LOC120555410 (LOC102205483,LOC101478550,LOC103365221,LOC100711032,LOC102299296,LOC102798867)


Basic Information

Item Value
gene id LOC120555410
gene name LOC102205483,LOC101478550,LOC103365221,LOC100711032,LOC102299296,LOC102798867
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 21699803 ~ 21709381 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039794087.1
AGCTGATGACTGAAATACTCCACACAGTCTCCGTCCTCAATACATGGATTTCGTCACACGAATGATTTTCTAGCCAATTACGCACAATGTGGAAAATCTCATGCAGGAGGAAGACTCGCAACTTCATGGGATTTCACTCAGGAATGTGTCCTCTGCGCGCACTTGGAGACATGCAGAGGCAACACGTTCTAGCCTGGTTCCACTCTGTTTTATGATACCGAGCCGCGGTGGACCTGCGATTTATTCCTGTGATGGGGAGAATCCCATGGAGCTGCGGCGCCGTGATCCTGCTGGCCATCATTAGCTCATGTCGTGCTGTCACTCTGGAGTCCGTCCACTGGAGCAGCTCCAATGCAAAATTTAGTCCAGGTCTGGGCCTGGTCCTGTATCCTCAGATCGGGGACAAGATGGACATTGTGTGTCCCCGGGCAGATGCTTCCACGGGGGGAAAGGAGGAGTTTTACCGAGTGTACCTGGTCTCCAGGAGTCAGATGGAGAGCTGCACCATCGACAAGACAGACACGCCCCTGCTGAACTGTGACAAGCCTCACCAGGACGTAAAGTTCACGTTCAAGTTCCAGGAGTTCAGCCCCAACCTGTGGGGTCTGGAGTTCCTCAAGGGGAGGGACTATTATATCACCTCCACCTCTGCAGGCTCTCTGCAGGGTCTGGATAATACTAATGGAGGGGTGTGTAGAACCAAAGCCATGAAGCTGGTGCTCAGAGTCGGCCAAAGCTCTTCAGATCCACCTTCAACCCTCCAGGAGTCCCCCACCAGATTCCCACCCACACAACCAAAGTCTAAGTCCAAAGACCTCCCTGCGAAAGAACAggatataaaaaacaaaaccgACTCAGGCTCAGAAACAGGACAAACAAACCCCAGTGGCAGCGGTGGCTCTAAGCCAGGACTGTTCATGTGGGTTGTCTGTGGCGGTGTGATCCTCCTTCTGGTCATCATAATTCTGCTGGTCGTACTGTGGAGGCACCGTCCGCGTCGCTGTGTCCCAGACAGCCAGCAGTCGGCCTCCGTTTCCCTCAACACTTTGGCCGTGGCAAAGCGGGACAGCATCGGCAGCGACAACAATGGCTCGGACCGCAGCGATATTGTCTTTCCTCTGCGAGCTTCTGACAGCATGGCCTGCCGTCATTATGAGCGTGTGAGCAGCGACTACGGGCCCCCTGTGTACATAGTTCAGGAGATATCGCCCCAGAGTCCCACCAACATCTACTACAAAGTCTAATGTTTGCTGCTCTAATGCCTGTCTTTGGCTGATAATCCTAAACTAACACTTCCATTTCTTTAGTTTGCAGTGGGTGTGAAAAAAGGTCACATAAGTGATCATACATAGCCTGAGAGCTGTTGCACTGACAAATGCTGTTGAACCATTTTGTTGTCTTAATACTGTGAGAGGAACTTTATGTGTCATAATTGTGTTCAGTTTTTCTGGAAGTGGGCAGCAAATACCAGTGGTGGGATGtagctaagtacatttactcaagtagccTATTACTtatgtacaattttgaggtactttacttacCATTTCATGACATTTTACTTCCACTCCACTATATTGTGCTATTTACTCCACCACATTTATATGGCAGCCatactttgcagattaagattttgcacacaaaacaagtTTATGAAAGATGTTGCAACAGTATGCAACAGTAAGTACTTAAAATAAGCTCCACCTCAACCAACTATAAAATGATCAATCtaaaaacataatatataatagaaAAATAGCCTAACACTCAaaggagtacttttactttacaatGCAGTACATTTAgctaataatacatacatacacaacgtATGAAGAGCTTTTAAAATATGATTCATTGGAAGAAATTAATCTACCCAACAGTATAAAGAAATTGACGAAAGATTCAATTATTTGGTTAGTTTAAGTCAGTTAAAATGAATCTGACTGTTTGTTGAAGACatttttcatgaaaaaaacTGTCGACCATGACGTGGTTTCAGCTTCTCCAATGTGATgacttgctgcttttctttgtcttaaatgacagtaaactgaatcaTTTTGAGGATGGACGGACAAAATGAGACGTTTGAGGACGTCACTCAGAgttctgggaaattgtgatgcaTTCCTCACTATTTTCATGTGTTTTACAAACAATTAAAGGATTGAGCAAGAAAATAACCAGCAGATCTTAGatcagttgcagccctaaagaaTAGTTCAAAAATAGCTCCACCTCAAGTGTGTATTAATGCAACTTTTCTCTGCATTGagttcttttacttttgatacttcaagtacattttactgataaatacttacaaactttttacttaagtaacattttgaatccACACATTTTTAACTTTGATTTGTAATGGAGTATTGTTAAAGCtaattggtacttttacttgagtaagtgatgtaaatacttcctccaccacagGCAAGTACtggtttgtttatgtatttttttttttttaagaaaatgaatTTCTCACTGCCACTGCACATGGCAGCTTCAATTGTacagtaaatgtgtgttttatttaatttattgatACAGCTGAAAAAAAGGATTGATGATAACCTCCAACACACAAAATCTACTGTACATTTTTCACAACTGAATTGTTTAAACCTTTTTGAAATGCTGTTCAGTGAAATCAATCTTTCTATTCCATGCTGctttcattttaatattgtgtCACCTTCTGTTTAAACAGAATTATTACTAAACAGTGGTCAATATATAGCAAGGGGGccatgcttaaaaaaaaaaaatgtaattaggcTACTCAACATGGGAAATGTTTTGTAACTTGTGAAAGGTGTGAAAGTTTAAAAAACGGGACAACAACTTGTCAGTAGTCTCTTCATCCGTGTCTGTCTTCTCTTCCTGCTTTCCAAAACCAACAAGAGCAACAGTGAAAGTGATGGACACACAGGCTATGATATGATGAAGAAATGAGAGTTTGAATAAGAGTAGACTGCTGATAAATCACAGCTTTCCTTGTGGTTACAAAATGACTTGGCAGCACAACGCGTGCAATAGTAGCTGCACCACAATTTGCATACAGCTAGTGTTGAGACCCTTGTGGTCCCATTCAGCAATTACAGCCACTGTCTTATAGTCAAAGGACTTGTAGACATTTTCGTTGGTACATTAGCCGTGGTTGATGTGAAACTAACTTAAAACTCATATAACATAATTTTGGGTGGGTAGACGCTGCTCAGAGGAGCACGTCTCGTCCTTACTTAATGGTGCTCATGGGATAGTGACTGTCATTCTGCTGTGAACAGCACCATGATGAATTTTTCTCCATGTCTTATTAGGTtgaatggacaaaaaaaaatgaataatgcaaAAATACAGTTTGATTCAGTTTGTGTGAAAGTG
>XM_039794088.1
CAGCTGATGACTGAAATACTCCACACAGTCTCCGTCCTCAATACATGGATTTCGTCACACGAATGATTTTCTAGCCAATTACGCACAATGTGGAAAATCTCATGCAGGAGGAAGACTCGCAACTTCATGGGATTTCACTCAGGAATGTGTCCTCTGCGCGCACTTGGAGACATGCAGAGGCAACACGTTCTAGCCTGGTTCCACTCTGTTTTATGATACCGAGCCGCGGTGGACCTGCGATTTATTCCTGTGATGGGGAGAATCCCATGGAGCTGCGGCGCCGTGATCCTGCTGGCCATCATTAGCTCATGTCGTGCTGTCACTCTGGAGTCCGTCCACTGGAGCAGCTCCAATGCAAAATTTAGTCCAGGTCTGGGCCTGGTCCTGTATCCTCAGATCGGGGACAAGATGGACATTGTGTGTCCCCGGGCAGATGCTTCCACGGGGGGAAAGGAGGAGTTTTACCGAGTGTACCTGGTCTCCAGGAGTCAGATGGAGAGCTGCACCATCGACAAGACAGACACGCCCCTGCTGAACTGTGACAAGCCTCACCAGGACGTAAAGTTCACGTTCAAGTTCCAGGAGTTCAGCCCCAACCTGTGGGGTCTGGAGTTCCTCAAGGGGAGGGACTATTATATCACCTGCTCTCTGCAGGGTCTGGATAATACTAATGGAGGGGTGTGTAGAACCAAAGCCATGAAGCTGGTGCTCAGAGTCGGCCAAAGCTCTTCAGATCCACCTTCAACCCTCCAGGAGTCCCCCACCAGATTCCCACCCACACAACCAAAGTCTAAGTCCAAAGACCTCCCTGCGAAAGAACAggatataaaaaacaaaaccgACTCAGGCTCAGAAACAGGACAAACAAACCCCAGTGGCAGCGGTGGCTCTAAGCCAGGACTGTTCATGTGGGTTGTCTGTGGCGGTGTGATCCTCCTTCTGGTCATCATAATTCTGCTGGTCGTACTGTGGAGGCACCGTCCGCGTCGCTGTGTCCCAGACAGCCAGCAGTCGGCCTCCGTTTCCCTCAACACTTTGGCCGTGGCAAAGCGGGACAGCATCGGCAGCGACAACAATGGCTCGGACCGCAGCGATATTGTCTTTCCTCTGCGAGCTTCTGACAGCATGGCCTGCCGTCATTATGAGCGTGTGAGCAGCGACTACGGGCCCCCTGTGTACATAGTTCAGGAGATATCGCCCCAGAGTCCCACCAACATCTACTACAAAGTCTAATGTTTGCTGCTCTAATGCCTGTCTTTGGCTGATAATCCTAAACTAACACTTCCATTTCTTTAGTTTGCAGTGGGTGTGAAAAAAGGTCACATAAGTGATCATACATAGCCTGAGAGCTGTTGCACTGACAAATGCTGTTGAACCATTTTGTTGTCTTAATACTGTGAGAGGAACTTTATGTGTCATAATTGTGTTCAGTTTTTCTGGAAGTGGGCAGCAAATACCAGTGGTGGGATGtagctaagtacatttactcaagtagccTATTACTtatgtacaattttgaggtactttacttacCATTTCATGACATTTTACTTCCACTCCACTATATTGTGCTATTTACTCCACCACATTTATATGGCAGCCatactttgcagattaagattttgcacacaaaacaagtTTATGAAAGATGTTGCAACAGTATGCAACAGTAAGTACTTAAAATAAGCTCCACCTCAACCAACTATAAAATGATCAATCtaaaaacataatatataatagaaAAATAGCCTAACACTCAaaggagtacttttactttacaatGCAGTACATTTAgctaataatacatacatacacaacgtATGAAGAGCTTTTAAAATATGATTCATTGGAAGAAATTAATCTACCCAACAGTATAAAGAAATTGACGAAAGATTCAATTATTTGGTTAGTTTAAGTCAGTTAAAATGAATCTGACTGTTTGTTGAAGACatttttcatgaaaaaaacTGTCGACCATGACGTGGTTTCAGCTTCTCCAATGTGATgacttgctgcttttctttgtcttaaatgacagtaaactgaatcaTTTTGAGGATGGACGGACAAAATGAGACGTTTGAGGACGTCACTCAGAgttctgggaaattgtgatgcaTTCCTCACTATTTTCATGTGTTTTACAAACAATTAAAGGATTGAGCAAGAAAATAACCAGCAGATCTTAGatcagttgcagccctaaagaaTAGTTCAAAAATAGCTCCACCTCAAGTGTGTATTAATGCAACTTTTCTCTGCATTGagttcttttacttttgatacttcaagtacattttactgataaatacttacaaactttttacttaagtaacattttgaatccACACATTTTTAACTTTGATTTGTAATGGAGTATTGTTAAAGCtaattggtacttttacttgagtaagtgatgtaaatacttcctccaccacagGCAAGTACtggtttgtttatgtatttttttttttttaagaaaatgaatTTCTCACTGCCACTGCACATGGCAGCTTCAATTGTacagtaaatgtgtgttttatttaatttattgatACAGCTGAAAAAAAGGATTGATGATAACCTCCAACACACAAAATCTACTGTACATTTTTCACAACTGAATTGTTTAAACCTTTTTGAAATGCTGTTCAGTGAAATCAATCTTTCTATTCCATGCTGctttcattttaatattgtgtCACCTTCTGTTTAAACAGAATTATTACTAAACAGTGGTCAATATATAGCAAGGGGGccatgcttaaaaaaaaaaaatgtaattaggcTACTCAACATGGGAAATGTTTTGTAACTTGTGAAAGGTGTGAAAGTTTAAAAAACGGGACAACAACTTGTCAGTAGTCTCTTCATCCGTGTCTGTCTTCTCTTCCTGCTTTCCAAAACCAACAAGAGCAACAGTGAAAGTGATGGACACACAGGCTATGATATGATGAAGAAATGAGAGTTTGAATAAGAGTAGACTGCTGATAAATCACAGCTTTCCTTGTGGTTACAAAATGACTTGGCAGCACAACGCGTGCAATAGTAGCTGCACCACAATTTGCATACAGCTAGTGTTGAGACCCTTGTGGTCCCATTCAGCAATTACAGCCACTGTCTTATAGTCAAAGGACTTGTAGACATTTTCGTTGGTACATTAGCCGTGGTTGATGTGAAACTAACTTAAAACTCATATAACATAATTTTGGGTGGGTAGACGCTGCTCAGAGGAGCACGTCTCGTCCTTACTTAATGGTGCTCATGGGATAGTGACTGTCATTCTGCTGTGAACAGCACCATGATGAATTTTTCTCCATGTCTTATTAGGTtgaatggacaaaaaaaaatgaataatgcaaAAATACAGTTTGATTCAGTTTGTGTGAAAGTG

