XLOC_005069


Basic Information

Item Value
gene id XLOC_005069
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 2067963 ~ 2479931 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011059
CAGCGATCATAAACACTACAGTGCCTGCATCTGATGAGGAATCAGTAGAAGAACTAGGAACAAACCCTTCATCACAAGCACTGCAGGAGTTGGCTATTTTACAGatTAACGGATGAAGGTGTTGAGTAGCTCCGAATGGAAAATGATGTGGAGAATGAGCGGACGGATGAGCGGATTGTTTTAGTTTTCTGTCGTCCTGTGAGGCCGCGaGGAATTCAGAACTGCGGAGGACAGATTCTCCGCTGAGCTCATGCTGTATAAAGCGAAAGTGAAGGATgcgtgtatatacagttgaagtcaaaattattcgccctcctgtgaatttgttttattttttcaaatattttttaaacgatgttgaacagattctggaaattttcacagtatttcctataatattttttcttctggagaaagtcttatttgttttatttcggctagaataaaagcagttcttaatttttttaaaagccattttaaggtcaatattattagcccccttaagctatatt
>TCONS_00010789
CAGCGATCATAAACACTACAGTGCCTGCATCTGATGAGGAATCAGTAGAAGAACTAGGAACAAACCCTTCATCACAAGCACTGCAGGAGTTGGCTATTTTACAGatTAACGGATGAAGGTGTTGAGTAGCTCCGAATGGAAAATGATGTGGAGAATGAGCGGACGGATGAGCGGATTGTTTTAGTTTTCTGTCGTCCTGTGAGGCCGCGGTGAGTCAGATACCACATCCTTCAGCTGTGCTTCTTTTTTTCCCTCGTAAAACGAAAACACAGTTAAACATCCCCCCTGTTtattccacacatctgatttcaCAAGTTTTCcctttgtgtgtttgtctgaagaGGAATTCAGAACTGCGGAGGACAGATTCTCCGCTGAGCTCATGCTGTATAAAGCGAAAGTGAAGGATgcgtgtatatacagttgaagtcaaaattattcgccctcctgtgaatttgttttattttttcaaatattttttaaacgatgttgaac
>TCONS_00010791
AACTAAATGGTCTCCACCTGTGTTTGAGCAGGCCTACCTTTCTCACGGTGAATCCCATGAAAGCAGAACACCAAAATGAGTTGTAATCGCGAATATAAACTGATCAAGAAACTCCTCAAGAGCAAAGCAAGAAAGTTTTTCCTCATTGTTAATTTAACATGAGTTATTTTGATAGTTGTTGTTAGTGAAAGGCATGCAATCAAGAAACTTGCCAATGGAAACTTTCAAAATGGCGGACGTCCACACCTGCAAACTAGTCTGAACTTCAACAGCAGATCGAGAAGGACAattgtaccaaaaagctgaggaccgcGGGCGGGATGAAATTACGAGAGTTTCTGGGAGAAACAACAAAATGGGAGGATTGCAGGAGATGGGTCTAAAATACAGGAGACTgttgggaaaaacgggagtgttgcaGGCTTCGGAAATCCCCACAAAGCATCAAAAGAGTCAGCAGTACATGCCCTGATACAAGTTTTCTTCAATCTCCCTCAGAGAAAGCGTGGCTCTCAAAGCTCTCGGATTATTCAACGTTCGCCAGCAGGACATCCCATGCAGAGCGATCATAAACACTACAGTGCCTGCATCTGATGAGGAATCAGTAGAAGAACTAGGAACAAACCCTTCATCACAAGCACTGCAGGAGTTGGCTATTTTACAGGTAAGGTTTTATTTCCTCTGTGGTTCATTTTGAGATCGTATGGGATGGAAATAGTTGTATGC
>TCONS_00010790
AACTAAATGGTCTCCACCTGTGTTTGAGCAGGCCTACCTTTCTCACGGTGAATCCCATGAAAGCAGAACACCAAAATGAGTTGTAATCGCGAATATAAACTGATCAAGAAACTCCTCAAGAGCAAAGCAAGAAAGTTTTTCCTCATTGTTAATTTAACATGAGTTATTTTGATAGTTGTTGTTAGTGAAAGGCATGCAATCAAGAAACTTGCCAATGGAAACTTTCAAAATGGCGGACGTCCACACCTGCAAACTAGTCTGAACTTCAACAGCAGATCGAGAAGGACATTGTTGTTAGTGAAAGGCATGCAATCAAGAAACTTGCCAATGGAAACTTTCAAAATGGCGGACGTCCACACCTGCAAACTAGTCTGAACTTCAACAGCAGATCGAGAAGGACAattgtaccaaaaagctgaggaccgcGGGCGGGATGAAATTACGAGAGTTTCTGGGAGAAACAACAAAATGGGAGGATTGCAGGAGATGGGTCTAAAATACAGGAGACTgttgggaaaaacgggagtgttgcaGGCTTCGGAAATCCCCACAAAGCATCAAAAGAGTCAGCAGTACATGCCCTGATACAAGTTTTCTTCAATCTCCCTCAGAGAAAGCGTGGCTCTCAAAGCTCTCGGATTATTCAACGTTCGCCAGCAGGACATCCCATGCAGAGCGATCATAAACACTACAGTGCCTGCATCTGATGAGGAATCAGTAGAAGAACTAGGAACAAACCCTTCATCACAAGCACTGCAGGAGTTGGCTATTTTACAGGTAAGGTTTTATTTCCTCTGTGGTTCATTTTGAGATCGTATGGGATGGAAATAGTTGTATGC
