XLOC_005068


Basic Information

Item Value
gene id XLOC_005068
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 2000636 ~ 2001824 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011058
GCCGATCTCATGCAGCACGGTTCCCCACAGTATCGAACATCGATATCGTATCTTAGtagtaattagggctgcacaatatattgtttcaccatcaatatcgcaatgtgtgtctgcaatagtcacatcacacgatattaaaatgtttcattgagattatagttgatcagcacaacAGTTACAGTGCAATGTGGAGCAAAGTATGCCCAGAAACAGAGAGAAACgttatcatttgcatgtttaaaagacattttcaagagagtttaaagcattcaggtgCCAAAAAAAAGCTTATTTGTAGCTTCAATAgtgaattattttacatttcattactCAATTTCAGTACCTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011058 True 346 lncRNA 0.36 2 2000636 2001824

Neighbor

gene id symbol gene type direction distance location
XLOC_005066 sox9a coding downstream 49352 1947593 ~ 1951284 (-)
XLOC_005065 CABZ01081830.2 coding downstream 306583 1693014 ~ 1694053 (-)
XLOC_005064 sstr2a coding downstream 443350 1556147 ~ 1557286 (-)
XLOC_005063 CU694266.1 coding downstream 510048 1490472 ~ 1490588 (-)
XLOC_005062 NA coding downstream 547297 1452900 ~ 1453339 (-)
XLOC_005069 NA coding upstream 66139 2067963 ~ 2479931 (-)
XLOC_005070 mapk8b coding upstream 503695 2505519 ~ 2522487 (-)
XLOC_005071 CU929359.1 coding upstream 577413 2579237 ~ 2617510 (-)
XLOC_005072 NA coding upstream 623845 2625669 ~ 2669500 (-)
XLOC_005073 NA coding upstream 701531 2703355 ~ 2744641 (-)
XLOC_005057 NA non-coding downstream 915409 1072485 ~ 1085227 (-)
XLOC_005043 NA non-coding downstream 1592005 406187 ~ 408631 (-)
XLOC_005042 NA non-coding downstream 1645081 337808 ~ 355555 (-)
XLOC_005083 NA non-coding upstream 1279932 3281756 ~ 3284909 (-)

Expression


Co-expression Network