LOC120555276 (LOC100703294,LOC107381837,LOC103366994,LOC102295725,LOC102215676,LOC101474681)


Basic Information

Item Value
gene id LOC120555276
gene name LOC100703294,LOC107381837,LOC103366994,LOC102295725,LOC102215676,LOC101474681
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 39882936 ~ 39898517 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039793951.1
GTTGTTAATCTGTGTTGAGCTCTCAGTTGAACTGGAATGTGTCTGGGTGTTTGGGCCAAACTCTCCTGACAGGTTACAGCACCAGCAGATCACTGAGCGAGGTTACCCGActaaaagaagaggaggaggaggaggagtcctCTGGATCTTTAACCGTCCTGCTTCATCCTGTTTGACACGACTGAACAGCTACGATGAATCAAAGCAAGGTCGAACTTGAGCCTTTTGAGTATTCCTACTATGATTATTCAGACTGGTACACGAACAACGCAGAGCCAACCAATCCACCAAAAGAAGTTATTTTACCATGTGACCCCACAGTGGACGACAAGCTCTTCCACATATGCATGCTGTCAATATCTCTGGTGGTCATGTTAATCCTGGCAGCTCTCACCAGGAAAAACAAACTCTGCCAAGGATTTACAAGAGGATCCTCCAGTATCTTCAGTCCAGTCAACTTCCTGGACCAGACTCAGAAAAAAGGCCTGGTCATGGCTGTTTTTGGGCAGGTGTTTAGCAAGCTGTCAATGCTCGTGCTCGCCCCAGACCCTCTGCCTTTCTCCAAAGATACTCCAGCGGACATTAAAGAGTACATGAAGATAATCGCCATCTTCTACTATCCTGTCCTGTATTATCCTCTGTTGGTCTGTTGCTCTCTGCAGCACAAAGCAGGTTACGTGTTCGGGACGCTCCTCTCCTTCACTCACTTCGGGGTCCTGGTGTGGCAGAAGTTCGACTGTCCAGTGACTCCAGAGATCTATAAGTACTACGCTCTGCTTGCAAGTCTGCCTCAGCTGGCCTGCCTTGCATATCTCTGTTTCCAGTTTCCTTTGCTGTTTATGAAAGGACCAAAGACTGACGAGGACCTTGACAGCAGCTACTACACCAAATATGTGAAGTTACTTCTCAAGAAAAAGTCCTCAACTGCCAGCTCTTTAACTACAGACAAACCAACACTGGCAGAGAGAATACTGGAGGTGCCTAAGAGTTATATCTATACACCAGAAAAAGtGTTTCGTTTTCCACTAAAACTGGCAGTGTCAGCATTTGTTGCCCTCGTGGCAATATATCATATAGCATTGTTGTTAGTCGTCCTGGTAGTCCCCACTCTCCATATCGTCCGTGCCGGTATCGATGAAAACATGTACTTCCTGTTACTGGGCTTTGGGATCGTCCTGTCAGACGACAGGATGGAGGTCGTCAAAATTCTGACCTTCTATACTTGGCTGCTGGAAGTGTGTTTCCTCTGTGCAGTGACCCTGTCTTGTTTGGTCAGTCTCATCATGATCATGAGGTCCATGACACTTCACAGGTCAAACCTGAAAGGACTGTATAAGGGAGACATTTACAGCATTTATAACAGCCAGAAGACCATCCGTCCATCTAAACCTGGTATTGTCTGTTGGATGGGTTTGACAGGATACCAGGCTGCGATCATCTGCCTCGGAATGGTTATTCAGACTGTCGTGTTTTTCATCTGCTTCTTGTTCCTGGTGTTTTTGATCATTATCCCTGTTTTTTACGGCCGCAATATCATCGTTTTTGAAATTGCTGGGAAGGCATGGCCGGGCTGGGTCACACTGATCCTGGTTACAGCGCTTCAACATGTGACTGCTAAGTTTGCTTTTATCAAAAAAGAAGCTGGTACGACTGACTTGAACAACAGAGAGAGTCTGTTCCTCCTGACGTACCTGCTGTTCCTGATCAACACCCTGGTTGGACTGGTAGTCGCAATATGGAGAATGGTGATAACAGCTTTGTACAACATCGTCCATCTTGGTCGTATTGACATCAGTCTTCTGCACCGCACTGCAGAGTCCTACGACCCAGCCTACCGATACTACACCCACTCCCTGAAGGTGGAGGTCAGCCAGTCACACCCGGTGATGAAGGCTTTCTGTGGGCTGCTGGTGGACATGATGATCGAAGGCGGCAGAGTTGGACAGAAAATGAGAGACGCAGAGGAAGCCTGCTCCTCCATGCTTTCAGGGATTCAAGAGAATAGGCCGAGCAAGGCGACCAGCCGTCGGAGGATTCGCTGTCGCTGGCAGCTGCTGTACACGCTGGTCAACAACCCGTCCCTGCTGGGCTCCAGGAAGCACTTCCAGACAATGCAGACCTCGGAGAGCATCCTGAACGGGACCCCCAAACGCAGCTCAAAGAAAGGCAGCAAGAAGGAGACTGGCAAGCCTGCTGCCGAGCCAGTCCAGTCCACTGAGACCCCGTCAAACCGAGATAAAACTGATTGAGATCCCTAGTCTATACCGTATGGTTGGCAGTATACTCCAAACAAAATCCTATTTAGCAAGTATGTCGCTAAATCTagttacagtatctcacaaaagtgagtacacccctcacattttagtaaatatttcattacatcttttaatgggacaa
