G33168


Basic Information

Item Value
gene id G33168
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 40920334 ~ 40925054 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU44033
tcctgttttttttattttgtcaaacatttttattgaaGCATTCATTTTACATGTAAGAAATACTCAAAACATTTCAAAGAGTCAACGTGAGCCAGACTACTGAAAACGAGACATGGGTCAAAATGCTATTCTTTTAGTTATTTTTCCGTCACGGTTAGATTTGTGCTTTTCAGAAATACACAACTGCTTATTTTGGAAGAATTTTCAACCACATTTTGACTCATGTCTTCTCGACATAGTTTCTAATACACGATGATGAATCTTCCATCAGtattatcagaaaaaaaaagcacagaccAGAAACATCCAACATATTGTCAATTACTGTACAGTGAATTCACTTGATAAAAATACACAGTTAACAGGCGTCTTCGACGGGGCCCGTGAATCTGCTCAGCAGTCACGAGAAAgtatcttttacattttttgattttttcaGTTACATGCATGCATCACACAAGAGCTTCAGATGGGTTATGCTCAAGTCACTTCACACACCACGAGTTCTGATCATGACTTGGAACTGGGTCAGGTCTGCCTTTTAAAGTAAAACTGAAGCAATCATAGGTCCACCTCTGCACACTGAACTCTCACTGAGGCTGAAATAGAGAAACCACCACGGGTCAGACTGTGACAGAATACATTATTATCTGAAATGAGGCAAACTCACAGTATAATTTCTTACTGTGAAAAAGAAATTGGCATATCATCGTCCAAAATTGTCACTTTCTTAGAAGTCAGTGCAGCCATACAGGACCGGAAATTGTCGATTAGTAACGGTGTAGAGTGAAGCGAGGCCTGGGGAGAGTGTGAAGTCTTATTAGTTTTCAGAGGAGGTGTGAAGCCACTTTCCCCAGTGCAAAAGAGATGTGACTCGGTGAACAGTTTTATGACATGGAAGAAAATTCAGATTTTTACCACTCTGACTGCACATTGTGGTCACACCTTCAGATTTATCTTGATAAAGACGGAGCGCATCGCGTTGTACTCTCAAAGCCACGTCCACCGGAGGGGGAAAACAATCAATGCCACAAAATGCAGCTAATGGAAACGCTAACAAAGTGCCTGTAGCTAGCAAAAAACATTAGATTTAAGCATGTCGCAGGATTATTTTAGCAACCTTTGTCTACCAGAGAGGACAAGTTAGCTGttagtaagctaatgttagctatgtgttagcaaaTTAAGGCAAACATAATGCTGCATAGCTTTCTGATTTATCCACATTCCACTGTAACACGAGTCGCACACTGTCAAAATGTTTTAGCTTAACATACATAACtatagttagcctaaaactgacatttggatatcTGACTTGGTAACAAAATGCTTGCTTCATAGTAACGCTGgccgtaacgttagcttagtgtcTTCCCATTCTCCCTGCCGATTCCTCACGTCACTTTTGTCTTTATAAAAACTCAGTTTTTCGGTTCGGCAGCTTAAGTTTTGGGTTCTTTACCCTGTTGGTAGTGCatatcaccacacagcagcttttaagcatttttctgttgtttgctagcagacggCGATGACGAGGAGGCACCGTCACGTaatacaagtcaatggagagcggAGAGTTGATTTCCCCTCcggtgggggcgggacttaaatgcgctctgtctctatggtgtttttatttgaGATATTTCATAGTAAATATAGCAATATACCTTCATTTTAATGTTGCGCTTTGTTGAAGTGCACTGGTCTGAATGCTTGTCTGCTAAatactccactatgttcaccagccaGTCTCTAGCTATGTCTGTCATTTGGTGATTTGGTCATTGTTTTGACTGGAAAGTTGATGCGGTGAGACTTTGGTCTATTGTTGACAGAAAAATATTAATAAGTGTATCTTTTAAATGTCGTTTTTCAATGCCTTGAGCACCGAACACAATactctttttactttttattgtattgagtTGGCAGCAGAAATCGATTTAAATTCACGAAACTGCAGTTAGTGCTCTCCCTTGCTGAGTTAAaacttcttttttatatattcttttGAAACTTAAATTTTCATTAGGTAAAATGGTCTGGTGTGTTCAGACCATAGTTTATAAGACAACTTCTCAGAAATTCCCCTCCACTTAActgttattaaaaacaaaaaaaagtaaacgtTCAATCACAGCAAAGTATCACTCCACATGGTGCCTCTCCAACAGAGAAGGAGATTTCATAAAGTCAAGGTTCATTACAGTTTGAACAGCATCATCTTTCCCCCGGCAGCGTGAAATTCAACAGACATGCATATTACAGTGGCCTGGGAGAAGCTGTTCAATTTTCCCCACAGTGGTCGCCATCTGAAGAAATGAATTAAACTGCTGCTAGAATTAGAAATCAAATTATGGTCCAGATCCCCGCAGGCCCAGAGGTAGCATGTGGTCAACAGTTGGTACGGGATGGATATGCAGTCTTTTCCTAAACTGTTTCGTCCTGTTGCCCTCTGCTACCGCTGTGGCTGAGTATCTGAGCGAGAAAcactccaaaataaaaaaagagagactcattttgacacaaaacgCACTGTTCATACCAGTTTAACATGCCTCTAAAGACATAAAGAAAGTAAAGTGACTTTTTACATACGAGCAGAAACATTCAGTCTTTGACGAGGATAAGGAATATTTCACTTCAGAATAAAAACTGTGACCTCCTCTCCTTCATGTACAGCATGTAGGATGAGCATACCCCTCTGCTGCTAATTCAATTATAGTTTAAAAAGAGCATACAATGTCCATCAAATTAATTTAATCACCATATTCTTTGAGCCTGATAATCGGACTAAATTGCCatttatggcgtttttccattacatggtacctgctcggctcggctcggctcgaccgcggtgccccgtcctcctttttccattgcagatttttagtaccgcctcatgtgTGAGGCGAGCgcggctggtcgtcatagcgccGCCAGAGGAAACTgtcgtgacctaacgcgacacacgaAGGTGTGTcgctgttgccacagccagaagacccattttgtttcaaaagaagctggaggcagcaaaaaaacaccgctggctaaactgtTTAAAAAAGGTGGGTTTGCTCACTACACCCTcttctgtcgctagcaatgatgacgcagtgattagtgacgattctctcccaccaatcagtagtctgcaggttttcacatcACCTTCTGCTAttgcctcagctcgcttggaacctcgacggaggtgatcctaaaaaaagtacctgttggcaggtaccagggacttttttttttcataatggaaaaccaaaaaaggcgagtagaggcgaggcgagtcgagcaggtaccatgtaatggaaaaaatgGTTTAAATAGTAAATTTAATTAGTTTTCATCTTAAGGGAGATGCTGGAGCTAACTTTCTTCCTCCAGAGAATGTGTCAACTTTTGAACCCACttttaatcatttaaatattaaaaatagtTAAATCACAAAGTACTAAGAGTGGACACAGGATAGTTCTGCTATGAATTTCAATGACATGGAAGTACGATACTTCTAACTTAAACGAGAGTTCGGATGGTAATGACTTGAGTTTCCATTATAGAGTGAAATTTTCAATTAGAGTTCACATTGCCATTCAAGGTTCCATTAGCTGGAAATTGAAGATATTTTCATTTAAGCTCTACGCTCAGTCCAAGGTCCCTGTGACTTTTGCGAAAGGAATTCATATGACGAGGAAGCGTCATAGACGACCACAAGTATTCTCCACTCTGCACACAACCCACAAACCTTTTGTGAACGGAGACTTGATCCACTCATGCATGAATTCCTCTCACAACGTTCAGTCCCTAGCTCATGTGCTGCAGCTAGGGTTTCTTCTCTGcatgtgattggctgctgctgctgctgctgctgctgctgctgctgctgctggtggtggtggtggtggtgttggggAAGTCCTGATAAACCAGGAAGCCAGTGAAGGTGATGTACTTGGCGTGGTTGCTGTAGGCCCCGAAACCATCTCTCTGGTGGGAGTAGAGCCAGACGGTGTCGCCGGTTTTTAGCGACAGCATTAAGCTCTGACTCTGCAGAGCTTTCTCGCCCTGGCTGTCGTCGTAGATCATTGCCTGCACCTCCAGGTGGTTCTTCATCAGCTTGACGGACAGCGTCTTCTGCGGCAGCTTGCCCACGTTGAAGGAGAAGTAGTAGGCGCCGGGAACGCGGCAGGTGAACACCCCCTCTGTCACGTTAAAGTCCTCTCCGATGTTGACGAACGCTGTGTCGAAGCCGACCGGCTGGTGCTGCGGCATGCCCACTTGGTTGACCCCCACGATGCTCTGGGTGCGCCCCACCGAGAAGGCAGATCTCTGGTCGTCCTCTTCGtcgtcctcatcctcctcttcctccctatGTTGCAATTCCTTCCCCTCTTCCGCCGCCACCGCCGCCACCACCACCGTGTCTCTCGTCCCAGACCTGACGTGCTCTGTGTCCTGGTTGCTATTCAACTGTGGGCTGTTGTCTTGCCGGGGCTGCTGGGAGTTGGAGGCAGGATGATGTCGGTGGTGGTGTGTCTGGAAGCCGTAGGTGTCGGGGTAGACGAGGTAGCCGTTGAAGGTGGTGTAGTGTCCGGTGTTGCTGTAGAGCGCGTAGCGAGGGTCACCATGGAGACGGAGCCAGACGGTATCACCGAACTCCAGCTGCAGCATGACACTCTGGCTCTGCACCT

