pir (pir)


Basic Information

Item Value
gene id pir
gene name pir
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 18910086 ~ 18925628 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039794030.1
CTGACTTCCGCATTGTAGCTAGGCTACCTGTGGTGAAGAGGGATGCAGTCACAACAACAAACCATACGCTTGAGAATGAAAGTCATTCAGATATCGGTATAAAAACAGTCAAAACAACCAGATCAGTTTCGGGACTTGTTCTCTTATACTTTAAGTTTTTGCAGTTACTAGTGAATCCTTTCCCGGCACAATGATTGTGAGGAGGGTGGAAAAGACAGTTCTGAGTGTGGAACAGTCGGAGGGAGTCGGTGCTCGTGTCCGCAGGAGCATCGGTAGAAAAGAGCTAAGAAACCTGGATCCTTTCCTGATGTTGGATGAGTTCAGAGTGAGCAAGCCAGCAGGTTTTCCAGACCATCCTCACCGGGGATTTGAGACAGTTACATATGTTTTAGAAGGCATCACGGCCCATGAAGACTTCTGCGGCCATTCAGGACAACTGAAAGCTGGAGATCTGCAATGGATGACTGCAGGACAGGGGGTGGTCCATGCTGAGATGCCTGTGTCAGAGGAGCCCGTGGTGGGCTTACAGCTGTGGGTGAACCTGCCGAGACGAGACAAGATGGTGGAACCGGCGTACCAGGAGCTTAAAGGCTCAGAGATCCCCAAACCCAGCCAGGGAGGAGTTACAGTCGCTGTGATATCTGGAGAAGCTTTAGGagcaaagTCTAAAGTCTACACAAGGACACCGACCTTGTACCTGGACTTCAGACTGCAGACAGGCGCCCTGCATGTGCAGCCAGTCCCCTCAGGATGGACTACATTCATCTACACACTCTCAGGATCCATTCATGTTGGCCCAGATGAGGAGCAGCAGAAGGTGGAGCCTCATCACACTGTGGTGTTTGGAGATGGAGACTGCGTCAAAGTTAAAAACGAGGGCTCTGAAGTTTCCCATTTTGTGCTGATCGCTGGAAAACCAATCAAAGAGCCTGTGGTACAGCACGGTCCGTTTGTAATGACCACAGAGGAAGAGATTGGACAGGCTATCAGGGACTACCAGACTGGCAGAAATGGCTTTGAAAGGGCAAAAAACTGGAAATCAAAAATCAGCAACTCTTTCTAAACACTACGCCTTGGTAGAAATGTTAGCCTTACTTGTTTGCTGCTATAGAAGCATATttaaaaagatatttgttttgatgttttaaaaCATGGGTATTTTTCCCCTCATGAAATGTTCTGTACTTGTTTATCGCACATTAACTACTTTCCAGCACCTATTTTAACTTGTTACATGTCCCGTTGTTTGCCCAGTAGTAGTTAACCCTAGTAGTTCTacattgtaaaatatatattttagggAAAAAGTGTTTCTAACTGCTCTCCACTCCCCTTGTTAAATTTAAGCTTTATTACATTTTCCTTCTGCTGTTTGAAATAAAACAGTAGCAGAGCTGTTAGGA
>XM_039794031.1
ACTGACTTCCGCATTGTAGCTAGGCTACCTGTGGTGAAGAGGGATGCAGTCACAACAACAAACCATACGCTTGAGAATGAAAGTCATTCAGATATCGGTATAAAAACAGTCAAAACAACCAGATCAGTTTCGGGACTTGTTCTCTTATACTTTAAGGTAGTTTTTGCAGTTACTAGTGAATCCTTTCCCGGCACAATGATTGTGAGGAGGGTGGAAAAGACAGTTCTGAGTGTGGAACAGTCGGAGGGAGTCGGTGCTCGTGTCCGCAGGAGCATCGGTAGAAAAGAGCTAAGAAACCTGGATCCTTTCCTGATGTTGGATGAGTTCAGAGTGAGCAAGCCAGCAGGTTTTCCAGACCATCCTCACCGGGGATTTGAGACAGTTACATATGTTTTAGAAGGCATCACGGCCCATGAAGACTTCTGCGGCCATTCAGGACAACTGAAAGCTGGAGATCTGCAATGGATGACTGCAGGACAGGGGGTGGTCCATGCTGAGATGCCTGTGTCAGAGGAGCCCGTGGTGGGCTTACAGCTGTGGGTGAACCTGCCGAGACGAGACAAGATGGTGGAACCGGCGTACCAGGAGCTTAAAGGCTCAGAGATCCCCAAACCCAGCCAGGGAGGAGTTACAGTCGCTGTGATATCTGGAGAAGCTTTAGGagcaaagTCTAAAGTCTACACAAGGACACCGACCTTGTACCTGGACTTCAGACTGCAGACAGGCGCCCTGCATGTGCAGCCAGTCCCCTCAGGATGGACTACATTCATCTACACACTCTCAGGATCCATTCATGTTGGCCCAGATGAGGAGCAGCAGAAGGTGGAGCCTCATCACACTGTGGTGTTTGGAGATGGAGACTGCGTCAAAGTTAAAAACGAGGGCTCTGAAGTTTCCCATTTTGTGCTGATCGCTGGAAAACCAATCAAAGAGCCTGTGGTACAGCACGGTCCGTTTGTAATGACCACAGAGGAAGAGATTGGACAGGCTATCAGGGACTACCAGACTGGCAGAAATGGCTTTGAAAGGGCAAAAAACTGGAAATCAAAAATCAGCAACTCTTTCTAAACACTACGCCTTGGTAGAAATGTTAGCCTTACTTGTTTGCTGCTATAGAAGCATATttaaaaagatatttgttttgatgttttaaaaCATGGGTATTTTTCCCCTCATGAAATGTTCTGTACTTGTTTATCGCACATTAACTACTTTCCAGCACCTATTTTAACTTGTTACATGTCCCGTTGTTTGCCCAGTAGTAGTTAACCCTAGTAGTTCTacattgtaaaatatatattttagggAAAAAGTGTTTCTAACTGCTCTCCACTCCCCTTGTTAAATTTAAGCTTTATTACATTTTCCTTCTGCTGTTTGAAATAAAACAGTAGCAGAGCTGTTAGGA
>XM_039794033.1
AGTTCAACGTTGGCGGGAATGTTAAAACGTGATAAAGTGTTCGTGTCAGAGGCTGCAGGCTATCCACAATGAAAACATAGCCTAATAATAAAATAGGCAGATATTAAATTGTCCCCGTGCAGGAGTGTACCTAAAGCCTTCATTTAGAATAGTGTGGACATAGTAGGCTACACACTCAACATAATGAGGAAGTAGACGAATATGATCTGATATCAGAGGGCAGATCGAGGTGAAGTGAACAGATggattcctgcacacagagcGGGGAGCGTTCGGGACGGATATGAGCAAGTATTTTTGAAATGAATGTCGAGAAAGCCGTCATGAGCAGCCCTGAGATCAGCTGACGAGCACCTGATCCGCTCAGCTGATGCACGCGCAGCTGATCGCTGCTGTCAGTTTTTGCAGTTACTAGTGAATCCTTTCCCGGCACAATGATTGTGAGGAGGGTGGAAAAGACAGTTCTGAGTGTGGAACAGTCGGAGGGAGTCGGTGCTCGTGTCCGCAGGAGCATCGGTAGAAAAGAGCTAAGAAACCTGGATCCTTTCCTGATGTTGGATGAGTTCAGAGTGAGCAAGCCAGCAGGTTTTCCAGACCATCCTCACCGGGGATTTGAGACAGTTACATATGTTTTAGAAGGCATCACGGCCCATGAAGACTTCTGCGGCCATTCAGGACAACTGAAAGCTGGAGATCTGCAATGGATGACTGCAGGACAGGGGGTGGTCCATGCTGAGATGCCTGTGTCAGAGGAGCCCGTGGTGGGCTTACAGCTGTGGGTGAACCTGCCGAGACGAGACAAGATGGTGGAACCGGCGTACCAGGAGCTTAAAGGCTCAGAGATCCCCAAACCCAGCCAGGGAGGAGTTACAGTCGCTGTGATATCTGGAGAAGCTTTAGGagcaaagTCTAAAGTCTACACAAGGACACCGACCTTGTACCTGGACTTCAGACTGCAGACAGGCGCCCTGCATGTGCAGCCAGTCCCCTCAGGATGGACTACATTCATCTACACACTCTCAGGATCCATTCATGTTGGCCCAGATGAGGAGCAGCAGAAGGTGGAGCCTCATCACACTGTGGTGTTTGGAGATGGAGACTGCGTCAAAGTTAAAAACGAGGGCTCTGAAGTTTCCCATTTTGTGCTGATCGCTGGAAAACCAATCAAAGAGCCTGTGGTACAGCACGGTCCGTTTGTAATGACCACAGAGGAAGAGATTGGACAGGCTATCAGGGACTACCAGACTGGCAGAAATGGCTTTGAAAGGGCAAAAAACTGGAAATCAAAAATCAGCAACTCTTTCTAAACACTACGCCTTGGTAGAAATGTTAGCCTTACTTGTTTGCTGCTATAGAAGCATATttaaaaagatatttgttttgatgttttaaaaCATGGGTATTTTTCCCCTCATGAAATGTTCTGTACTTGTTTATCGCACATTAACTACTTTCCAGCACCTATTTTAACTTGTTACATGTCCCGTTGTTTGCCCAGTAGTAGTTAACCCTAGTAGTTCTacattgtaaaatatatattttagggAAAAAGTGTTTCTAACTGCTCTCCACTCCCCTTGTTAAATTTAAGCTTTATTACATTTTCCTTCTGCTGTTTGAAATAAAACAGTAGCAGAGCTGTTAGGA

