irf8 irf8 coding downstream 244078 28199110 ~ 28203878 (-)
foxf1 foxf1 coding downstream 350809 28093058 ~ 28097147 (-)
ppfibp2a ppfibp2,LOC102297953,LOC101477983 coding upstream 366661 28916661 ~ 28937943 (-)
syt9a LOC103368648,LOC102215875,LOC102789824,LOC101479370,LOC100702345 coding upstream 391368 28941368 ~ 28963673 (-)
spon1a spon1 coding upstream 435561 28985561 ~ 29064557 (-)
LOC120555430 galnt8,LOC103358106 coding upstream 576788 29126788 ~ 29136061 (-)
kiaa1549lb kiaa1549l coding upstream 604972 29154972 ~ 29216732 (-)
G30644 NA non-coding downstream 55438 28342700 ~ 28392518 (-)
G30634 NA non-coding downstream 222509 28225093 ~ 28225447 (-)
G30586 NA non-coding downstream 409749 28037134 ~ 28038207 (-)
G30579 NA non-coding downstream 428881 28011000 ~ 28019075 (-)
G30576 mc1r non-coding downstream 446528 28001197 ~ 28001428 (-)
G30691 NA non-coding upstream 118598 28668598 ~ 28668964 (-)
G30759 NA non-coding upstream 590354 29140354 ~ 29140638 (-)
G30852 pax6 non-coding upstream 836757 29386757 ~ 29396683 (-)
G30898 NA non-coding upstream 1065440 29615440 ~ 29616375 (-)
G30905 NA non-coding upstream 1111668 29661668 ~ 29662088 (-)
dbndd1 dbndd1,LOC103136566 other downstream 374477 28046759 ~ 28073479 (-)
G30577 mc1r other downstream 445486 28001640 ~ 28002470 (-)
G30465 furin,LOC102777676 other downstream 676146 27766831 ~ 27771810 (-)
G30422 got2 other downstream 814334 27626893 ~ 27633622 (-)
G30319 NA other downstream 1131798 27310171 ~ 27316158 (-)
G30693 NA other upstream 119191 28669191 ~ 28669868 (-)
mafa maf,LOC101477682,LOC100702616,LOC102790406,LOC102298902,LOC104927625,LOC102192535,LOC105919746 other upstream 220001 28770001 ~ 28846965 (-)
LOC120555471 hipk3 other upstream 667853 29217853 ~ 29269183 (-)
prrg4 NA other upstream 760550 29310550 ~ 29314709 (-)
elp4 elp4,LOC103373817 other upstream 852035 29402035 ~ 29461236 (-)

Expression



Co-expression Network