LOC120555422 (pcdh20)


Basic Information

Item Value
gene id LOC120555422
gene name pcdh20
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 20442399 ~ 20446773 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039794105.1
AGCACTCAGCAGAGGTCTGCGCTGCTCAATGCTCAAAATGTCTAGGTTACTTAAACTGTCACTCTTCCTGCCATAAGTGGAAAGTGCTTGACTAGGACATAAACATGTTCAACAGCAGACACCCCAGCCTTAGCAAAAGAGGAGGAATATGGGGACTGTGCATCCTCTTGCTTTACACAAGCCCTCTTTCCTGTTTTGCAAATTTCAGCAAAGCAAAAGAGCTGATCTATAAAATAAAGGAGGGATTACCCAGGGGGACCTTCATAGGGGCCATTGGAGTAGACTTACATTTGGATTTTACTGTGGAGCCCCCCTTTTTATTCAATCTTCCACAAAAGAAGGTCAGTGGACAGTATGTGAGCCTAAATAATACCACCGGGGAGCTTTACACATCTGCTATAGAGATTGACAGGGAGACCCTCTGTCCTGATAACTCGGAGGGCCATGGATGTGCTCTCTCActggatgtgtttgtgttgcctcAGCAGTACTTTCAGCTCGTGAAAGTTAAGATCTTTATTGAGGATGTGAATGACAACAGGCCAAAGTTCCCCGTGGATGAGATCTGTATGTCTGTCCCGGAAAACACACCTATCAATGCTCGTTATGCGGTGGAGCAGTCAGCAGTTGACCCAGACCTGGGTCTTCACGGTGTACAGACCTACTGGCTTGTTAATGACTTTGGCATGTTCACACTGGATGTTGAGGAGAATGAAGGAGGTGAGCTGACACCCTTCCTCATTGTTACAGACGCTTTGGACAGAGAGACCCAGGCTGAATACATTACAGATATCATTGCAGAGGATGGAGGGACCCCTCCTCTACTCGGAGCGGCTACTTTAAAAATTATCATCACAGATGTGAACGATAACTGCCCCCAATTCACAGAGTCACAAATTAATGTGACTCTGCATGGGAATACCACAAAAGGGGCACATTTGGCACGTCTGCATGCTTTTGACCATGACCTTGATGCTAATGCTCAGATCAGCTATGCTTACAGTGAACGCGTGCCAAGGGACACCAGGAGCTTGTTCCATTTGGACAGAATCACAGGGGTGATCAAGCTAGCAGGGAAAATAGACACTGGCACAGCCACGTTTTACAAACTCACCATTCTAGCCAATGGACCTGGTTGTATCCCTGCAGTTGCCACTGTTTCTGTCCATATAATCAAAGTTGTTACAGGACCCCCTGCTCTCATACCCCGATACATTGCAGCAGAAAAGGATGGGGTGGTGACAATAAAGGAGTCAGAGCCAGCGTTTTCTCCAATTGCTTTTTTTACTGTCAAAAACATTGATATGAACCATAGGGTGGACTGTCATTTGGAAGGGACTGGCCCATTCAGGCTTGGCCCTTATCAGATGTTCAAGAATGAATACCTGCTGGAGACTACAGAGCCCTTGGACTATGAAAAGATACAGGAGTATGAGCTAATTGTGGTTGCTAAGAATGCTCAAGGGCTCGTCATCAAGACCTTCCTCAAGGTGCAGGTATTGGATGAGAATGATAATGCACCAGTGTTTCAGCAGTCTTTGGTGGAAATATCTGTGGAGGAGAACAATCCGCCAAATACCTTTCTGACCCAGCTCCAAGCCACAGACCAGGACAGCGAAAGCAGAGGGGATGTCATCTACCTCCTTGGAGGCGACGCACCAGGGATCTTTGTTGTGGATCGTGTGACAGGTGTCCTGACTGTGACCACATCGCTGGACCGTGAGGAGAAAGAGACATACCGGTTCATAGTGAGAGCAGTGGACCAGGGGACACCCAGGAGGGAGTCGATTGCAACTGTGGTGGTGAGCGTGCAAGACCGCAATGACAACAGTCCACGCTTCATTAATAAGGACTTCACCTTCTTTGTGCCAGAGAACTTCCCAGGGTACGGTGAAATTGGGGTCCTCTCTGTGACAGATGCTGACGCTGGGGAAAATGGTTGGGTGGCCCTTTCTATCCTCAACGGCAGCGACATCTTTATGATAGATACAGGCCGAGGGGCACTGAGGGCCAAGACATCACTGGACCGTGAGCAACAAGGGACATACCAGTTGTGGATTGAGGCCGTCGACGGTGGAGAGCCTGCGCTTTCCTGTGTGACTATGGTGACCGTGCTGTTGTTGGATGTAAATGACAACCCGCCTATTGTCCTCTTCCCCCAATCCAATCAGTCCTACATGCTGGTACTACCCAATACACTACCAGGAACATCAATAACAGAGGTCTACGCTGTGGATAAGGATACAGGCATGAACGCTGTGATCGCCTACAGCATTGTTAAGAGGAAAGGTGGAGAGCCAGGGTCATTTGCCATTGACccagaaacaggaaacatcacattAAAGAGGGAGCTCAGCAACCGGGGGCTCTATAGCCTTCTGGTGAAGGTCAGTGATCATGGTCAGCCTGAACCGCTTTACTCAACAGTCATGGTTAACTTCTTTGTCAATGAAACAGTAAGCAACGAGAGTTACATCCAAAGTCTGCTGACCAGAGAGGCTGAAATTGAGGTagaggagagaccctggtacaAAGGCCAGATGACAGAGGGGCCTGAGAGGTATGAGTTGTTCCCCTGTCGGCCTGTCCTCATTGTTCTTTCAGTGACATGTCTGGGGCTGTTCTTCTCAGTTGTTACACTGACATCTTACATATGCTGCAAGAGATTTAAAAAGCAGCGGAAAAAAAGATCAGAAGTGGAGATACCGTTAAAAATGAAGAATGACTCAATGCAGGTTGTGAACAGAAAGCTCAGGCAGATCTCAAACATCTGATATTCAGTTGTCTACACATCCAAAACAATCACTGTTTACATGAATGTTTACAAAAACTCACTGTGAGAAGTGTAGTTCTTACATGAAGTTGCTCTTTTTGCTTTTATCATATGATTGTTATTACTGAAATGTGATTTAAATAATATGCCACGAGGTTCTGTCATTAAAAAGGTAACACAGTACCTTTCTACCTTTCTTCCAAACTTGAAATAATATCTATAAACCATGAAAATTGTCCAGAGATGATGTGTCAAACAACCAAAGTAAGGAATAAATTAGTACTGGCGTCAAAGTAATAACAGCCTTATTACAAAGTCATAAGAGCAACTCATTGAAGATTACTCAATCTAAGGTCCTATGTAAATACTGTACAAAATGTTTTACAACTTTATATAAAACTTTTGCATTGCATGAAAAGACAGTTCAAGCCACAAGAAATGTTTCTTTCttcataaatgttttaaaaaaaaatgcatctcttTACATTACCTGTCACAGTTACATATACTTAAGTGATTATACTTGGAAGTTGGATACTACATCTGGAATctaaataattttatttatttaagtaaccATACATTTCAAAACTGATTGATACAGAAAAGGCTTATCAAAatgtattactttatttaagGCATTGTACTCCATATTTgaccaaaaaagaaaatcttatcTCAATTCCCACTTACTAGTTTCTCCAAAGATTTCAATCATGTCTCACAGTCTTCTTTAGGTCAGTTGTAATGGCGTGATATGCAGTCCGTGATATATACAATGGCATATGAGTGTTATACCATTATATGAGGTTGAAAGTTGCAGAAAAAGATAGTATGTTGACCTTGACTTATGATTTGTCAGATTGTATGATGTCTGAGAGCTATGGTTAGTAACCAGATACCCTACTTTCTGTGAAGGCTCACAGTAGTTACTGATCACACATGTAAACCTTTAAAGGCCATCTTGGTATAGCAAAGAGTCACATATTTTGTATCACACTGAACAATTTGAATTGTATCCAAACTTCTCTGTCATAAAAGTGCTTCAAGTTGCATACATCACCTTCCTTTATACAACCATGCAATTATTAATGTGTCTGTGAAAACATGCTAAGTGTTTGTGAAAGAAAATCAAAGTAACTATTAAagatgctttattttttttataata

