tdp1 (tdp1)


Basic Information

Item Value
gene id tdp1
gene name tdp1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 1193040 ~ 1203082 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039793880.1
AGTAAGGAAAAGGAGTTTCGACCCGGACACGTGTTCCTTGTGCACCTCCTGCACTGTGGTTAACGTAGACCTACTATTTGAGTTAGTTTAGCGGTGGATTGATACGAGACTCTGACTTGGCATGACTCAGGACAGTCAACATGGCAAGTGGACCATCTCCAGCAGTGATGACGATGATGAGGATCTTCCTCTTTCTGGGACTACAACATCTAAGCCCCAGCGACCCGCTGTGTCCAGTCACAGCTCCCATCTGTCTGCCTCTGCTCCCAGCCCCAAACTGGAACCAGTAACAGCTACTGTGGAGGTGAAACCGGAACCAGCAAACACTCCTGTATCCTCACTCGTTATTGGCTCTGAGGCAAGACAGTTAGCAGCGACGAACCAGTTACATCCAGTGAAGTATGAAAGTAGTCCGTCATTGGCTGGAAAGCGGAAGAAAGAGGTGTCAGACGGCTCAGGCTGGGCTCTCTCAgatagtgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatggagatGTGAAGGGGAAGAGCCTCAGTAACTTACCAAAGAGGGCGCCTCCGAGCCCTAAAACAAAGAAACCAAAGGTGGAGAAGGAGCGTCCTCCGAGTCCCCACGGCCGGCTCTACTACATCGATGAGCCAGAGGACTTCTTTGAGTCCAGTATTCCTTGTCTAAATGACCCCTACAGGTTTTACCTCAACAAAGTCACAGGCCTGGACAGGAAGTACAACAGTGGAGCTCTGCACATCAGAGACATTCTCTCTCCATTATTTGGGACCCTGAAAGAGTCTGCTCAGTTTAACTACTGCTTTGATATTGCCTGGATGGTTAAGCAGTTCCCATCAGAGTTTAGGGATCGTCCAGTTCTGATCGTCCATGGAGATAAGCGGGAGGCCAAGGCCCGGCTGGTTCAGCAGGCTCAGCCTTTTGCACATATTCGCTTCTGCCAGGCCAAGCTGGATATTGCTTTTGGAACTCACCACACGAAGATGATGTTGCTGTGGTATGAGGAAGGCTTCAGAGTCATTATTCTGACCTCCAACCTCATCAGAGCTGACTGGTACCAGAAAACACAAGGAATGTGGATGAGCCCCATGTTTCCACGGTTACCAAAGGGCAGCAGTGAGAGCGCAGGCGAGTCACCAACctttttcaagagagacctgCTGGAATACCTGGCAGCATACCGCGCACCAGAACTCGAGGAGTGGATCCAACGAATCAAAGAGCATGACCTGTCAGAGACCAGGGTTTATTTGGTCGGCTCAACCCCAGGCAGATATGTTGGCTCAGACATGGAGCGCTGGGGCCACCTGAGGCTGAGGAAGCTGTTGTACGACCACACAGACCCAGTTGCCGGGGAGGAAAAGTGGCCTGTGATTGGCCAGTTCTCCAGCATCGGCTCTATGGGACTGGATAAGACCAAATGGTTAAAAGGGGAATTTCAGCGCACAATGACCACGCTGGGGAAAGCCTCTCTTCGCTCAGACCCCCCCATGCACTTGGTGTATCCATCAGTGGAAGATGTGAGGACTAGTTTAGAAGGCTATCCAGCGGGAGGCTCTCTTCCCTACAGCATCCAGACAGCTCAGAAACAACTCTGGCTCCACTCCTTCTTCCAccgtTGGAAGGCAAATGTGACAGGAAGAAGTCATGCCATGCCCCACATCAAGACATACATGAGGACATCACCAGATTTCACTCAGCTCGCCTGGTTCCTCGtcacaagtgccaACCTGTCCAAAGCAGCATGGGGTGCACTGGAGAAGAACAACACTCAGGTGATGGTTCGTTCATACGAGCTGGGAGTCCTCTACGTGCCCGCCGCTTTTAACATGAAGACATTCCCTCTGCACAACAATCCGtttcctgcctcctcctcctctggttTCCCTGTGCCATTTGACCTCCCCCCCACATGCTACTCTTCTAaagATCAGCCTTGGATCTGGAACATTCCGTACAGCCAGGCTCCTGACACACACGGCAACATCTGGGTTCCCTcctaacaaaacacacacacacacacacacacacacactcacactgtacAGACCTCTCTATTACTATTGTCAGTAGTATATCTAGGTGTTAGTTGTcagtaacatttattttttatttttataccacACTGTAGACTCACATGTTTtctaacaataaataaaataatgttatcATTGTCTA