>XM_039793957.1
TTGTTAATCTGTGTTGAGCTCTCAGTTGAACTGGAATGTGTCTGGGTGTTTGGGCCAAACTCTCCTGACAGGTTACAGCACCAGCAGATCACTGAGCGAGGTTACCCGActaaaagaagaggaggaggaggaggagtcctCTGGATCTTTAACCGTCCTGCTTCATCCTGTTTGACACGACTGAACAGCTACGATGAATCAAAGCAAGGTCGAACTTGAGCCTTTTGAGTATTCCTACTATGATTATTCAGACTGGTACACGAACAACGCAGAGCCAACCAATCCACCAAAAGAAGTTATTTTACCATGTGACCCCACAGTGGACGACAAGCTCTTCCACATATGCATGCTGTCAATATCTCTGGTGGTCATGTTAATCCTGGCAGCTCTCACCAGGAAAAACAAACTCTGCCAAGGATTTACAAGAGGATCCTCCAGTATCTTCAGTCCAGTCAACTTCCTGGACCAGACTCAGAAAAAAGGCCTGGTCATGGCTGTTTTTGGGCAGGTGTTTAGCAAGCTGTCAATGCTCGTGCTCGCCCCAGACCCTCTGCCTTTCTCCAAAGATACTCCAGCGGACATTAAAGAGTACATGAAGATAATCGCCATCTTCTACTATCCTGTCCTGTATTATCCTCTGTTGGTCTGTTGCTCTCTGCAGCACAAAGCAGGTTACGTGTTCGGGACGCTCCTCTCCTTCACTCACTTCGGGGTCCTGGTGTGGCAGAAGTTCGACTGTCCAGTGACTCCAGAGATCTATAAGTACTACGCTCTGCTTGCAAGTCTGCCTCAGCTGGCCTGCCTTGCATATCTCTGTTTCCAGTTTCCTTTGCTGTTTATGAAAGGACCAAAGACTGACGAGGACCTTGACAGCAGCTACTACACCAAATATGTGAAGTTACTTCTCAAGAAAAAGTCCTCAACTGCCAGCTCTTTAACTACAGACAAACCAACACTGGCAGAGAGAATACTGGAGGTGCCTAAGAGTTATATCTATACACCAGAAAAAGtGTTTCGTTTTCCACTAAAACTGGCAGTGTCAGCATTTGTTGCCCTCGTGGCAATATATCATATAGCATTGTTGTTAGTCGTCCTGGTAGTCCCCACTCTCCATATCGTCCGTGCCGGTATCGATGAAAACATGTACTTCCTGTTACTGGGCTTTGGGATCGTCCTGTCAGACGACAGGATGGAGGTCGTCAAAATTCTGACCTTCTATACTTGGCTGCTGGAAGTGTGTTTCCTCTGTGCAGTGACCCTGTCTTGTTTGGTCAGTCTCATCATGATCATGAGGTCCATGACACTTCACAGGTCAAACCTGAAAGGACTGTATAAGGGAGACATTTACAGCATTTATAACAGCCAGAAGACCATCCGTCCATCTAAACCTGGTATTGTCTGTTGGATGGGTTTGACAGGATACCAGGCTGCGATCATCTGCCTCGGAATGGTTATTCAGACTGTCGTGTTTTTCATCTGCTTCTTGTTCCTGGTGTTTTTGATCATTATCCCTGTTTTTTACGGCCGCAATATCATCGTTTTTGAAATTGCTGGGAAGGCATGGCCGGGCTGGGTCACACTGATCCTGGTTACAGCGCTTCAACATGTGACTGCTAAGTTTGCTTTTATCAAAAAAGAAGCTGGTACGACTGACTTGAACAACAGAGAGAGTCTGTTCCTCCTGACGTACCTGCTGTTCCTGATCAACACCCTGGTTGGACTGGTAGTCGCAATATGGAGAATGGTGATAACAGCTTTGTACAACATCGTCCATCTTGGTCGTATTGACATCAGTCTTCTGCACCGCACTGCAGAGTCCTACGACCCAGCCTACCGATACTACACCCACTCCCTGAAGGTGGAGGTCAGCCAGTCACACCCGGTGATGAAGGCTTTCTGTGGGCTGCTGGTGGACATGATGATCGAAGGCGGCAGAGTTGGACAGAAAATGAGAGACGCAGAGGAAGGGATTCAAGAGAATAGGCCGAGCAAGGCGACCAGCCGTCGGAGGATTCGCTGTCGCTGGCAGCTGCTGTACACGCTGGTCAACAACCCGTCCCTGCTGGGCTCCAGGAAGCACTTCCAGACAATGCAGACCTCGGAGAGCATCCTGAACGGGACCCCCAAACGCAGCTCAAAGAAAGGCAGCAAGAAGGAGACTGGCAAGCCTGCTGCCGAGCCAGTCCAGTCCACTGAGACCCCGTCAAACCGAGATAAAACTGATTGAGATCCCTAGTCTATACCGTATGGTTGGCAGTATACTCCAAACAAAATCCTATTTAGCAAGTATGTCGCTAAATCTagttacagtatctcacaaaagtgagtacacccctcacattttagtaaatatttcattacatcttttaatgggacaa