Function

symbol description
pcdh20 Predicted to enable calcium ion binding activity. Predicted to be involved in cell adhesion. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane.

NR:

description
PREDICTED: protocadherin-20

GO: NA

KEGG:

id description
K16498 PCDHD1; protocadherin delta 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039794105.1 True 3944 mRNA 0.43 2 20442399 20446773

Neighbor

gene id symbol gene type direction distance location
pou4f1 pou4f1,LOC103143517,LOC106914826 coding upstream 824947 19614845 ~ 19617452 (+)
obi1 NA coding upstream 828674 19606123 ~ 19613725 (+)
rbm26 rbm26 coding upstream 880674 19549354 ~ 19561725 (+)
LOC120556547 LOC103359454,LOC102294290,LOC100700192 coding upstream 896743 19535697 ~ 19545656 (+)
LOC120556555 LOC103359454,LOC102294290 coding upstream 908586 19528085 ~ 19533813 (+)
LOC120555780 diaph3 coding downstream 57325 20504098 ~ 20692974 (+)
LOC120556481 NA coding downstream 840070 21286843 ~ 21287974 (+)
nkpd1 LOC104962748 coding downstream 884380 21331153 ~ 21352064 (+)
trmt10c NA coding downstream 925384 21372157 ~ 21374142 (+)
ercc5 ercc5,LOC104958986 coding downstream 934436 21381209 ~ 21390547 (+)
G28721 LOC103376870 non-coding upstream 86045 20356072 ~ 20356354 (+)
G28696 NA non-coding upstream 328039 20113987 ~ 20114360 (+)
LOC120555794 NA non-coding upstream 470159 19971219 ~ 19972240 (+)
G28590 NA non-coding upstream 930657 19511014 ~ 19511742 (+)
LOC120555526 NA non-coding upstream 942176 19496214 ~ 19500223 (+)
G28745 NA non-coding downstream 132369 20579142 ~ 20580115 (+)
G28776 NA non-coding downstream 330770 20777543 ~ 20777816 (+)
G28777 NA non-coding downstream 350639 20797412 ~ 20797671 (+)
G28778 NA non-coding downstream 379451 20826224 ~ 20826477 (+)
G28792 NA non-coding downstream 626768 21073541 ~ 21073755 (+)
LOC120555792 pcdh9,LOC102784100 other upstream 448445 19772119 ~ 19993954 (+)
ercc3 ercc3 other upstream 922181 19512356 ~ 19520218 (+)
G28581 NA other upstream 954866 19487246 ~ 19487533 (+)
LOC120555697 NA other upstream 1355335 19074308 ~ 19087064 (+)
LOC120556478 LOC103360749,LOC104942123,LOC102301404 other upstream 1866457 18561873 ~ 18575942 (+)
G28770 NA other downstream 264331 20711104 ~ 20761147 (+)
G28826 NA other downstream 949440 21396213 ~ 21403450 (+)
grk1a grk1 other downstream 974337 21421110 ~ 21433147 (+)
tpp2 tpp2 other downstream 1078819 21525592 ~ 21562814 (+)
dcun1d2b dcun1d2,LOC102792160 other downstream 1149558 21596331 ~ 21603906 (+)

Expression


Co-expression Network