gatm (gatm,LOC102780634)


Basic Information

Item Value
gene id gatm
gene name gatm,LOC102780634
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 18486062 ~ 18491068 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039794034.1
AGTCTGCTGTGAGCTGAGGCGTCTTCATGAATGAGCAAACCGAGAAGTGGATCCTGCGCTGCCGTTTGATTTTACTGGCACTTAACTATAACATTGGACAATGCTGCGAGTCAGATGTCTGAGAGGAGGTAGCAGGGGGGCCGAGGCTGCCCATCTGATCGGAGCCATGCTTGGCCGGGCGGTGACTGGATGGGTGCAGAGGGCTTTCCAGAGCACTTCCATTGCAGCAGCTGCACAGCCACGCCATGCAGCTGAAGATGTTACTGAGCCCGAGCAGCAGGAATGTCCTGTCTGCAGCTACAATGAATGGGACACACTAGAGGAGGTGATCGTAGGTCGCGCTGAAAATGCCCATGTGCCTGCCTTCACTGTGGAAGTGAAAGCTAACACATATGAGAAGTATTGGCCCTTTTACCAAAAGTATGGGGGCCAGTCTTTTCCTGCGGACCACTTGAAGAAAGCTGTTGCTGAGATTGAGGAAATGTGCAATATTCTGCGCCACGAGGGCGTCAATGTAAGGAGACCAGAACCCATCGACTGGTCCCTGGAATACAAAACACCAGACTTCACATCATCAGGCATGTATGCTGCCATGCCCAGAGACATCCTTCTGGTTGTCGGGAATGAGATTATTGAGGCTCCTATGGCCTGGAGGGCTCGCTTCTTTGAATACCGAGCCTACAGGCCTTTGATCAAGGAGTACTTCAGAAACGGTGCCAAATGGACCACTGCTCCTAAACCCACTATGGCCGATGAGCTGTATGATCAGGACTACCCCATCCGCACAGTGGAGGACAGACACATGCTGGCAGCCGAGGGGAAGTTCGTGACCACAGAGCATGAGCCCTGCTTCGATGCTGCTGACTTCATTCGAGCTGGGAGGGACCTGTTTGTCCAGAGGAGTCAGgttaCAAATTACATGGGAATTGAGTGGATGCGCCGCCATCTGGCTCCGGACTACAAGGTCCACATCATCTCATTCAAGGATCCTAACCCCATGCACATTGATGCCACTTTTAACATCATTGGACCAGGACTGGTGTTGTCAAACCCTGATCGTCCATGTCGCCAGATCGACATGTTCCATAAGGCTGGTTGGACCGTTGTGAAACCTCCGACACCTCTGATTCCTGATGACCACCCACTGTGGATGTCTTCCAAATGGCTGTCCATGAATGTTCTGATGTTGGGTGAGAAGCGTGTTATGGTTGACGCCAATGAAAGCACCATTCAGAAAATGTTTGAGAACCTTGGTATCAAGACCATAAAGGTGAATATTCGCCATGCCAACTCCTTGGGTGGTGGATTCCACTGCTGGACAACTGATGTCCGCCGCCGTGGTACCCTGGAGTCCTACTTCCACTAGCCTTGCCAGAAATAGGCAGTTTTTATTGAGCTTTAAAGATTAAAGCCTCAGACCGGAATCTTAATTCCACTTTGAATATAGAGTCTTTATTGACAGTCAATCGTGTATGTACACACTAATCACAAATGTACTTTTGGCAAATTTCTTAAAAAGTGTTAGTTCGTTTGGGTGTCACCTGCTGCAACTCAAAAGTCAAAACAGTGAACAGTAAATTGCTCAAACATGTATGAATCACACTAATACTACGGCAATCGTATCATGATAGCACCAAAATCAATTTCTGAAATGTATTGGTCTTTATGTCCTAAATGAACATGCATGAATTGTTTTGACTTGACATTGCTGGCCATCATCACAGTGCCTTTGAAAACAGCTTTGTTcagatatttacagtatatgctcAGAAGCAACAAGTGAACATAACTTTACTTCAATCAGTAATCTCAATATTAACTGCATTTCTGGCCTGGCTATTGTGAAGCTGAATTGTTTATGGCTCATACATCTAAAAGTCATAACTTTGAGGACAAGGTACAATTTGGTATGTGAAAGTCATTAGACAAGGAAGAGAGAAGCTACCTCCTCGTGGAAACGTCAGACACCATAATTCTAGCTTTttccaaagtatttttttatttaaaggaatGTATAAAAGTTGTTAAGTATGTCATTATTAAACTATAAATTTGTTATCGCTAGTATATTATTTTGTAAAGATTTTAATTGATTGAACAGACACAgttctatttatatttttcatacTCTTTATTGGATTTCCCAACAATTAGTGtttgaatatatttacataaaaagTATGCGGTCCATATCAGATATTGCATACCTTTTGCCTTTTCTCCTATTGCAAAACTGGGCCAGTTACATGCTGCAAGTCATTCTCACTGAACTGATTGGCTGCTTTTGTGTGCAAAgcaaaaatgtatgttttatgaTTCCTTTGCTGCATATACAACTCAATATAGGATGTTTAACTCTCAAGTCTGCCttgatatttattttgaaacaatGAATTCAAGGGAAGTTATTGCTCAACAGAGGAATGCATGTAGTTGTGTTTTGTATTATGCCACAttattaaatgtaattaaaatagTTGGGTCagtt

Function

symbol description
gatm Predicted to enable glycine amidinotransferase activity. Predicted to be involved in creatine biosynthetic process. Predicted to be located in mitochondrial inner membrane. Predicted to be active in mitochondrion. Is expressed in several structures, including digestive system; mesoderm; musculature system; ovary; and yolk syncytial layer. Human ortholog(s) of this gene implicated in AGAT deficiency and Fanconi renotubular syndrome 1. Orthologous to human GATM (glycine amidinotransferase).

NR:

description
PREDICTED: glycine amidinotransferase, mitochondrial

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines molecular_function

KEGG:

id description
K00613 GATM; glycine amidinotransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039794034.1 True 2488 mRNA 0.43 9 18486062 18491068

Neighbor

gene id symbol gene type direction distance location
hdc hdc,LOC106587893,LOC103379072 coding upstream 27510 18454656 ~ 18458552 (+)
LOC120555692 LOC104956759 coding upstream 46622 18433272 ~ 18439440 (+)
mapk6 mapk6 coding upstream 66512 18403621 ~ 18419550 (+)
leo1 leo1 coding upstream 105716 18362149 ~ 18380346 (+)
scg3 scg3 coding upstream 164758 18306445 ~ 18321304 (+)
pde8a pde8a,LOC100690151,LOC102210709,LOC101463592,LOC102780154 coding downstream 14460 18505528 ~ 18557335 (+)
LOC120555641 whamm,LOC102778540 coding downstream 94705 18585773 ~ 18604970 (+)
LOC120555930 NA coding downstream 148214 18639282 ~ 18642799 (+)
LOC120556269 tm6sf1 coding downstream 168794 18659862 ~ 18663990 (+)
zrsr2 zrsr2 coding downstream 173439 18664507 ~ 18670988 (+)
G28163 usp8,LOC102785891 non-coding upstream 40766 18444816 ~ 18445296 (+)
LOC120555993 NA non-coding upstream 304861 18004828 ~ 18181201 (+)
G28083 NA non-coding upstream 566866 17918900 ~ 17919196 (+)
G28065 NA non-coding upstream 596845 17888761 ~ 17889217 (+)
G28066 slc24a5,LOC102781271 non-coding upstream 609889 17871746 ~ 17876173 (+)
G28195 homer2 non-coding downstream 116237 18607305 ~ 18615809 (+)
LOC120556026 NA non-coding downstream 355201 18846269 ~ 18847406 (+)
G28393 NA non-coding downstream 563056 19054124 ~ 19055004 (+)
G28394 NA non-coding downstream 566478 19057546 ~ 19057853 (+)
G28396 NA non-coding downstream 580752 19071820 ~ 19072036 (+)
LOC120555788 NA other upstream 742614 17724545 ~ 17743448 (+)
LOC120556001 rbpms2,LOC107381790,LOC103368877,LOC104957780 other upstream 2999611 15475147 ~ 15486451 (+)
LOC120556433 psma4,psa4,LOC106562664 other upstream 3039570 15441455 ~ 15446492 (+)
LOC120556271 tmem138,LOC104922799,LOC102296598,LOC102204478,LOC104956289,LOC103368539,LOC102790175,LOC102222702 other upstream 3432440 15047877 ~ 15053622 (+)
kcna4 kcna4 other upstream 3521000 14889390 ~ 14965062 (+)
LOC120556478 LOC103360749,LOC104942123,LOC102301404 other downstream 70805 18561873 ~ 18575942 (+)
LOC120555697 NA other downstream 583240 19074308 ~ 19087064 (+)
G28581 NA other downstream 996178 19487246 ~ 19487533 (+)
ercc3 ercc3 other downstream 1021288 19512356 ~ 19520218 (+)
LOC120555792 pcdh9,LOC102784100 other downstream 1281051 19772119 ~ 19993954 (+)

Expression


Co-expression Network