cdc42se2 (cdc42se2,LOC103398548)


Basic Information

Item Value
gene id cdc42se2
gene name cdc42se2,LOC103398548
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 32108572 ~ 32117250 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU41827
attctttAGCTTTCAGTCGATCTTACGATTTTACTCCGGCAAACCGGTCGCCATCTGGAGCGTGCTGCCCTGTGTTGGGAGAACAATTCTTGTGCCAACGGTTTACCCCGGAGAGACCATTGGTCTGTGTCTGTCATCAGTTTCCGGCGTGCGTTTGTGGCTCTGGTAACACTGAACAGGAAGACAGACGCAGAGAGACGTCTGCACCGAGAGAGGAAACTGCTGCGGCTTCTTCGTCGGCCTCAGAATGACTGAGTTCTGGGTTTGTTTCAGCTGCTGCATTGCAGAGCAGCCACAACCTAAACGGCGGCGACGGATCGATCGCTCCATGATCGGGGAGCCAACAAACTTTGTTCACACCACACACGTAGGCTCGGGGGACATGGGCCATGGATTGGCATCTGTGGACCTTGTTCAGGCCCAGATGAAATCTAAAGGGGGCTATGTGCATGGAGGATCTGAAGGTTCTCAGTTGTAACAAGCCCTTCACAGTCTTGTGGAAACTACTGTTGTTGATATGaggaagcattttcaaaaagcaGTTCTGTCTGTATCGGACACAGGACCAAAAGATGAAACTA
>TU41828
CCATTTGCTGCCATACTGTTGCACTGTAAAGAGTAACTGTTAAGAATAGATAAGAGGGTTTAGAAAGCTCATAATCTCAGTCAGACGTAtgcttgtgtgtatgcatgaggaaaatattttcaaaaatatttgcGGTTGTAGCCCATTTGGATGCctgtatttattttctgattTGTAAATGGACCTCATGGTGGCTGGGCCACGCTGGAGATTTGGAGCATTCAGTTTCCTTCTTTATTATCAGAGGTTTATCAAAGGACAGGTAGAGGTAGCAAGGCAAAAAGCGATATGTTCATTGTCTTATTCTGAGAAATACTCATGATCCTCTGAGTTGCTTTCAGGGTTGAAGATTGCTGTCTTGTAATAAACTTGAATGAGTAGAGTACACTGGATCATACATTGTACACTCACACTTGCTAGGGAATTTCGCATTGatttcaactgttttttttttgtttttttttatactcatTTAGATTAAACCATATAGAATTTTAATAAACTATAAACTTCCTAATCTGCCTTCTGAAgtcatgtttatttgttttaccgGTGACGTTTGGCAGCTTCACGCTGCAAATACTGAGCGTAGTGGTTCCAAGACTATTcatatttttctatgtcttttcttctttttccaagGCTTGTGTACCAGCAGTAGACCAAGAATTAAACTTGGAAGTAACCAAATCACACTGCAAACAGCGCCACAAATGTGGGTCAGGGTTGATAGAGCCAGCAGTATTCTCAAACCTGTAGTAAATCTACTGTatgaacatttctttttttggtttgttgtaCTGCTGTGCTGCCTTTCCCCTCACACAGTTTGTGTCACACACTGTTCCTTGTCATGACACCTCTTGACATAAAAATAATCTTTCTGTCATTTATTTGGCTGATACACTCACAATCCTGTCAGAAAGGTATCTTGTCCCACCGGAGGTCTTAGTAGTTTTGCGTTTCTTTTGAAAACTTGAATGCCGCAGCTCCTTAAAGCTGCCAGATGCTACTAAATCTGGCACTCAACCTAATGCGACCCACCTTTGTAGCAGTGTTTGTGATTAGGTTGCTTCAGTGTTAAAAGATGTTTTCATGTGATGTTAACATTATTTTGTCCAAACcatttaaaattacaaaaagtGATATCTCCTTTGTCAAGGGTATATCATTTTCTATAAAGGTTTCCTCTCTTAGGGGAAAGTAAATAAGTGCAGCTCTTATTGGCTGATTACGTTGGTTATCAGTTGTGTTAGGGATCAGACTAGAGTTAAGATTCTCCCTTTTTATTGACCGGCTGGTACACTTTTGGCCCTCagtattgccattattgttcATCATGTACACATTGCTCATCGCTACTCACAgtcattataaatgaaaagtgtCGACCAAACCCGCCAGGCCTGGATCTATTAATACATGTGATTATTTGTCCTCCATGTACATCATATGATAACAACAGAATGTGGTTCTTTTATTAAGTCAAGCGAAAGTCTGTGTAAATTGGTGTTAAAAAAGTGCTATTGTCCTACTATTTATGATAAAAGAATGCTATATTTGGTGTTGGTACCAGGCAACATGAATGCTGGATAGATATTCTCACATATGTAATATATTGTCATTTACAGCCTTAAAACTGCTGGTAACCACTTTCCCAACACAGATTTAATATTGTGATTCATCAGGCTAAAATATTGTCACATAGCTCATCTGTCCCTCTTTAAATGTTTCTGTAGTAATTCCTGTGTGAAAAGAGATCCAAAAATGCGTAGACTAGTTTGTGTTTTCCAGCTCTGTGCTGAACGCTGCAGTATGCAGTATATTATCTGACCAGCAGGCAGTGCTAGTGGACTGGTTGAATGTGACTTTAAACATTGTTGGGATTGTTATGATGACACTGTAAATACTTAACATGAAAGTAAAGGAtccatggtttatatgtattcaGGGTCATACATATATTTTAGGTTACTTTTCTTTATAACATAACTGGGAAGGCAGAGAGTCggagcagtgttttttttttgttgtctttccTCAGGGACTGCCTGATATGTAGTTCCCACTTTAAGGGAAGTTCATCTgtcttttttctgcatttttcagaataatga
>XM_039794806.1
GTCGGTTAACGCAATCAGGGAGCGTAGTTcctggttgtgtttttttttttgcattctttAGCTTTCAGTCGATCTTACGATTTTACTCCGGCAAACCGGTCGCCATCTGGAGCGTGCTGCCCTGTGTTGGGAGAACAATTCTTGTGCCAACGGTTTACCCCGGAGAGACCATTGGTCTGTGTCTGTCATCAGTTTCCGGCGTGCGTTTGTGGCTCTGGTAACACTGAACAGGAAGACAGACGCAGAGAGACGTCTGCACCGAGAGAGGAAACTGCTGCGGCTTCTTCGTCGGCCTCAGAATGACTGAGTTCTGGGTTTGTTTCAGCTGCTGCATTGCAGAGCAGCCACAACCTAAACGGCGGCGACGGATCGATCGCTCCATGATCGGGGAGCCAACAAACTTTGTTCACACCACACACGTAGGCTCGGGGGACATGGGCCATGGATTGGCATCTGTGGACCTTGTTCAGGCCCAGATGAAATCTAAAGGGGGCTATGTGCATGGAGGATCTGAAGGTTCTCAGTTGTAACAAGCCCTTCACAGTCTTGTGGAAACTACTGTTGTTGATATGaggaagcattttcaaaaagcaGTTCTGTCTGTATCGGACACAGGACCAAAAGATGAAACTACTgcttttccataatgttgtatatatttttttattttccattccttttttttttctttttttttttttaatgaaagcaCTGCTATCCATTTGCTGCCATACTGTTGCACTGTAAAGAGTAACTGTTAAGAATAGATAAGAGGGTTTAGAAAGCTCATAATCTCAGTCAGACGTAtgcttgtgtgtatgcatgaggaaaatattttcaaaaatatttgcGGTTGTAGCCCATTTGGATGCctgtatttattttctgattTGTAAATGGACCTCATGGTGGCTGGGCCACGCTGGAGATTTGGAGCATTCAGTTTCCTTCTTTATTATCAGAGGTTTATCAAAGGACAGGTAGAGGTAGCAAGGCAAAAAGCGATATGTTCATTGTCTTATTCTGAGAAATACTCATGATCCTCTGAGTTGCTTTCAGGGTTGAAGATTGCTGTCTTGTAATAAACTTGAATGAGTAGAGTACACTGGATCATACATTGTACACTCACACTTGCTAGGGAATTTCGCATTGatttcaactgttttttttttgtttttttttatactcatTTAGATTAAACCATATAGAATTTTAATAAACTATAAACTTCCTAATCTGCCTTCTGAAgtcatgtttatttgttttaccgGTGACGTTTGGCAGCTTCACGCTGCAAATACTGAGCGTAGTGGTTCCAAGACTATTcatatttttctatgtcttttcttctttttccaagGCTTGTGTACCAGCAGTAGACCAAGAATTAAACTTGGAAGTAACCAAATCACACTGCAAACAGCGCCACAAATGTGGGTCAGGGTTGATAGAGCCAGCAGTATTCTCAAACCTGTAGTAAATCTACTGTatgaacatttctttttttggtttgttgtaCTGCTGTGCTGCCTTTCCCCTCACACAGTTTGTGTCACACACTGTTCCTTGTCATGACACCTCTTGACATAAAAATAATCTTTCTGTCATTTATTTGGCTGATACACTCACAATCCTGTCAGAAAGGTATCTTGTCCCACCGGAGGTCTTAGTAGTTTTGCGTTTCTTTTGAAAACTTGAATGCCGCAGCTCCTTAAAGCTGCCAGATGCTACTAAATCTGGCACTCAACCTAATGCGACCCACCTTTGTAGCAGTGTTTGTGATTAGGTTGCTTCAGTGTTAAAAGATGTTTTCATGTGATGTTAACATTATTTTGTCCAAACcatttaaaattacaaaaagtGATATCTCCTTTGTCAAGGGTATATCATTTTCTATAAAGGTTTCCTCTCTTAGGGGAAAGTAAATAAGTGCAGCTCTTATTGGCTGATTACGTTGGTTATCAGTTGTGTTAGGGATCAGACTAGAGTTAAGATTCTCCCTTTTTATTGACCGGCTGGTACACTTTTGGCCCTCagtattgccattattgttcATCATGTACACATTGCTCATCGCTACTCACAgtcattataaatgaaaagtgtCGACCAAACCCGCCAGGCCTGGATCTATTAATACATGTGATTATTTGTCCTCCATGTACATCATATGATAACAACAGAATGTGGTTCTTTTATTAAGTCAAGCGAAAGTCTGTGTAAATTGGTGTTAAAAAAGTGCTATTGTCCTACTATTTATGATAAAAGAATGCTATATTTGGTGTTGGTACCAGGCAACATGAATGCTGGATAGATATTCTCACATATGTAATATATTGTCATTTACAGCCTTAAAACTGCTGGTAACCACTTTCCCAACACAGATTTAATATTGTGATTCATCAGGCTAAAATATTGTCACATAGCTCATCTGTCCCTCTTTAAATGTTTCTGTAGTAATTCCTGTGTGAAAAGAGATCCAAAAATGCGTAGACTAGTTTGTGTTTTCCAGCTCTGTGCTGAACGCTGCAGTATGCAGTATATTATCTGACCAGCAGGCAGTGCTAGTGGACTGGTTGAATGTGACTTTAAACATTGTTGGGATTGTTATGATGACACTGTAAATACTTAACATGAAAGTAAAGGAtccatggtttatatgtattcaGGGTCATACATATATTTTAGGTTACTTTTCTTTATAACATAACTGGGAAGGCAGAGAGTCggagcagtgttttttttttgttgtctttccTCAGGGACTGCCTGATATGTAGTTCCCACTTTAAGGGAAGTTCATCTgtcttttttctgcatttttcagaataatgacaaataaatgttaaatgttgatgtttga

