pou4f1 (pou4f1,LOC103143517,LOC106914826)


Basic Information

Item Value
gene id pou4f1
gene name pou4f1,LOC103143517,LOC106914826
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 19614845 ~ 19617452 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039794113.1
CAGTAGACAGATAAGTGCGTCTGAGAGACTGCAGGCATCTCTGTGATCTCCGGGCTCAAGGCTGCACTCGGCGCACTACACAGCGAACTGCACTGCATCATTACTGGATAGGCAAAGGATCACTGTGTATCTATGACTATTTTCCTGCTCTTGTAGCAGTTTTCCCCCCTTCTTCCCGTGCACTTTAATTGGAGAAGCTCGCCAAGATGATGTCCATGAACAGCAAACAGCCGCACTTCGCAATGCATCCCTCTTTACCCGAGCACAAGTACACCACTTTGCATTCCAGCTCGGAAGCTATAAGGAGAGCCTGTCTACAAACTCCACAGCTACAGAATAACATATTTGCGAGCCTGGATGAGACCCTGCTGGCCCGGGCTGAGGCTTTGGCGGCCGTGGACATCGCCGTGTCCCAGGGCAAGACGCACCCGTTCAAGCCCGACGCCACCTACCACACGATGAGCACGGTGCCATGCTCGTCGACATCCACTGTGCCACTggcccaccaccaccatcaccaccaccaccaccaccatcagaACCTGGAGCCACAGGATATCATGGACCACATCACCTCGCCGTCCCTCGCCCTGATGTCCGGTGCGCACGACGGGTCCGGTGGAGGAGGCGGTGGCGGCGGAGGTGGCGGCGGAGGGCTCATCTCCACCTCCTCTGCCCACCCGCACTCTCACATGCACGGCTTGAGTCACCTCTCCCACCAGGCTATGAGCATGAACTCGCCTCTCACCCACCACGGGCTCTTACCGGGCCATCACGGGGGGAGCCAAGTCGGCCCAGGACTCACTAACACCGGACTCTCCTCCATCAATGACTCAGACACAGACCCAAGGGAGCTGGAGGCTTTCGCGGAGCGCTTCAAGCAGCGGAGGATCAAACTGGGGGTGACCCAGGCGGACGTGGGAGGCGCTCTGGCTAATCTCAAAATCCCCGGCGTGGGATCACTGAGCCAAAGTACAATTTGTCGATTCGAGTCGTTAACTCTCTCCCACAACAACATGATTGCGCTCAAACCTATCCTCCAGGCCTGGCTAGAGGAGGCCGAGGGGGCCCAGAGGGAGAAAATGAGCAAACCTGACATTTTCAACGGAGGGGAAAAGAAACGCAAGAGGACCTCGATAGCGGCCCCAGAAAAGAGGTCTTTGGAGGCTTACTTCGCCGTACAGCCTCGGCCGTCGTCCGAGAAAATAGCAGCTATAGCGGAAAAGTTGGACCTGAAAAAAAATGTGGTGCGAGTGTGGTTTTGTAACCAAAGACAGAAGCAGAAGAGGTTGAAATTTTCCGCTGCTCACTGATgggcaaagaaaagaaaaagaaaaaaaaaaagttgtgggACCGAATTTGGGGACCAAGAGACACTAAGACACCATTTTCAGTCTTTTGTCTCCAGCGATTTTACACGTTGGTGCACAATGGGCTTTAGATAGGCCTACCCATTTTATGAGGCTTCATATATCTTGTTTATTTTCACGTTATCGGTGAATGTGAAGTATGCAAATAACAGATTACACAAGTTTCGCTCAGTTGTTACGAGGGAAAAAGTTTAGCGACGTCGAAATTGCCTTTTAAAACATGTGGAGGGAGGTAATTTGCTTGATACTATAGCGAGTTATTTTCTCCTGATAGGCCTATTATTTGAAGTATAGCCATTTACGAATTACCTCATTGATTGTTGAACTGTGTTTCTGGTTTGATTTTTGTCGTTGTTGGTATAGAATATTTCATGAATCTGTTCATTTATTCATGTgttcatttcttcttcttttggagGCTGCTATAAACTCAAGTTTAGTTGCAAACGTTCATGGCTATAACGAAAACATTGTTTAGGCCTGCATGGAATCCTAATTCACGGGCGGCAATTTAGGCTGTCACATCTAGAGatatatttattttgaatttgcACAAAAGACCCTTTAGGTTTATAGATCGGTTGATGTcgaaatgttttttgtatataCAGACATCACTTTGTCACTTATCAGAGGTGAGCTCCAGTGTTTTGGAAGTCAATTATAGGCTCTATTGACACCATTGGCATCACGAGGAGGAGTTCCAAACAGATCCAGAGAGCACGAAATCCTTGTCTGCTTCATCAAGGAGATAGCACCAcggaaacaaaacaagttttcttTCATGTGTTTTAGTTTGCAgtgc

Function

symbol description
pou4f1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within heart development. Predicted to be located in nucleus. Is expressed in nervous system. Orthologous to human POU4F1 (POU class 4 homeobox 1).

NR:

description
PREDICTED: POU domain, class 4, transcription factor 1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09366 POU4F, BRN3; POU domain transcription factor, class 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039794113.1 True 2175 mRNA 0.49 2 19614845 19617452

Neighbor

gene id symbol gene type direction distance location
obi1 NA coding upstream 1120 19606123 ~ 19613725 (+)
rbm26 rbm26 coding upstream 53120 19549354 ~ 19561725 (+)
LOC120556547 LOC103359454,LOC102294290,LOC100700192 coding upstream 69189 19535697 ~ 19545656 (+)
LOC120556555 LOC103359454,LOC102294290 coding upstream 81032 19528085 ~ 19533813 (+)
wdsub1 wdsub1 coding upstream 155846 19446170 ~ 19458999 (+)
LOC120555422 pcdh20 coding downstream 824947 20442399 ~ 20446773 (+)
LOC120555780 diaph3 coding downstream 886646 20504098 ~ 20692974 (+)
LOC120556481 NA coding downstream 1669391 21286843 ~ 21287974 (+)
nkpd1 LOC104962748 coding downstream 1713701 21331153 ~ 21352064 (+)
trmt10c NA coding downstream 1754705 21372157 ~ 21374142 (+)
G28590 NA non-coding upstream 103103 19511014 ~ 19511742 (+)
LOC120555526 NA non-coding upstream 114622 19496214 ~ 19500223 (+)
LOC120556586 NA non-coding upstream 116621 19498093 ~ 19498224 (+)
LOC120556587 NA non-coding upstream 116972 19497738 ~ 19497873 (+)
G28580 LOC103359460 non-coding upstream 128320 19486270 ~ 19486525 (+)
LOC120555794 NA non-coding downstream 353767 19971219 ~ 19972240 (+)
G28696 NA non-coding downstream 496535 20113987 ~ 20114360 (+)
G28721 LOC103376870 non-coding downstream 738620 20356072 ~ 20356354 (+)
G28745 NA non-coding downstream 961690 20579142 ~ 20580115 (+)
G28776 NA non-coding downstream 1160091 20777543 ~ 20777816 (+)
ercc3 ercc3 other upstream 94627 19512356 ~ 19520218 (+)
G28581 NA other upstream 127312 19487246 ~ 19487533 (+)
LOC120555697 NA other upstream 527781 19074308 ~ 19087064 (+)
LOC120556478 LOC103360749,LOC104942123,LOC102301404 other upstream 1038903 18561873 ~ 18575942 (+)
LOC120555788 NA other upstream 1871397 17724545 ~ 17743448 (+)
LOC120555792 pcdh9,LOC102784100 other downstream 154667 19772119 ~ 19993954 (+)
G28770 NA other downstream 1093652 20711104 ~ 20761147 (+)
G28826 NA other downstream 1778761 21396213 ~ 21403450 (+)
grk1a grk1 other downstream 1803658 21421110 ~ 21433147 (+)
tpp2 tpp2 other downstream 1908140 21525592 ~ 21562814 (+)

Expression


Co-expression Network