G32253 (chd9)


Basic Information

Item Value
gene id G32253
gene name chd9
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 36228514 ~ 36244367 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU42848
ATTTTTGTAGACAACAAAGCAACAGTGAAGTCCGACAGGGAAAGTGACAAGCATTCAGATGATCAAagaggttgtaaaaaaaaaaaaaagaaaagccaacAGTTTAGCCAGATTATCTAAACCACCTAATGTGAAAGTAAAACCAAAAGTGGCCACACCAGTAAGGTCAGCAACAATCCCTTATTGTACAGGAAAACAGAGTACAAAAGTAATATATGTTGCCTGCTTCCCAGATCTCAGAAATTACTACTGCATACAAAGTCATCACCAATAGAAACAATGGCCAAACCTATGGAAATAAGATCCATGTTgttataaatttaaataatgctttaaaaaaacatataggTGTCTCCTCATTCACAAATCTAAACTGATCACTAACCATGACTTATTTAACAGTATTTGATTGTTTCTTTGAACAAGACTATTCTCCCAATAACCAAAAACATGGACTTGAAAGCAGGACAGGTGGCCTCTAAAGGAGTGACAATTTTGCAGATGCGGTATGATTCATCTACCCCAGAGGAATTAAATGTGTTTTGCATATTGAACAGTTCTATATTTCTTTTATGCACTTCACATGATGTGTCACATACAAAATCCCGAACCTTCTTCTTTGAGGCTGTTTTTTTGGAATCAGAGACAGCACAGCATTTCAGACACCAGGCAGAGAAGTGAAGCTGAACTGTGCAAAACAAGCACGCCGGATGATGCCATTCATTAATGGGAACATCGGTGCAAACTGAAGAGTGGAGCTGAGAGGAGGTCCCTTAGGATGTGAAGAGAgccagacagagacagagagtgaggtGAGGAAAGAGAAGGCATGAGGTGGAAGGGAATACAGCAAGACCTTTACAACTGCCTCATTATTGAAGGGAGAGCAGGGCCAATGCCTGCACaaaaaggaacacacacagacacacacacacacaccatagtcAACCTGCAGCCTTCAGGATATGATGAAGCAAGGATGTTTTTGTTCCTGGTCTGATTTCTACCTCCTGTTCAGTGTGAGGCAGGTGTCTGTGGCATAAATCTCCATTGGAATGGTAGAGGCCAGGCAGATGGGCTTTCTCCCAccTTTTCTTCCTTGTAGTCAACAGGTGGAGGTTTCCTGTGCTCATGTCCCCTCTCCTGGCTGGAATCGACCCAGGAACAGTTGGATTCATCATGTTGGCTGAGGGCAGCCTCCAGCTGGGGCAGGAGGTCCGGAAGGAGGTCAGGAGGTTCCAGGCCCTCCAAGTCTCCATCCTGAGCCTCTGATGGCAGGAGAGTGTCTCCCAATGCTTGGTATCCATTAGTGTTGATGGCCCTGCAGCTCTGAGGCTGCTCAGAGGGCAGCTGGCTGGACATGCTGGGGTAGCAGTTCATAGACGCGCCAAACATCTCAGAAGACTTGCAGTTTCCCTGGGTTTCTCCAGAGCACCGAAGGGCCCGGAAAGGACATTCCTCCGCCTGGCTAACTGGGGTCCTCATAATTGCTGTGGATGGAAACTGACAGACTGTCCCTGAGAGCTCAGGCACTGTAGAAGTGAGGGGTGCCGTGGTGGCGGTGGGCATAGACAACGACTGCTGACTGAGAGTGGGTATTTCTGGCTCTCCGGGGTAGGCAGGGTACTGAGCAGCTTGGTAAGCAGTGGCAGAACTGACTGAGCATGTGGACAGGGAGTGAACCATAGATGAAGAATGCATGGGGAAGGGCAGGTTAGGGTCTTCCAGTCGTCCCCTCGTCAACTGGTAGCtaccctgctgctgctgtggttgcAGGCAAGTCCCACTCAGAGAAGCACTTTGACTATCCAAATAAGACTTACTTGGCATTGCCCTTGAATGGAACCTTGGTCCTTCTACAGTTAGTTGGTGCTGAACCTGCTGTTGAGTATGGTGAACATGCTGTTGGCGCTGAGATTGACCTCCCTGTTGAAAGGAGAAATTGTGACGTTGCTGTTGCTGCAGGGACATAGTCTGTGTATTAATTTGTTGGTGCTGGTTTATCAGCTGTTGCTGATGACTTTGCTGttgttgcagctgctgctgcattctgtgctgctgctcctgTTGTTGATGACACGGGTGgtgctgttgctgctgtgtttgttgttgtcgGACATGAAGTTGCTGGTTGTGCAGTTGCTGCTGACAaagctgttgttgctgttgagATAATGGATGGTACATATTCCCATTCTGGTCTTGGTTGCCCCACATTGGACTGCTGCTGTTACAGAACAGCCCATTGGATTGAGGTACTTGGCTCATGGCAGCATTATGGTACTGGCCATGTTGGTCTGCAATCAAGTCACCACCTCCACCACCTGTGCCCCCAGGACCAGAAAATGTCTGCCCCATAGGATTATGTGCCTTAATGCCAATGTAGTGACCTATCTGCTGACTGTAAGCAGGTATGGCTTGTTGGGTAGTAACTGGTGGGATCATGTCTTGGTGCTTCCCTGGGTCTAGAGGTTCCACTTGGAGGGGCTCAAAGTCAGCAGTGAGGTTAAGCTCATCCACGAGTGATGGTGCTGAGGGGAAGCAATCCTCGTCCAGCCCTTCCAAACCTCCAACAAAGAGGTTGGGGTCATTAAAGAAGTCCATGGCAGAACCCGGAGGGTAACTGGAACCTTTCGAACTCCACTGGATCCAAGCTGGTCCCAATGAACCTCACTGTGAGCTACAGCATGGC

