sirt3 (sirt3)


Basic Information

Item Value
gene id sirt3
gene name sirt3
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 41757627 ~ 41764896 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU44387
GCTGGCTTTTTTTGTACCTTTTGTTGTACAAATCCTCCAAAGTGTGCCACTCCGTCGCCATCTCCGGCGTGGAGCTGGTGCTCTGCTGCTGTTTGAGGAACCCGGTAACATCTCTCATTGTGGCAACAAAACTGTGAAGTTAAATGTGTATTCGGGGGCTGATGAGTGTTGCTGAATCTTCAGCTAACGTCAAGTAGCCTGCCGTGTTGTGAGTCTGCTGCTGGGCGCAAAGGATGATGGGAAAGCGAGGAGGCGTTTCTATGGTTTTTACGgtTTGGGTCAAAGGAGTTTGTGTTCAGGTAAAGCTGCAGCCGCAGCTCTGTGCagacAAACAAACTCTCCCCGGTGGAATGGCACTCAGGGGTTTTTCTCCCGTGGCGGTGGCGGCGGTGCAGCCGAGGAGCAGCAGACCCTGGAGGACATCGCcaagagcatcagagagcagcggtACAAGAGGGTGGTGGTGATGGCCGGAGCTGGGATCAGCACGCCTAGTGGCATCCCAGATTTCAGGTCTCCAGGCAGCGGCCTCTACGACAACCTGCAGCAGTACGACCTGCCGTACGCCGAGGCGATATTCGAGATCAGCTTTTTCCATCAAAACCCAAATCCCTTCTTCGCCCTGGCCAAAGAGCTGTATCCAGGGAATTACCAGCCCAACCTGACGCACTATTTTGTACGGCTGCTTCACGAGAAGCGTCAGCTCCTCAGGATGTACACGCAGAACATCGACGGCCTTGAAAGACTGGCAGGGATTCCTCCTGAGATGTTGGTGGAGGCTCACGGTACATTTACCACCGCCACCTGCACAGTCTGCCTGAGGAAATACGAGGGAGAGGAGCTACGATCCGATGTGATGGCAGGTGTGGTCCCAAAGTGTCCCACCTGTAAAGGCGTGGTAAAGCCTGACATTGTGTTTTTCGGGGAGGAGCTTCCACGTCACTTCTTCAAGTACCTCACCGACTTCCCTCTGGCTGATCTCCTCATCGTCATGGGAACTTCACTGGAGGTGGAGCCCTTCGCCAGTCTGGCGGGAGCTGTGCACAGCTCTGTTCCCCGTCTGCTCATCAACAGGGACTTGGTGGGTCCGTTCGCCTGGCGCCGCCGTCGTCACGACGCCGTGCAGCTGGGCGACGTGGTCGGTGGCGTGCGAGCCCTGGTGGATGCCCTCGGCTGGACTCGGGAGCTGGACGCTCTGATGGCGGCCGGCGCTGAGA
>XM_039796159.1
GTGTTGTGAGTCTGCTGCTGGGCGCAAAGGATGATGGGAAAGCGAGGAGGCGTTTCTATGGTTTTTACGgtTTGGGTCAAAGGAGTTTGTGTTCAGGTAAAGCTGCAGCCGCAGCTCTGTGCagacAAACAAACTCTCCCCGGTGGAATGGCACTCAGGGGTTTTTCTCCCGTGGCGGTGGCGGCGGTGCAGCCGAGGAGCAGCAGACCCTGGAGGACATCGCcaagagcatcagagagcagcggtACAAGAGGGTGGTGGTGATGGCCGGAGCTGGGATCAGCACGCCTAGTGGCATCCCAGATTTCAGGTCTCCAGGCAGCGGCCTCTACGACAACCTGCAGCAGTACGACCTGCCGTACGCCGAGGCGATATTCGAGATCAGCTTTTTCCATCAAAACCCAAATCCCTTCTTCGCCCTGGCCAAAGAGCTGTATCCAGGGAATTACCAGCCCAACCTGACGCACTATTTTGTACGGCTGCTTCACGAGAAGCGTCAGCTCCTCAGGATGTACACGCAGAACATCGACGGCCTTGAAAGACTGGCAGGGATTCCTCCTGAGATGTTGGTGGAGGCTCACGGTACATTTACCACCGCCACCTGCACAGTCTGCCTGAGGAAATACGAGGGAGAGGAGCTACGATCCGATGTGATGGCAGGTGTGGTCCCAAAGTGTCCCACCTGTAAAGGCGTGGTAAAGCCTGACATTGTGTTTTTCGGGGAGGAGCTTCCACGTCACTTCTTCAAGTACCTCACCGACTTCCCTCTGGCTGATCTCCTCATCGTCATGGGAACTTCACTGGAGGTGGAGCCCTTCGCCAGTCTGGCGGGAGCTGTGCACAGCTCTGTTCCCCGTCTGCTCATCAACAGGGACTTGGTGGGTCCGTTCGCCTGGCGCCGCCGTCGTCACGACGCCGTGCAGCTGGGCGACGTGGTCGGTGGCGTGCGAGCCCTGGTGGATGCCCTCGGCTGGACTCGGGAGCTGGACGCTCTGATGGCGGCCGGCGCTGAGAAAGTGAGTGTGGGTTACAGGCTCCCGTGTATAATCATTCTTCTACGTCCGAGTTCCCATGAGCCTTTTGGGCAGTTACATTTCCTCTGGCGCTGTATTCGGGTCCATGCATGTATCGCAAGCCAGCGAAGTAAGGTTGAAGCCGCTGAAACAAACATGAGCTGA

