XLOC_005067



Basic Information


Item Value
gene id XLOC_005067
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 2000019 ~ 2001490 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00011057
AGTACCTGATTACTGTTccactctccagaaaaccataaagctgtttattttacttttttgttttgcaatttatttattttttattcatgatTCACACCCTTTCAAAATCACCCTAATCaatgatttctttatttaattgagctattcaagccatctggtgacattatattcatatcgcagtaTATAAAATTTGAAAGATAGTGATGATAATAAGattctgaataaacaaaaaatgctacTATGGTTGTTCAATAATGAGGAGCACAAGCCTGAGGGGAAAAAAGCACTGAATGATGGGCCAAACGTAGAGCAAACCCAAACCATCTGAGACTAAATTAAAACCTGTCCATCTGCATTCATGCATTGTATGCAATCACAGGTAAATGCATTGATAATGATGGTAAATATACACTCTCTGATTGCAAAAAATGTACCTTGTCTGACAGGGCTGGCGAGGAGAAGCACATTGACCCGTAGCAAGGCGCGCAGTCGGCTTCTGCACCGCAAACTCCAGTCCTGCGGCTGGAGAAAACCACAGCGTCTGGCCTGAAGACTGGAAAATCAATAAGCAGCACTAAAAAGCCAGAAGCAGACGACAGCGCCGAGATTCCCAT

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00011057 True 614 lncRNA 0.39 2 2000019 2001490

Neighbor


gene id symbol gene type direction distance location
XLOC_005066 sox9a coding downstream 48735 1947593 ~ 1951284 (-)
XLOC_005065 CABZ01081830.2 coding downstream 305966 1693014 ~ 1694053 (-)
XLOC_005064 sstr2a coding downstream 442733 1556147 ~ 1557286 (-)
XLOC_005063 CU694266.1 coding downstream 509431 1490472 ~ 1490588 (-)
XLOC_005062 NA coding downstream 546680 1452900 ~ 1453339 (-)
XLOC_005069 NA coding upstream 66473 2067963 ~ 2479931 (-)
XLOC_005070 mapk8b coding upstream 504029 2505519 ~ 2522487 (-)
XLOC_005071 CU929359.1 coding upstream 577747 2579237 ~ 2617510 (-)
XLOC_005072 NA coding upstream 624179 2625669 ~ 2669500 (-)
XLOC_005073 NA coding upstream 701865 2703355 ~ 2744641 (-)
XLOC_005057 NA non-coding downstream 914792 1072485 ~ 1085227 (-)
XLOC_005043 NA non-coding downstream 1591388 406187 ~ 408631 (-)
XLOC_005042 NA non-coding downstream 1644464 337808 ~ 355555 (-)
XLOC_005083 NA non-coding upstream 1280266 3281756 ~ 3284909 (-)

Expression



Co-expression Network