>TCONS_00011060
ttgtttGCAGTATATCAATGCTTGACACTCCAGTCTGGTAGGTGGCGGTAGTGCACCATTAGCGGAGTTGCCAGCCATAAAAACACTAGAAGAAGAAACTAAATGGTCTCCACCTGTGTTTGAGCAGGCCTACCTTTCTCACGGTGAATCCCATGAAAGCAGAACACCAAAATGAGTTGTAATCGCGAATATAAACTGATCAAGAAACTCCTCAAGAGCAAAGCAAGAAAGTTTTTCCTCATTGTTAATTTAACATGAGTTATTTTGATAGTTGTTGTTAGTGAAAGGCATGCAATCAAGAAACTTGCCAATGGAAACTTTCAAAATGGCGGACGTCCACACCTGCAAACTAGTCTGAACTTCAACAGCAGATCGAGAAGGACAattgtaccaaaaagctgaggaccgcGGGCGGGATGAAATTACGAGAGTTTCTGGGAGAAACAACAAAATGGGAGGATTGCAGGAGATGGGTCTAAAATACAGGAGACTgttgggaaaaacgggagtgttgcaGGCTTCGGAAATCCCCACAAAGCATCAAAAGAGTCAGCAGTACATGCCCTGATACAAGTTTTCTTCAATCTCCCTCAGAGAAAGCGTGGCTCTCAAAGCTCTCGGATTATTCAACGTTCGCCAGCAGGACATCCCATGCAGAGATATTGCCCCTCTGCACCGATCTCCGACTCAAATCCTGACTTTAACGCAAGCAGTGAGCGAGAAACCTCAGCGCTGGACTCAGATCAGTGTTAatccacacacaaaaaacatctaCTCCCACACAAACAGCGATGAGCAAAAGCCTGTTGCATAAATGGCCGTGTGGCTCAAATCCCAGCATGCACCAAGTCCAGAAGTATTCAAACATCCAAACAGGAGATTTGAGCGTAATGAGTCTGAATCAGCCTAGAAGCcacgaaaacaaacaaaacctacgtaaacacaaataaaccagGCCTGAATTATGTCATGCATAATGGAGCAGTCTGGCAGTTACTGGAGAATATGGCAGACATTCTGCGACATGCAAaaacgagaaagagagagagagatagagaaagaTTGCATCCTTCTAGTGGCACAATACATTAAAGCCTGTTACAAAACGAGAGGAGACCAATAAAAGCACTAGTGATACGCTTGC
>TCONS_00011061
GCTTCCTGTTGTCTGACTGACCTGCTTTACTCCAAACGAACGTAAAGGAAATAGTCACAATTACGATGGCCACTAGATTGTTTAAAAGTAAAGACAATAAACAAGTAGCCTAGTCATTTTCACGAATATCTTCTGTTTTCCTCGACCTCCTGTTGGAGCAACTATTGCATGCAGATTTTCTCAGTACTTTGGTTGAAAAGACTTGGAAATGTTCCCGCCAATATCAACACCACGTGCAGTGTGGAGTCAAACAGAGTCTCAGCAACGACTGACTACAAGCCGATCATTACAGGCCGTCTCTGATAAGGATCTTCCATGTGAATAATGCACAAAGCCTCCGGTGTTCTGGACATGTGGGTCCGGAGACTTGAGTTTTCAGCACCTGATGATGAACGCAGACCCCCGAGGCTCCTCTTTACCGAACACTGACAGAGGAAAAGCTCTCTGTTAACCCAAGTCTCACCTGATACTTCCTTGTTACCGCGAACACACATATACAGATGTGCTGAGTGACAGATGCGGCTCACTGTAATCAAACAGCAGCAGGCGCACGCTGACAGACGCACACTGGGAACCTGCTGCTGCCGCATACACACTGGGCGattgtaccaaaaagctgaggaccgcGGGCGGGATGAAATTACGAGAGTTTCTGGGAGAAACAACAAAATGGGAGGATTGCAGGAGATGGGTCTAAAATACAGGAGACTgttgggaaaaacgggagtgttgcaGGCTTCGGAAATCCCCACAAAGCATCAAAAGAGTCAGCAGTACATGCCCTGATACAAGTTTTCTTCAATCTCCCTCAGAGAAAGCGTGGCTCTCAAAGCTCTCGGATTATTCAACGTTCGCCAGCAGGACATCC
>TCONS_00011062
ttgtttGCAGTATATCAATGCTTGACACTCCAGTCTGGTAGGTGGCGGTAGTGCACCATTAGCGGAGTTGCCAGCCATAAAAACACTAGAAGAAGAAACTAAATGGTCTCCACCTGTGTTTGAGCAGGCCTACCTTTCTCACGGTGAATCCCATGAAAGCAGAACACCAAAATGAGTTGTAATCGCGAATATAAACTGATCAAGAAACTCCTCAAGAGCAAAGCAAGAAAGTTTTTCCTCATTGTTAATTTAACATGAGTTATTTTGATAGTTGTTGTTAGTGAAAGGCATGCAATCAAGAAACTTGCCAATGGAAACTTTCAAAATGGCGGACGTCCACACCTGCAAACTAGTCTGAACTTCAACAGCAGATCGAGAAGGACATTGTTGTTAGTGAAAGGCATGCAATCAAGAAACTTGCCAATGGAAACTTTCAAAATGGCGGACGTCCACACCTGCAAACTAGTCTGAACTTCAACAGCAGATCGAGAAGGACAAACAATAAAATGTCAAGCGGCGAGTGTTGTTGCGGCGCCGGAGGAATGAGGTGAGAGACAGAAGCGCATGTGGAGCAAAAGCACACAAAAGGCAAAGCGGCTCTGGTTTTCTGCAGACTAATGAGAGAGCCAGCTGGACCTGTAAGTGATCCCGACTGCTGAAGCGGTGAAAGAACTCCGCTTCTCCACAGCTTGTTTTGCTTCAGCATCTCTAGAAGGGGAAATGTTCGGTAATCGCTCCGAAAGTGAAGAGCGCACGGATTGGTAGGGGAGGATATGTTGGACACACGTACACTCTTATGTTTGCATGTGAAATACGCCACCTGTCCGACTGAGAAAAGACTGATGGAGGGAGAGAAAGATCTTTAGGTGTAAATCAAACTTGCCTCAGACTATTTCACCAACCGCAGTTGGACAGATATGCTGATTCCATGCGTTTGTTTTGACTACTATCTCTAGCGCGCATGATGTAAAGCATCGTTTTATAAGcctggtggagtgtgtgtgtaaagggGACTTCACCTGACAACAACTTCAACAACTTTATGCATTTTGGCCCTTTATTTACATCATAAACAGTGACTTTTGAAAGTAGTGatttacaatattgagttactcctagggctgtgcaattaatcaaatccgatttcgattttggcttctaacgattatgaaaaaccattaatcgagacaAACAATaattccattatttaccgccccctgTCCAGTTGTAaccatttgttgctcttaaaagcgcgaactAAACCGCATGCTCCTGTGTGTGTTTGCG
>TCONS_00010792
AACTAAATGGTCTCCACCTGTGTTTGAGCAGGCCTACCTTTCTCACGGTGAATCCCATGAAAGCAGAACACCAAAATGAGTTGTAATCGCGAATATAAACTGATCAAGAAACTCCTCAAGAGCAAAGCAAGAAAGTTTTTCCTCATTGTTAATTTAACATGAGTTATTTTGATAGTTGTTGTTAGTGAAAGGCATGCAATCAAGAAACTTGCCAATGGAAACTTTCAAAATGGCGGACGTCCACACCTGCAAACTAGTCTGAACTTCAACAGCAGATCGAGAAGGACAAACAATAAAATGTCAAGCGGCGAGTGTTGTTGCGGCGCCGGAGGAATGAGGTGAGAGACAGAAGCGCA
>TCONS_00011063
ATGTTCCCGCCAATATCGACACCACGTGCAGTGTGGAGTCAAACAGAGTCTCAGCAACGACTGACTACAAGCCGATCATTACAGGCCGTCTCTGATAAGGATCTTCCATGTGAATAATGCACAAAGCCTCCGGTGTTCTGGACATGTGGGTCCGGAGACTTGAGTTTTCAGCACCTGATGATGAACGCAGACCCCCGAGGCTCCTCTTTACCGAACACTGACAGAGGAAAAGCTCTCTGTTAACCCAAGTCTCACCTGATACTTCCTTGTTACCGCGAACACACATATACAGATGTGCTGAGTGACAGATGCGGCTCACTGTAATCAAACAGCAGCAGGCGCACGCTGACAGACGCACACTGGGAACCTGCTGCTGCCGCATACACACTGGGCGGCTCTCCAGGCTACATCTGTGCCATGCACACGGGGTGAAAGTGCAAAATGCAGATTTTCTGACGCCGTAAAGTGACACTGCTGGC
>TCONS_00009864
GCTTCCTGTTGTCTGACTGACCTGCTTTACTCCAAACGAACGTAAAGGAAATAGTCACAATTACGATGGCCACTAGATTGTTTAAAAGTAAAGACAATAAACAAGTAGCCTAGTCATTTTCACGAATATCTTCTGTTTTCCTCGACCTCCTGTTGGAGCAACTATTGCATGCAGATTTTCTCAGTACTTTGGTTGAAAAGACTTGGAAATGTTCCCGCCAATATCAACACCACGTGCAGTGTGGAGTCAAACAGAGTCTCAGCAACGACTGACTACAAGCCGATCATTACAGGCCGTCTCTGATAAGGATCTTCCATGTGAATAATGCACAAAGCCT