Function

symbol description
cdc42se2 Predicted to be involved in regulation of signal transduction. Predicted to act upstream of or within regulation of Rho protein signal transduction and regulation of cell shape. Predicted to be located in cytoplasm; cytoskeleton; and membrane. Predicted to be active in plasma membrane. Orthologous to human CDC42SE2 (CDC42 small effector 2).

NR:

description
PREDICTED: CDC42 small effector protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU41827 False 581 lncRNA 0.51 5 32110802 32117198
TU41828 False 2117 lncRNA 0.37 1 32108600 32110716
XM_039794806.1 True 2863 mRNA 0.40 5 32108572 32117250

Neighbor

gene id symbol gene type direction distance location
ddias NA coding downstream 34296 32067659 ~ 32074276 (-)
LOC120555386 NA coding downstream 45055 32056960 ~ 32063517 (-)
esrrga esrrg,LOC106523689,LOC107086944,LOC106950473,LOC101481777,LOC102790695,LOC107381220,LOC106909738,LOC102196825 coding downstream 325026 31608056 ~ 31783546 (-)
ush2a ush2a coding downstream 513357 31361697 ~ 31595215 (-)
LOC120555710 krtcap3,LOC104966904,LOC108237335 coding downstream 784223 31320866 ~ 31324349 (-)
terfa NA coding upstream 6409 32123659 ~ 32132981 (-)
zdhhc7 zdhhc7,LOC104921777,LOC103362514 coding upstream 19795 32137045 ~ 32151027 (-)
nudt19 NA coding upstream 52594 32169844 ~ 32173548 (-)
gnpnat1 gnpnat1 coding upstream 639607 32756857 ~ 32761106 (-)
LOC120556015 amfr,LOC102783722 coding upstream 646378 32763628 ~ 32773722 (-)
G31445 NA non-coding downstream 13566 32074423 ~ 32095006 (-)
G31435 NA non-coding downstream 52337 32055604 ~ 32056235 (-)
G31426 NA non-coding downstream 67246 32039659 ~ 32041326 (-)
G31402 NA non-coding downstream 202405 31902565 ~ 31906167 (-)
G31397 NA non-coding downstream 474514 31621216 ~ 31634058 (-)
G31493 NA non-coding upstream 45753 32163003 ~ 32164056 (-)
G31494 NA non-coding upstream 47760 32165010 ~ 32166408 (-)
G31496 NA non-coding upstream 51309 32168559 ~ 32169034 (-)
G31507 NA non-coding upstream 102831 32220081 ~ 32234791 (-)
G31508 NA non-coding upstream 132730 32249980 ~ 32250207 (-)
fam120b fam120b,LOC104944276 other downstream 1576430 30515255 ~ 30532142 (-)
LOC120556497 csmd1,LOC102783723 other downstream 2142825 29617320 ~ 29965747 (-)
elp4 elp4,LOC103373817 other downstream 2647336 29402035 ~ 29461236 (-)
prrg4 NA other downstream 2793863 29310550 ~ 29314709 (-)
LOC120555471 hipk3 other downstream 2839389 29217853 ~ 29269183 (-)
G31602 ddx28,LOC106597432 other upstream 774249 32891499 ~ 32894405 (-)
wdr76 frmd5,LOC103354945,LOC103374291 other upstream 1224997 33342247 ~ 33353448 (-)
znf710b LOC104936257,LOC102799163,LOC101477128 other upstream 1319561 33436811 ~ 33471335 (-)
serf2 NA other upstream 1449121 33566371 ~ 33569379 (-)
LOC120555494 arpp19,LOC101481874,LOC103358163 other upstream 1689668 33806918 ~ 33816388 (-)

Expression


Co-expression Network