LOC120555377 (LOC101062555,LOC102216107,LOC102302772,LOC101473643)


Basic Information

Item Value
gene id LOC120555377
gene name LOC101062555,LOC102216107,LOC102302772,LOC101473643
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 28225624 ~ 28227538 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039794036.1
AACGAGATTTCACCGCTTGTAACGTAGACTTACGTATTTCCGGTCACAGTCATACTTCCTTTCAGACCATCGGCGGACGGGAGCAAGGAAGAGACAGTagAATGCTGGCCACCAGAGCACTTCGACTTGTTGGCAAACGTGCCATTTCCACATCTGTCTGTGTACGTGGAGGACATGGTGTTGCGAAGGTAGAGGACTACACCCTCCCTGCCTACTTTGACAGGCGGGAGAATCCCCTCCCGGACATCAGCTATGTGCAGAACCTGAGTCCAGAGCAGGCGTCcctgaaggagaaggagaagggcTCCTGGGCTGCACTCTCTGATGAGGAAAAGATTGCATTGTACCGCATCAGCTTCAAACAGAGCTTTGCTGAGATGACCCAGGGATCGTCAGAGTGGAAGTCTGTGGTTGGAGGGATGTTTTTCTTAATTGGATTCACTGGCTTGGTTGTGCTCTGGCAGAGAAAGTATGGTATGTCTGCCAAAAAGTGTAATGGAAAGATTAGAAATTATGTGTCTGCAAATCTATTCAGGATTTGATGTAGTGATGCTTCT
>XM_039794037.1
GAAATATCGTAAAACGAGATTTCACCGCTTGTAACGTAGACTTACGTATTTCCGGTCACAGTCATACTTCCTTTCAGACCATCGGCGGACGGGAGCAAGGAAGAGACAAATGCTGGCCACCAGAGCACTTCGACTTGTTGGCAAACGTGCCATTTCCACATCTGTCTGTGTACGTGGAGGACATGGTGTTGCGAAGGTAGAGGACTACACCCTCCCTGCCTACTTTGACAGGCGGGAGAATCCCCTCCCGGACATCAGCTATGTGCAGAACCTGAGTCCAGAGCAGGCGTCcctgaaggagaaggagaagggcTCCTGGGCTGCACTCTCTGATGAGGAAAAGATTGCATTGTACCGCATCAGCTTCAAACAGAGCTTTGCTGAGATGACCCAGGGATCGTCAGAGTGGAAGTCTGTGGTTGGAGGGATGTTTTTCTTAATTGGATTCACTGGCTTGGTTGTGCTCTGGCAGAGAAAGTATGGTATGTCTGCCAAAAAGTGTAATGGAAAGATTAGAAATTATGTGTCTGCAAATCTATTCAGGATTTGATGTAGTGATGCTTCT

Function

NR:

description
PREDICTED: cytochrome c oxidase subunit 4 isoform 1, mitochondrial

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0001666 response to hypoxia biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0004129 cytochrome-c oxidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039794036.1 False 557 mRNA 0.49 4 28225624 28227526
XM_039794037.1 True 565 mRNA 0.48 4 28225624 28227538

Neighbor

gene id symbol gene type direction distance location
dusp22a LOC104927513,LOC103374648 coding downstream 1418 28205726 ~ 28224206 (-)
irf8 irf8 coding downstream 21746 28199110 ~ 28203878 (-)
foxf1 foxf1 coding downstream 128477 28093058 ~ 28097147 (-)
trnal-uaa_2 NA coding downstream 345411 27880131 ~ 27880213 (-)
LOC120556190 LOC104927843,LOC104965371,LOC100704236 coding downstream 354367 27863663 ~ 27871257 (-)
gse1 gse1 coding upstream 11992 28239530 ~ 28420256 (-)
atmin atmin,LOC102791907 coding upstream 229862 28457400 ~ 28464778 (-)
cenpn cenpn,LOC102790979 coding upstream 238487 28466025 ~ 28469643 (-)
LOC120555776 cdyl2,LOC102790696 coding upstream 251330 28478868 ~ 28507241 (-)
ppfibp2a ppfibp2,LOC102297953,LOC101477983 coding upstream 689123 28916661 ~ 28937943 (-)
G30634 NA non-coding downstream 177 28225093 ~ 28225447 (-)
G30586 NA non-coding downstream 187417 28037134 ~ 28038207 (-)
G30579 NA non-coding downstream 206549 28011000 ~ 28019075 (-)
G30576 mc1r non-coding downstream 224196 28001197 ~ 28001428 (-)
G30551 LOC102797876,LOC102077336,LOC101469017,LOC102307906,LOC103372225 non-coding downstream 268000 27956247 ~ 27957624 (-)
G30644 NA non-coding upstream 115162 28342700 ~ 28392518 (-)
G30691 NA non-coding upstream 441060 28668598 ~ 28668964 (-)
G30759 NA non-coding upstream 912816 29140354 ~ 29140638 (-)
G30852 pax6 non-coding upstream 1159219 29386757 ~ 29396683 (-)
G30898 NA non-coding upstream 1387902 29615440 ~ 29616375 (-)
dbndd1 dbndd1,LOC103136566 other downstream 152145 28046759 ~ 28073479 (-)
G30577 mc1r other downstream 223154 28001640 ~ 28002470 (-)
G30465 furin,LOC102777676 other downstream 453814 27766831 ~ 27771810 (-)
G30422 got2 other downstream 592002 27626893 ~ 27633622 (-)
G30319 NA other downstream 909466 27310171 ~ 27316158 (-)
LOC120555801 LOC103366895,LOC102194278,LOC102079963,LOC102301182,LOC101475385,LOC102792507 other upstream 220418 28447956 ~ 28550000 (-)
G30693 NA other upstream 441653 28669191 ~ 28669868 (-)
mafa maf,LOC101477682,LOC100702616,LOC102790406,LOC102298902,LOC104927625,LOC102192535,LOC105919746 other upstream 542463 28770001 ~ 28846965 (-)
LOC120555471 hipk3 other upstream 990315 29217853 ~ 29269183 (-)
prrg4 NA other upstream 1083012 29310550 ~ 29314709 (-)

Expression


Co-expression Network