Function

NR:

description
PREDICTED: ephrin-B2a-like isoform X1

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K05463 EFNB; ephrin-B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039794087.1 True 3405 mRNA 0.42 5 21699804 21709381
XM_039794088.1 False 3394 mRNA 0.42 5 21699803 21709381

Neighbor

gene id symbol gene type direction distance location
LOC120556067 NA coding upstream 18038 21674424 ~ 21681765 (+)
mrpl16 mrpl16,LOC102799737 coding upstream 25504 21668518 ~ 21674299 (+)
tgfbrap1 tgfbrap1 coding upstream 32086 21650745 ~ 21667717 (+)
grtp1a grtp1 coding upstream 73286 21614701 ~ 21626517 (+)
adprhl1 adprhl1,LOC102790835 coding upstream 86516 21605117 ~ 21613287 (+)
LOC120555860 NA coding downstream 202025 21911406 ~ 21921876 (+)
lmo7b NA coding downstream 480515 22189896 ~ 22227106 (+)
cdh16 cdh16 coding downstream 659970 22369351 ~ 22407710 (+)
rrad rrad coding downstream 664753 22374134 ~ 22377140 (+)
nae1 nae1 coding downstream 724130 22433511 ~ 22440373 (+)
G28880 cul4a non-coding upstream 61722 21636531 ~ 21638081 (+)
G28875 NA non-coding upstream 83645 21615716 ~ 21616158 (+)
G28812 NA non-coding upstream 243263 21357332 ~ 21456540 (+)
LOC120556583 NA non-coding upstream 286594 21409652 ~ 21413209 (+)
G28804 NA non-coding upstream 378178 21321312 ~ 21321625 (+)
G28976 NA non-coding downstream 9107 21718488 ~ 21718824 (+)
G28990 NA non-coding downstream 177208 21886589 ~ 21889549 (+)
G29004 NA non-coding downstream 374564 22083945 ~ 22084401 (+)
G29005 NA non-coding downstream 419583 22128964 ~ 22129578 (+)
LOC120556188 NA non-coding downstream 450189 22159570 ~ 22160895 (+)
dcun1d2b dcun1d2,LOC102792160 other upstream 95897 21596331 ~ 21603906 (+)
tpp2 tpp2 other upstream 136989 21525592 ~ 21562814 (+)
grk1a grk1 other upstream 266656 21421110 ~ 21433147 (+)
G28826 NA other upstream 296353 21396213 ~ 21403450 (+)
G28770 NA other upstream 938656 20711104 ~ 20761147 (+)
gpc5a gpc5,LOC103365231 other downstream 10653 21720034 ~ 21872025 (+)
ankrd11 ankrd11 other downstream 1055338 22764719 ~ 22895007 (+)
LOC120555548 LOC103365626,LOC104942698 other downstream 1272402 22981783 ~ 22994164 (+)
G29292 NA other downstream 1427351 23136732 ~ 23137027 (+)
igdcc3 igdcc3 other downstream 1733768 23443149 ~ 23517263 (+)

Expression


Co-expression Network