Function

symbol description
pir Predicted to enable quercetin 2,3-dioxygenase activity. Predicted to be involved in monocyte differentiation. Predicted to be active in nucleus. Is expressed in olfactory bulb; olfactory placode; paraxial mesoderm; and somite. Orthologous to human PIR (pirin).

NR:

description
PREDICTED: pirin isoform X2

GO: NA

KEGG:

id description
K06911 PIR; quercetin 2,3-dioxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039794030.1 False 1403 mRNA 0.46 10 18910087 18925628
XM_039794031.1 False 1408 mRNA 0.46 10 18910086 18925628
XM_039794033.1 True 1647 mRNA 0.46 10 18910266 18925628

Neighbor

gene id symbol gene type direction distance location
zgc:113276 LOC104963547,LOC103365175 coding upstream 809 18899447 ~ 18909277 (+)
ace2 ace2 coding upstream 20584 18875952 ~ 18889502 (+)
scml2 scml2 coding upstream 112303 18770382 ~ 18797783 (+)
rs1a rs1,LOC101067478 coding upstream 181364 18721369 ~ 18728722 (+)
phka2 phka2 coding upstream 211588 18677341 ~ 18698498 (+)
vegfd vegfd coding downstream 410 18926038 ~ 18933824 (+)
LOC120555985 NA coding downstream 33341 18958969 ~ 18969478 (+)
LOC120555986 LOC103365180,LOC104967792 coding downstream 44958 18970586 ~ 18995278 (+)
LOC120556409 LOC104967794 coding downstream 73900 18999528 ~ 19008386 (+)
tmem39a tmem39a coding downstream 84849 19010477 ~ 19023972 (+)
LOC120556026 NA non-coding upstream 62680 18846269 ~ 18847406 (+)
G28195 homer2 non-coding upstream 294277 18607305 ~ 18615809 (+)
G28163 usp8,LOC102785891 non-coding upstream 464790 18444816 ~ 18445296 (+)
LOC120555993 NA non-coding upstream 728885 18004828 ~ 18181201 (+)
G28083 NA non-coding upstream 990890 17918900 ~ 17919196 (+)
G28393 NA non-coding downstream 128496 19054124 ~ 19055004 (+)
G28394 NA non-coding downstream 131918 19057546 ~ 19057853 (+)
G28396 NA non-coding downstream 146192 19071820 ~ 19072036 (+)
LOC120555698 NA non-coding downstream 161567 19087195 ~ 19091823 (+)
G28398 NA non-coding downstream 169057 19094685 ~ 19094900 (+)
LOC120556478 LOC103360749,LOC104942123,LOC102301404 other upstream 334144 18561873 ~ 18575942 (+)
LOC120555788 NA other upstream 1166638 17724545 ~ 17743448 (+)
LOC120556001 rbpms2,LOC107381790,LOC103368877,LOC104957780 other upstream 3423635 15475147 ~ 15486451 (+)
LOC120556433 psma4,psa4,LOC106562664 other upstream 3463594 15441455 ~ 15446492 (+)
LOC120556271 tmem138,LOC104922799,LOC102296598,LOC102204478,LOC104956289,LOC103368539,LOC102790175,LOC102222702 other upstream 3856464 15047877 ~ 15053622 (+)
LOC120555697 NA other downstream 148680 19074308 ~ 19087064 (+)
G28581 NA other downstream 561618 19487246 ~ 19487533 (+)
ercc3 ercc3 other downstream 586728 19512356 ~ 19520218 (+)
LOC120555792 pcdh9,LOC102784100 other downstream 846491 19772119 ~ 19993954 (+)
G28770 NA other downstream 1785476 20711104 ~ 20761147 (+)

Expression


Co-expression Network