Function

GO:

id name namespace
GO:0015808 L-alanine transport biological_process
GO:0050808 synapse organization biological_process
GO:0045202 synapse cellular_component
GO:0015180 L-alanine transmembrane transporter activity molecular_function
GO:0015193 L-proline transmembrane transporter activity molecular_function
GO:0022858 alanine transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000096550

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011059 False 512 lncRNA 0.38 3 2067963 2073187
TCONS_00010789 False 495 lncRNA 0.42 2 2068112 2073187
TCONS_00010791 False 726 lncRNA 0.43 4 2073022 2236997
TCONS_00010790 False 839 lncRNA 0.43 5 2073022 2236997
TCONS_00011060 False 1144 lncRNA 0.44 4 2095436 2237093
TCONS_00011061 False 868 lncRNA 0.47 6 2136105 2479931
TCONS_00011062 False 1287 lncRNA 0.43 3 2232756 2237093
TCONS_00010792 False 356 lncRNA 0.42 2 2233478 2236997
TCONS_00011063 False 479 lncRNA 0.52 4 2239302 2479333
TCONS_00009864 True 337 lncRNA 0.42 3 2428300 2479931

Neighbor

gene id symbol gene type direction distance location
XLOC_005068 NA coding downstream 66139 2000636 ~ 2001824 (-)
XLOC_005067 NA coding downstream 66473 2000019 ~ 2001490 (-)
XLOC_005066 sox9a coding downstream 116679 1947593 ~ 1951284 (-)
XLOC_005065 CABZ01081830.2 coding downstream 373910 1693014 ~ 1694053 (-)
XLOC_005064 sstr2a coding downstream 510677 1556147 ~ 1557286 (-)
XLOC_005070 mapk8b coding upstream 25588 2505519 ~ 2522487 (-)
XLOC_005071 CU929359.1 coding upstream 99306 2579237 ~ 2617510 (-)
XLOC_005072 NA coding upstream 145738 2625669 ~ 2669500 (-)
XLOC_005073 NA coding upstream 223424 2703355 ~ 2744641 (-)
XLOC_005074 ubtd1b coding upstream 300259 2780190 ~ 2800859 (-)
XLOC_005063 CU694266.1 non-coding downstream 577375 1490472 ~ 1490588 (-)
XLOC_005062 NA non-coding downstream 614624 1452900 ~ 1453339 (-)
XLOC_005057 NA non-coding downstream 982736 1072485 ~ 1085227 (-)
XLOC_005083 NA non-coding upstream 801825 3281756 ~ 3284909 (-)
XLOC_005086 NA non-coding upstream 1039237 3519168 ~ 3544016 (-)

Expression


Co-expression Network