LOC120555801 (LOC103366895,LOC102194278,LOC102079963,LOC102301182,LOC101475385,LOC102792507)
Chromosome Information
Item |
Value |
chromosome id |
NC_053114.1 |
NCBI id |
CM020911.1
|
chromosome length |
46923577 |
location |
28447956 ~ 28550000 (-) |
genome version |
GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
Sequence
>TU40758
aaaaaataaaaaaaaaaaaaaaaaaaaatcaggggTCTAACCAAAGTTCAAAGACGATTAAAAAGTTTTcattaggagaaaaacaaatcatttaaaggtcctatgacatggtgctctttggatgcttttatatagaccttagtggtcccctaatactatatctgaagtctctctcccgaaattcagccttggtgcagaattacagccactagagccagtcccacaatgagctttccttagtatgtgccatttctgtgtctgtagctattgaggaggagagagggggggcaaggtggagagggGTGTGGccccccttatgacctcataaggagaaagattccagatcggcccatctgagctttcattttctcaaaggcagagcaggatacccagggctcggtttacacctatcgccatttctagaacctgggggaccataggcaggctgggggaacgcatatttatgttaaaaaacctcataaagtgaaattgtcatgccatgggacctttaagtataaTGGCATCATGCATATTTCATCAAATCATAAAGGCTGTATTTATAAAGAATGGTAATACTGTACTAGGGATAACAATGAACCCCTTGAGCAGGGTTGCTGTCCCACCAAGGACAATACATTTAGTAGCAATGTTTGCCAAGTTAAATTTACCTCAAATTACTTGCAGaccttttctcttcttcttcaggtTGATCGTTGTAAAACAGATCTTATTTTCACAGTAATTATTTTCTAACGGATACATTTAAACTGAAAAGTATTATTGTACATTTGCAGATTCAACACACAATGCATATTCATTTCTAATGTTCTTGATTGCACTGTATAACTCTGTTTTTCATAGAGCAGAGTTATAGATAAAGTAGCTATTACACGGACGACTGTGCTTAACCGGCTGTAAAGGTGATAATATCCTCAGTCACCACTGTGCGAGAATAGTGCTGCTTCTGACTCCACATGATCTTAATGCTTTGAACCACCTGTCTGATATTTCCATCCGTAGATGGCAAACTGTTGTCTGATTACTTCATTTCCATACCATAAGCCTTGATTGATGTTATACCACCAGTCTGCCCTCTCCAGACATCAGCTATtccatatacattttttttattaattcactGGCAGGTAGTCTTTCAAACCTGGTTCTGACCATTTGTGTTATCATGTACTTGGCTTGCATGTTGTAGTCTAATGAgtttatttaaaatgcaaatattCATTAGTCTTTATTTAGGTGTACAATATAATCAGTGTTTCTGGCCATGTATAAAGTTGAGACTCCAGTTTAGAGAGTAGAGGATCAACAGGCAGGATGCTTTTAATTCCAGTGCTCTGACTGTAATCTGAACATCACTTTGTCCTTTGTTTACATCATTACGGCATCAGAAGGAGGCTCTCCATTTAATGATGCCATCAGCTTGTAATGTGGATAAAGACTATTCCTGTAAGCACTTTGTTTTTGGAGCAGTTCCGCTGTGAATCCATCAGAAATGTTTGTCTTTAAATCTGACATGGTTTTTAAGGCTGTACCTGGTGGTGTTAGAATAGTTTTGCTAAAGTAAAAGATAGCCAGCTCTGAGttgatattttctttctctaCATTTATCCCAAACATATCTGCATTTTCTCAcctgtttgttttaaatacacTGTGGATATAAAAGGTCTTGCCACAGCAGAGCTtactgtgtgtgatgttgttAAATCAGCGGGCATTTGCATATTGTCTGCTTTGGTCCTTGTACACACTCAGAATTCATGCTGTGAAAAACCAGAAAGCATTAACTATCCAGGCTGAGACTTCTGATGTAGGTACTGAGAGATGCATCGATACAAATTTATCACTGCCAACACAGATTGTGTTTATTAGATTTGAACATCCTAGCAAGATCTGCTTTGTTAACAACAATGTATAGTTTGAGATTGCTTGACATAAATGAGTGTTTGAATATGATGCTTTCTCTATTTTTTCATCACATCTTTAGTTTAAGTTCCCAAAACGTATGGAAACTGTAAAGTTTTAGCCAGGTATCTCCCACACTGCTGTTGTTATCGGTGCATCCCAACCATACAGAAAATGAAGGGCTTCTGGTCTGATTTGATTTTCACCTCAATGTATGCATAACATTTTGCATTAGAACTCACTGATATATAGatatgtatgtaaatgtgttAATGTTTCATATTGAATGTCTTCCTGTTACTGTTCTATGCTGTGTGTACTTTTGAAGCATTTGAAAGGCAGAATTGAGAGATGTGAATTGTAAAAGTTTGTAATCTGACGATCCGGTGAACTTGGAAAACAAAAACCCAAACTTAGTTGATTCCTAAAGCACACTCACTATtagatttaattattattaaaccTTTCTTCAATAGAATTTAATATAATGCTTGTTAAATAGGTAATACCCCTAACTGTGATCATTTGTCTCAATTGATGTTGCAGAAGATATTGTGGAAGTTTCCTGAAATGAATACATTGGAAACCCCATGTGCACAAATATACTGTAGGTGTACACTGCCTTTCTAAAATATGGGTTTACTTAGGGACAAGTTGCAGTGATGGAAGAATGCAAGTGCTTGTTTGTTAGGAAATAATGTGATGATGGATACAAATATGTGGACTCTGAACAATGACAAAGGGACATATATGGGCAAGATAGGTAACATGATACCTTTTTGCATGAGCGACTTATGATTGTAGCTGATACTGAGCAGACCAAGCAGGTCTAATGTACTTTGAGTGAGAACAAGGAAAGGGGCAAGGTTGCAagtcactatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgaaaagctTCTCCTGTAAATAGCTACTAACTAAGATGTTTTCCATTCTTTGTCCCATTTTACTGCTTTTTCCTCACGGTGGAAAGCCTAAATCACCTCTGTCTTATTTATAACCATTGTATGGCACTGCATTTATTTCAGTGAGTTTTTGGTTTTTGTAAATCCTATGCAACCCCTTATGTGTTCTAACATCTGCAGTCATCTGACTGTGTTATTCTGCATTGTGTGCcgtcttttattttctcttttgcaGTGAACGTTAACCATTTGCATGTACAGCAGTAACATACCTTTATTTTTACGTTTAGTTTTTAATGTAACCTGTATTTTGTTAAAACAATGGTTAATAAAGGAATTTGTGA
>XM_039794885.1
ATGGAAACGAGCCATGGTCGCTGCTAAGAGGAAAGTCATATGCCTAttctctttattattattatttttgtagcAGACAATGGCATATATAATATTCACACGGCGGGATTTAAAGTGACTGATCTGCAGAAGGAAACGGCTTGGTTTATTGGTCCAGAGCTGCACAGTGTCAACCTCTGACGCAGCCGGAGCACCTATCCGCGGGGGGGGGGACAGTGACACCTGACGGCTCCATCTCTCGACACGCCGGTCTTTCCCATCACGACCGCTTCGGCTCTGCAGTGCAGGAACTGCTGCGTTTTATGGAAGCGGAGTCTGTGCATCCTGTCGTGATCATGCTGCCCCCAAAGAGTTGCCTGCCGAGGAACTACAGCTGCATAGCCGGACTGTTCGGAAGCCTGGCAGAGGCAAACCCGCGGCTTGAAGATGGGGATGATTTGGATATGATCAACGGTACTTGTGAAACCACCGAGAGCCCAGTTGTGGAAGAGAGACCACGGGGCAGAGAGGTCTCCCTGAAGCCTTCACAGAGTCCAAATCTGCGTCGGAGGTGCAAGTCGCTGCCCACACCCACAGAGAGAGCAAAGTTAGAGATCGCCCGCAGAAGAAGCCCGACCAGTCAGAAAACGGTCCGGTTCGCCGACTCACTGGGCCTGGAGCTCATTTCCGTGAAGCACTTCGATGATACAGATGAGCCACAAGTGCCGGAGCGCATATTGGCCAAACTAGCCAAAGGACCCGTCCACCTTAATCATTTGAACACAAAGTTCCCCCGTGTTCCTGCGCAGTCTACGTTCATGGAGTTGCTGTTCACCAACCCAGGCACACTACCCGGCTTTGAGCAGAAAGTGAGGGAGGTGAAAGTCATGTTAGAGTCCGTTGAGGTAGATGAATTCAGCCTCTCCGGGTTTGTGCGCGTGTTGAATCTGGCTTTCGAAAAGAGCGTCTCTTTGCGTTATTCTCTTAACAACTGGATTACATGCATGGACAGCCTGGCGTCCTATGTTCCCGACTCAAGCGAGGGTGACACTGATAAGTTCTGTTTCAAGATAGTCATGCCTACTTACCTCGACAACGGAGGCACATTTCAGTTTGCAATTAAATACTGTGTCGGCGGGCAAGAGTTCTGGGACAATAATAATGGGAACAACTACAAAGTGCGGCGTAACCGGTTCAAGATGTCCCCACCCCGGGAATGGGAGAATGGATGGATTCACTTTATCTGAGCTTTGTCTGCAGTGACACATTGCGTGCGTAATTTGTGCGTAACTGATCCCCGGGTACTTTAAGTTTGACTGTTGCTtgttaaagattatttttttctttcccctgCCATTGACAGCTATACACACATGCTCTGACTCTGACAACAATTTCCAAAATGATTCAAACAGGCTATTTGCCCcgctgtggtaacagattgatTGGTGAAGACTCGGAAGGGATTCTGTTAGAACATTTGCCTTTACGTCAGGGCTCTGTACAGCTTGGTGCCCTTTGGGGGGCAATGTCACGTTATGTAATGTAGAAACACGTGCCACGGAAAACGTGCACACAATGCCGACTTGAGGCATCACGGCTCCTCTCAGGGGATGCTGTAAAATGGTTTGGTGGCACGGAGATGTTTAAATTATCTGTTTGTTTTGCATGCGTGCAAAAATATCGGCTGGATGGGAAGCAGAAAGCATCACATCTTGGCTGATATGGATGCCAAGCGAACCTAGTAGCATACTCTGGTTGTCTCCTGCAGGCTgggagagacatacacacactgacttacTGAGTTGACAGACCGAAATATGTGGCAGgttattatgttaaaaaaagagttGTCTAATTTCCCACTGTCATGCcattgaaaaatgccttattttAAGCCATGATGTTGGAATTAGATTAAATGCATTCAATGGTTATCATCTTCACTGGGAATTAGTGTCCATATACCTGTTGGCTTTCAATCCAGGGACATACTCATAAAATATTCAACATCCATTCTTTTGCTGAATTAATGTCAAAAATGTTATGGTtttgcccaaaaaaaaaaaaaaatcaggggTCTAACCAAAGTTCAAAGAC
Function
GO:
id |
name |
namespace |
GO:0005977
|
glycogen metabolic process |
biological_process |
KEGG: NA
RNA
RNA id |
representative |
length |
rna type |
GC content |
exon number |
start site |
end site |
TU40758 |
True |
3221 |
lncRNA |
0.36 |
2 |
28447956 |
28550000 |
XM_039794885.1 |
False |
2079 |
mRNA |
0.48 |
1 |
28451122 |
28453200 |
Neighbor
gene id |
symbol |
gene type |
direction |
distance |
location |
gse1 |
gse1
|
coding |
downstream |
27700 |
28239530 ~ 28420256 (-) |
LOC120555377 |
LOC101062555,LOC102216107,LOC102302772,LOC101473643
|
coding |
downstream |
220418 |
28225624 ~ 28227538 (-) |
dusp22a |
LOC104927513,LOC103374648
|
coding |
downstream |
223750 |
28205726 ~ 28224206 (-) |
irf8 |
irf8
|
coding |
downstream |
244078 |
28199110 ~ 28203878 (-) |