Function

NR:

description
PREDICTED: stimulated by retinoic acid gene 6 protein homolog isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039793951.1 True 2400 mRNA 0.48 17 39882936 39898517
XM_039793957.1 False 2378 mRNA 0.48 17 39882936 39898516

Neighbor

gene id symbol gene type direction distance location
mpped2a mpped2,LOC106524710,LOC102220360,LOC107083882,LOC100703837,LOC102192152,LOC107381839 coding downstream 89024 39721272 ~ 39793912 (-)
zdhhc13 zdhhc13 coding downstream 236030 39629922 ~ 39646906 (-)
nav2a nav2,LOC102790384 coding downstream 402474 39362422 ~ 39480462 (-)
htatip2 htatip2,LOC102791710 coding downstream 567146 39308042 ~ 39315790 (-)
prmt3 prmt3,LOC102792178,LOC102297811 coding downstream 577007 39242675 ~ 39305929 (-)
LOC120556430 LOC101156874,LOC103142636,LOC107083861 coding upstream 4151 39902668 ~ 39910451 (-)
slc22a18 slc22a18 coding upstream 32789 39931306 ~ 39938866 (-)
samd4a samd4a,LOC102311861 coding upstream 346412 40244929 ~ 40313805 (-)
LOC120556512 glg1,LOC100701703,LOC101472041,LOC108242135 coding upstream 487580 40386097 ~ 40416063 (-)
LOC120556376 NA coding upstream 700252 40598769 ~ 40631125 (-)
LOC120556195 NA non-coding downstream 229638 39647947 ~ 39653298 (-)
G32828 NA non-coding downstream 275615 39543171 ~ 39607321 (-)
G32751 NA non-coding downstream 640833 39241889 ~ 39242103 (-)
G32749 NA non-coding downstream 644918 39237807 ~ 39238018 (-)
G32742 NA non-coding downstream 754829 39127908 ~ 39128107 (-)
G32922 NA non-coding upstream 44896 39943413 ~ 39946579 (-)
G32923 NA non-coding upstream 45854 39944371 ~ 39947111 (-)
LOC120556076 NA non-coding upstream 76336 39974853 ~ 39985779 (-)
G32943 NA non-coding upstream 127617 40026134 ~ 40038460 (-)
G32952 NA non-coding upstream 149542 40048059 ~ 40049366 (-)
slc6a5 slc6a5 other downstream 647190 39205275 ~ 39235746 (-)
LOC120556344 lrrc49,LOC102795887 other downstream 2055665 37788725 ~ 37827271 (-)
ss18l2 ss18l2 other downstream 2629510 37231141 ~ 37253426 (-)
nod2 nod2 other downstream 2991632 36883651 ~ 36891304 (-)
cylda cyld other downstream 3000141 36859547 ~ 36882795 (-)
LOC120556511 LOC102208128,LOC101468289 other upstream 151107 40049624 ~ 40142048 (-)
LOC120556146 NA other upstream 665724 40564241 ~ 40589664 (-)
G33122 NA other upstream 750159 40648676 ~ 40662621 (-)
LOC120556513 NA other upstream 762847 40661364 ~ 40663657 (-)
sirt3 sirt3 other upstream 1859110 41757627 ~ 41764896 (-)

Expression


Co-expression Network