>XM_039793885.1
AGTAAGGAAAAGGAGTTTCGACCCGGACACGTGTTCCTTGTGCACCTCCTGCACTGTGGTTAACGTAGACCTACTATTTGAGTTAGTTTAGCGGTGGATTGATACGAGACTCTGACTTGGCATGACTCAGGACAGTCAACATGGCAAGTGGACCATCTCCAGCAGTGATGACGATGATGAGGATCTTCCTCTTTCTGGGACTACAACATCTAAGCCCCAGCGACCCGCTGTGTCCAGTCACAGCTCCCATCTGTCTGCCTCTGCTCCCAGCCCCAAACTGGAACCAGTAACAGCTACTGTGGAGGTGAAACCGGAACCAGCAAACACTCCTGTATCCTCACTCGTTATTGGCTCTGAGGCAAGACAGTTAGCAGCGACGAACCAGTTACATCCAGTGAAGTATGAAAGTAGTCCGTCATTGGCTGGAAAGCGGAAGAAAGAGGTGTCAGACGGCTCAGGCTGGGCTCTCTCAgatagtgatgatgatgatgatgatgatggagatGTGAAGGGGAAGAGCCTCAGTAACTTACCAAAGAGGGCGCCTCCGAGCCCTAAAACAAAGAAACCAAAGGTGGAGAAGGAGCGTCCTCCGAGTCCCCACGGCCGGCTCTACTACATCGATGAGCCAGAGGACTTCTTTGAGTCCAGTATTCCTTGTCTAAATGACCCCTACAGGTTTTACCTCAACAAAGTCACAGGCCTGGACAGGAAGTACAACAGTGGAGCTCTGCACATCAGAGACATTCTCTCTCCATTATTTGGGACCCTGAAAGAGTCTGCTCAGTTTAACTACTGCTTTGATATTGCCTGGATGGTTAAGCAGTTCCCATCAGAGTTTAGGGATCGTCCAGTTCTGATCGTCCATGGAGATAAGCGGGAGGCCAAGGCCCGGCTGGTTCAGCAGGCTCAGCCTTTTGCACATATTCGCTTCTGCCAGGCCAAGCTGGATATTGCTTTTGGAACTCACCACACGAAGATGATGTTGCTGTGGTATGAGGAAGGCTTCAGAGTCATTATTCTGACCTCCAACCTCATCAGAGCTGACTGGTACCAGAAAACACAAGGAATGTGGATGAGCCCCATGTTTCCACGGTTACCAAAGGGCAGCAGTGAGAGCGCAGGCGAGTCACCAACctttttcaagagagacctgCTGGAATACCTGGCAGCATACCGCGCACCAGAACTCGAGGAGTGGATCCAACGAATCAAAGAGCATGACCTGTCAGAGACCAGGGTTTATTTGGTCGGCTCAACCCCAGGCAGATATGTTGGCTCAGACATGGAGCGCTGGGGCCACCTGAGGCTGAGGAAGCTGTTGTACGACCACACAGACCCAGTTGCCGGGGAGGAAAAGTGGCCTGTGATTGGCCAGTTCTCCAGCATCGGCTCTATGGGACTGGATAAGACCAAATGGTTAAAAGGGGAATTTCAGCGCACAATGACCACGCTGGGGAAAGCCTCTCTTCGCTCAGACCCCCCCATGCACTTGGTGTATCCATCAGTGGAAGATGTGAGGACTAGTTTAGAAGGCTATCCAGCGGGAGGCTCTCTTCCCTACAGCATCCAGACAGCTCAGAAACAACTCTGGCTCCACTCCTTCTTCCAccgtTGGAAGGCAAATGTGACAGGAAGAAGTCATGCCATGCCCCACATCAAGACATACATGAGGACATCACCAGATTTCACTCAGCTCGCCTGGTTCCTCGtcacaagtgccaACCTGTCCAAAGCAGCATGGGGTGCACTGGAGAAGAACAACACTCAGGTGATGGTTCGTTCATACGAGCTGGGAGTCCTCTACGTGCCCGCCGCTTTTAACATGAAGACATTCCCTCTGCACAACAATCCGtttcctgcctcctcctcctctggttTCCCTGTGCCATTTGACCTCCCCCCCACATGCTACTCTTCTAaagATCAGCCTTGGATCTGGAACATTCCGTACAGCCAGGCTCCTGACACACACGGCAACATCTGGGTTCCCTcctaacaaaacacacacacacacacacacacacacactcacactgtacAGACCTCTCTATTACTATTGTCAGTAGTATATCTAGGTGTTAGTTGTcagtaacatttattttttatttttataccacACTGTAGACTCACATGTTTtctaacaataaataaaataatgttatcATTGTCTA