Function

GO:

id name namespace
GO:0021591 ventricular system development biological_process
GO:0021592 fourth ventricle development biological_process
GO:0007417 central nervous system development biological_process
GO:0007420 brain development biological_process
GO:0030902 hindbrain development biological_process
GO:0060322 head development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU44033 True 4721 lncRNA 0.44 1 40920334 40925054

Neighbor

gene id symbol gene type direction distance location
LOC120556279 atp6v0d1,LOC103462946,LOC107563463 coding downstream 237977 40672915 ~ 40682357 (-)
foxr1 NA coding downstream 248732 40666272 ~ 40671602 (-)
LOC120556133 NA coding downstream 267583 40648347 ~ 40652751 (-)
LOC120556376 NA coding downstream 289209 40598769 ~ 40631125 (-)
LOC120556512 glg1,LOC100701703,LOC101472041,LOC108242135 coding downstream 504271 40386097 ~ 40416063 (-)
ndufs3 ndufs3 coding upstream 4416 40929470 ~ 40934556 (-)
ptpmt1 ptpmt1,LOC102795413 coding upstream 12761 40937815 ~ 40948565 (-)
prc1b prc1,LOC102796011 coding upstream 27861 40952915 ~ 40973681 (-)
vps33b vps33b coding upstream 49736 40974790 ~ 40998777 (-)
hypk hypk coding upstream 90415 41015469 ~ 41018907 (-)
G33167 c1qtnf4,LOC102794664 non-coding downstream 1750 40918227 ~ 40918584 (-)
G33109 NA non-coding downstream 356403 40562192 ~ 40563931 (-)
G33061 NA non-coding downstream 525631 40281473 ~ 40394703 (-)
G33068 NA non-coding downstream 585387 40331750 ~ 40334947 (-)
G33048 NA non-coding downstream 711559 40207391 ~ 40208775 (-)
G33196 NA non-coding upstream 11787 40936841 ~ 40937064 (-)
G33347 NA non-coding upstream 520475 41445529 ~ 41445742 (-)
G33368 NA non-coding upstream 635778 41560832 ~ 41565475 (-)
G33369 NA non-coding upstream 641161 41566215 ~ 41566420 (-)
G33371 znf408,LOC104941494 non-coding upstream 645948 41571002 ~ 41571236 (-)
LOC120556513 NA other downstream 256677 40661364 ~ 40663657 (-)
G33122 NA other downstream 257713 40648676 ~ 40662621 (-)
LOC120556146 NA other downstream 330670 40564241 ~ 40589664 (-)
LOC120556511 LOC102208128,LOC101468289 other downstream 778286 40049624 ~ 40142048 (-)
slc6a5 slc6a5 other downstream 1684588 39205275 ~ 39235746 (-)
sirt3 sirt3 other upstream 832573 41757627 ~ 41764896 (-)
G33711 NA other upstream 1474237 42399291 ~ 42402136 (-)
G33796 NA other upstream 2060169 42985223 ~ 42990770 (-)
G33847 NA other upstream 2289580 43214634 ~ 43214987 (-)
G33914 NA other upstream 2527658 43452712 ~ 43456847 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G524555 c1qtnf4 non-coding NC_048570.1 CM023224.2 56960763 ~ 56972189 (+)
bowfin (Amia calva) AMCG00007162 NA coding CM030123.1 CM030123.1 5692142 ~ 5693305 (-)