foxf1 |
foxf1
|
coding |
downstream |
350809 |
28093058 ~ 28097147 (-) |
ppfibp2a |
ppfibp2,LOC102297953,LOC101477983
|
coding |
upstream |
366661 |
28916661 ~ 28937943 (-) |
syt9a |
LOC103368648,LOC102215875,LOC102789824,LOC101479370,LOC100702345
|
coding |
upstream |
391368 |
28941368 ~ 28963673 (-) |
spon1a |
spon1
|
coding |
upstream |
435561 |
28985561 ~ 29064557 (-) |
LOC120555430 |
galnt8,LOC103358106
|
coding |
upstream |
576788 |
29126788 ~ 29136061 (-) |
kiaa1549lb |
kiaa1549l
|
coding |
upstream |
604972 |
29154972 ~ 29216732 (-) |
G30644 |
NA
|
non-coding |
downstream |
55438 |
28342700 ~ 28392518 (-) |
G30634 |
NA
|
non-coding |
downstream |
222509 |
28225093 ~ 28225447 (-) |
G30586 |
NA
|
non-coding |
downstream |
409749 |
28037134 ~ 28038207 (-) |
G30579 |
NA
|
non-coding |
downstream |
428881 |
28011000 ~ 28019075 (-) |
G30576 |
mc1r
|
non-coding |
downstream |
446528 |
28001197 ~ 28001428 (-) |
G30691 |
NA
|
non-coding |
upstream |
118598 |
28668598 ~ 28668964 (-) |
G30759 |
NA
|
non-coding |
upstream |
590354 |
29140354 ~ 29140638 (-) |
G30852 |
pax6
|
non-coding |
upstream |
836757 |
29386757 ~ 29396683 (-) |
G30898 |
NA
|
non-coding |
upstream |
1065440 |
29615440 ~ 29616375 (-) |
G30905 |
NA
|
non-coding |
upstream |
1111668 |
29661668 ~ 29662088 (-) |
dbndd1 |
dbndd1,LOC103136566
|
other |
downstream |
374477 |
28046759 ~ 28073479 (-) |
G30577 |
mc1r
|
other |
downstream |
445486 |
28001640 ~ 28002470 (-) |
G30465 |
furin,LOC102777676
|
other |
downstream |
676146 |
27766831 ~ 27771810 (-) |
G30422 |
got2
|
other |
downstream |
814334 |
27626893 ~ 27633622 (-) |
G30319 |
NA
|
other |
downstream |
1131798 |
27310171 ~ 27316158 (-) |
G30693 |
NA
|
other |
upstream |
119191 |
28669191 ~ 28669868 (-) |
mafa |
maf,LOC101477682,LOC100702616,LOC102790406,LOC102298902,LOC104927625,LOC102192535,LOC105919746
|
other |
upstream |
220001 |
28770001 ~ 28846965 (-) |
LOC120555471 |
hipk3
|
other |
upstream |
667853 |
29217853 ~ 29269183 (-) |
prrg4 |
NA
|
other |
upstream |
760550 |
29310550 ~ 29314709 (-) |
elp4 |
elp4,LOC103373817
|
other |
upstream |
852035 |
29402035 ~ 29461236 (-) |
Expression