Function

symbol description
sirt3 Predicted to enable NAD+ binding activity and NAD-dependent histone deacetylase activity. Predicted to be active in nucleus. Is expressed in liver and retina. Orthologous to human SIRT3 (sirtuin 3).

NR:

description
PREDICTED: NAD-dependent protein deacetylase sirtuin-3, mitochondrial

GO:

id name namespace
GO:0006476 protein deacetylation biological_process
GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0070403 NAD+ binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU44387 True 1217 TUCP 0.57 7 41757791 41764896
XM_039796159.1 False 1178 mRNA 0.57 7 41757627 41764693

Neighbor

gene id symbol gene type direction distance location
cdhr5a LOC104966020,LOC102208740,LOC102306030,LOC102082062,LOC107382057,LOC103155221 coding downstream 55952 41680273 ~ 41701675 (-)
ppip5k1a ppip5k1 coding downstream 257220 41453032 ~ 41500407 (-)
tp53bp1 tp53bp1,LOC104941490 coding downstream 364812 41361515 ~ 41392815 (-)
LOC120555591 cdkn2aip,LOC102799175,LOC108249214 coding downstream 412432 41342668 ~ 41345195 (-)
iqgap1 iqgap1 coding downstream 484268 41199741 ~ 41273359 (-)
LOC120555595 kiaa0895l,LOC105940675,LOC102205198 coding upstream 81363 41846259 ~ 41865163 (-)
LOC120556217 NA coding upstream 139873 41904769 ~ 41910826 (-)
LOC120556548 LOC104961102,LOC105919414,LOC102215897 coding upstream 235333 42000229 ~ 42017731 (-)
pole3 pole3 coding upstream 278293 42043189 ~ 42050360 (-)
herc1 herc1 coding upstream 500597 42265493 ~ 42341342 (-)
G33383 LOC103462981,LOC106924557,LOC102221671,LOC103155220 non-coding downstream 84765 41670400 ~ 41672862 (-)
G33371 znf408,LOC104941494 non-coding downstream 186391 41571002 ~ 41571236 (-)
G33369 NA non-coding downstream 191207 41566215 ~ 41566420 (-)
G33368 NA non-coding downstream 192152 41560832 ~ 41565475 (-)
G33347 NA non-coding downstream 311885 41445529 ~ 41445742 (-)
G33432 NA non-coding upstream 2270 41767166 ~ 41791971 (-)
G33454 NA non-coding upstream 75427 41840323 ~ 41848807 (-)
G33455 NA non-coding upstream 79186 41844082 ~ 41863265 (-)
G33457 NA non-coding upstream 83172 41848068 ~ 41848640 (-)
G33531 NA non-coding upstream 187450 41952346 ~ 41993964 (-)
LOC120556513 NA other downstream 1093970 40661364 ~ 40663657 (-)
G33122 NA other downstream 1095006 40648676 ~ 40662621 (-)
LOC120556146 NA other downstream 1167963 40564241 ~ 40589664 (-)
LOC120556511 LOC102208128,LOC101468289 other downstream 1615579 40049624 ~ 40142048 (-)
slc6a5 slc6a5 other downstream 2521881 39205275 ~ 39235746 (-)
G33711 NA other upstream 634395 42399291 ~ 42402136 (-)
G33796 NA other upstream 1220327 42985223 ~ 42990770 (-)
G33847 NA other upstream 1449738 43214634 ~ 43214987 (-)
G33914 NA other upstream 1687816 43452712 ~ 43456847 (-)
LOC120556522 LOC103374105,LOC102297981 other upstream 2001795 43766691 ~ 43813225 (-)

Expression


Co-expression Network