Function

symbol description
tdp1 Predicted to enable 3'-tyrosyl-DNA phosphodiesterase activity; double-stranded DNA binding activity; and single-stranded DNA binding activity. Predicted to be involved in double-strand break repair and single strand break repair. Predicted to act upstream of or within DNA repair. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in spinocerebellar ataxia type 1 with axonal neuropathy. Orthologous to human TDP1 (tyrosyl-DNA phosphodiesterase 1).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0008081 phosphoric diester hydrolase activity molecular_function

KEGG:

id description
K10862 TDP1; tyrosyl-DNA phosphodiesterase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039793880.1 True 2216 mRNA 0.50 16 1193040 1203082
XM_039793885.1 False 2174 mRNA 0.50 17 1193040 1203082

Neighbor

gene id symbol gene type direction distance location
LOC120556384 LOC104919714 coding downstream 2154 1176462 ~ 1190886 (-)
pdpr pdpr coding downstream 136746 1037755 ~ 1056294 (-)
mrpl46 mrpl46 coding downstream 162985 1021963 ~ 1030055 (-)
sv2ba LOC103359500,LOC101162590,LOC101062552 coding downstream 866312 301918 ~ 326728 (-)
mespba LOC103359507 coding downstream 896753 293684 ~ 296287 (-)
LOC120555617 NA coding upstream 256082 1459164 ~ 1507908 (-)
rhpn2 rhpn2 coding upstream 541110 1744192 ~ 1774421 (-)
lrp3 lrp3 coding upstream 615349 1818431 ~ 1831946 (-)
trnat-agu_3 NA coding upstream 630239 1833321 ~ 1833394 (-)
dnaja2a dnaja2 coding upstream 632006 1835088 ~ 1846922 (-)
G24941 NA non-coding downstream 18486 1171389 ~ 1174554 (-)
G24942 NA non-coding downstream 23281 1165662 ~ 1169759 (-)
G24935 NA non-coding downstream 41703 1151022 ~ 1151337 (-)
G24934 NA non-coding downstream 42083 1150228 ~ 1150957 (-)
G24931 NA non-coding downstream 59251 1133519 ~ 1133789 (-)
G24954 eprs non-coding upstream 5476 1208558 ~ 1209459 (-)
G24955 eprs non-coding upstream 13444 1216526 ~ 1216930 (-)
G24974 NA non-coding upstream 37685 1240767 ~ 1242703 (-)
G24978 NA non-coding upstream 49636 1252718 ~ 1254624 (-)
G24987 LOC102205592,LOC101476278,LOC102787001,LOC102297232,LOC100534518,LOC101075605 non-coding upstream 63604 1266686 ~ 1266960 (-)
pnoca NA other downstream 87873 1061104 ~ 1105167 (-)
ntrk3b NA other downstream 271491 706157 ~ 921549 (-)
LOC120555898 mctp2 other upstream 207592 1410674 ~ 1457108 (-)
LOC120556048 abcc12,LOC101479372,LOC101076737,LOC102203605,LOC100701509,LOC102304683 other upstream 307083 1510165 ~ 1555646 (-)
LOC120556047 abcc12,LOC102304683,LOC101479372,LOC102203605 other upstream 384462 1587544 ~ 1642348 (-)
cep89 NA other upstream 461688 1664770 ~ 1740839 (-)
G25228 NA other upstream 1072393 2275475 ~ 2277091 (-)

Expression


Co-expression Network