Function

symbol description
chd9 Predicted to enable several functions, including ATP binding activity; DNA binding activity; and DNA helicase activity. Predicted to be located in nucleus. Is expressed in female organism. Orthologous to human CHD9 (chromodomain helicase DNA binding protein 9).

NR:

description
PREDICTED: chromodomain-helicase-DNA-binding protein 9 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU42848 True 2692 lncRNA 0.48 2 36228514 36244367

Neighbor

gene id symbol gene type direction distance location
fto fto,LOC102782469 coding downstream 82096 36026163 ~ 36146418 (-)
irx5a irx5 coding downstream 453445 35771309 ~ 35775069 (-)
irx6a irx6 coding downstream 611716 35610153 ~ 35616798 (-)
mmp2 mmp2 coding downstream 666420 35545544 ~ 35562094 (-)
lpcat2 lpcat2 coding downstream 683829 35531948 ~ 35544685 (-)
nkd1 nkd1 coding upstream 663533 36907900 ~ 36944842 (-)
adcy7 NA coding upstream 767358 37011725 ~ 37083452 (-)
tent4b papd5 coding upstream 839203 37083570 ~ 37116746 (-)
heatr3 heatr3,LOC103374091 coding upstream 873782 37118149 ~ 37135994 (-)
cnep1r1 cnep1r1,tm188,LOC106587574 coding upstream 891765 37136132 ~ 37141242 (-)
G32246 NA non-coding downstream 6320 36220451 ~ 36222194 (-)
G32242 aktip non-coding downstream 11983 36215010 ~ 36216531 (-)
G32236 NA non-coding downstream 198399 36029855 ~ 36030115 (-)
G32187 NA non-coding downstream 461585 35766728 ~ 35766929 (-)
G32153 NA non-coding downstream 527755 35626531 ~ 35700759 (-)
G32270 NA non-coding upstream 58118 36302485 ~ 36306264 (-)
G32273 NA non-coding upstream 67305 36311672 ~ 36311928 (-)
G32306 NA non-coding upstream 475965 36720332 ~ 36720547 (-)
G32345 NA non-coding upstream 660450 36904817 ~ 36905659 (-)
G32346 NA non-coding upstream 661333 36905700 ~ 36906141 (-)
G31955 NA other downstream 1628973 34490660 ~ 34599541 (-)
LOC120555494 arpp19,LOC101481874,LOC103358163 other downstream 2412126 33806918 ~ 33816388 (-)
serf2 NA other downstream 2659135 33566371 ~ 33569379 (-)
znf710b LOC104936257,LOC102799163,LOC101477128 other downstream 2757179 33436811 ~ 33471335 (-)
wdr76 frmd5,LOC103354945,LOC103374291 other downstream 2875066 33342247 ~ 33353448 (-)
cylda cyld other upstream 615180 36859547 ~ 36882795 (-)
nod2 nod2 other upstream 639284 36883651 ~ 36891304 (-)
ss18l2 ss18l2 other upstream 986774 37231141 ~ 37253426 (-)
LOC120556344 lrrc49,LOC102795887 other upstream 1544358 37788725 ~ 37827271 (-)
slc6a5 slc6a5 other upstream 2960908 39205275 ~ 39235746 (-)

Expression


Co-expression Network