LOC120555430 (galnt8,LOC103358106)


Basic Information

Item Value
gene id LOC120555430
gene name galnt8,LOC103358106
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 29126788 ~ 29136061 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039794118.1
GGGCATCAGAGTGAGGGCTGAAATCCACTCTTCCAGCTAATGTGGACTTAAGGGtagggttgttgttgttgttgttgttggggtgTGGAGAAAGCACCAGAAATTTAAGGCAGGGgaatattttcttttccttttaatgcaaggcacaaaaaaacacatgccaTGAGCAGAAGCACCAGGATGAGATCTGGCTGGATTAAAGGATCAATTCTGGCTTTTGCCCTGGCTGCAGCACTGTTATACCTGGGCTCCATAAAGAGGGAGGTTTATAACCATTCGAAGAAACTGCAGAGGGCCCACCACAACGAATCCATCAGGGATCAGGGAATGCTCACGAGGATGGACAAGATAGAAATCGACATCAGCAGGCTGCTCAATCTGatgaaaaaaattcaaaagaaGGAACCAGTGAAACGCAACAATACAGAGGTGAAGATGGAGAGGAAGGTTGTGAGGAAGCTATACCCAAACTCCGCTCTGTTCAGCAAGTGGGGTGATGCACTATCAGAGGAAGAGCAGAAGGAGGCTGAGATGTTGTACCAGAGATATGGCTACAACGCCTTCCTCAGCGACAGGCTGCCCCTCAACAGAGAGATCCCAGATACCAGGCCCACCAGGTGCGTTGAGAAAAAGTACCCCGAGGATTTGCCTTCCATGAGCGTTGTGTTAATCTACCTGGATGAAGCTCTTTCTATCATCAAAAGGGCCATCCGCAGCATCATAGACAAGACGCCAGCTCGGCTGCTGAAAGAAATCATACTGGTGGATGACCACAGCACTAATGAGGATTTAATGGAGAAACTGGATGAATACGTCAACTCTATCGACGAGGAGTTGCCAGGCCTGGTGAAGAAAGTCAGGCACTCTGAGCAGCTCGGCCTcacccaggcaagactgtcggGATGGAGGGCTGCTGTGGGGGACGTGGTGGCTATCTTAGACGCTCACGTAGAAGTCCATGTACAATGGGCGGAACCGTTGTTGGCTCGGATTAAAGAGGACCGCACTGTGATATTGACACCAGTGTTTGACAAAGTCAATTTTGATGACCTGACACTGAATCCCTATATACCTGCGGCGGATGCCTTTGACTGGGCTCTGTGGTGCATGTACGAATACTTCAGACCTGAGTGGTACGCTTTAAAGGACGACTCACAACCTGGAAAGAGCCCCTCCGTAATGGGGATTCTTGTAGCTGATCGCAAGTTCTTTGGCGAGATCGGAAGCCTTGATGGTGGAATGAAAATATATGGTGGTGAAAATGTGGAACTCGGCATCCGGGTGTGGCTGTGTGGAGGAAGCATAGAAGTTATACCTTGCTCTAAAATTGCCCACATTGAACGGGCCAAAAAGCCTTATCTTCCAGACTTGAGTGAAATGGTGAAGCGTAATGCACTGAGGGTGGCAGAGGTGTGGATGGACGAATATAAATACAATGTCAACGTTGCCTGGAACCTTCCCATAGAGAAACATGGGATAGATATCGGGGATGTGTCGGAGAGGAAAAAGTTGAGAGAGAAGCTTAAATGCAAGCCCTTTAAGTGGTATCTTGATCATATTTACCCCCAGCTGGACCCTCTGCAGGACCTGCTAGGTTATGGAGTGCTGATAAATGATCTGGCGCCATATATCTGCATTGACCAAGGCCCAATGCCTGGGAATATACCCACTGTATATGGATGCCACTACCACTCTTCTCAGCACTGTTATTATCGCACCGACGGACAACTCTACATCGGCAGAATCAAATCTCACAAGTACAACAGCAACCGCTGTCTGGTGGACCCCGGCACTGGAGTCTACCCGGGACTCTACGAGTGCAAAACAGCCCAGCAGAAGAAATTCCACATGTTATGGGATTTCAAACAGGATGGACCTatacagaacagagaaacaaagagatgCCTGGAAATTGCGAAGGCTGATGACGGCAATTACAAACTTGTTGTTAAGCAGTGTAGTAGTCAGAGCTGGAAGATACAACATCTCATCAAAGACCACTGAAAGATTGTTGGGCATGGCCCAAAAGACAAGTAACAGTAACTGAGCCATTATTGCACAAAAACTGCATCTCTGAGAAAGAATGACTGCTTGTCTTTGGGGTTTCGTTGAGTTTACATTTTGTACCAGAGGACTTGGATCCACAAGATTCAAAGTGTGCAATTAAAGCTGTgaattacttttatttaattattgttttgGCCTTGTAAGTTTTGACAAAAGTAACTTTCTTGGTTTTGAATACAAACATGTGCTCTTGAA
>XM_039794119.1
CCACAACGAATCCATCAGGGATCAGGGAATGCTCACGAGGATGGACAAGATAGAAATCGACATCAGCAGGCTGCATTTTGATAGTGACAAAGGAGGTGCCAGTCCCAATCTGGAAAGTCTTGGATCAAGTTCCGCAAAGATCTGACACAAATTTCAATCTGatgaaaaaaattcaaaagaaGGAACCAGTGAAACGCAACAATACAGAGGTGAAGATGGAGAGGAAGGTTGTGAGGAAGCTATACCCAAACTCCGCTCTGTTCAGCAAGTGGGGTGATGCACTATCAGAGGAAGAGCAGAAGGAGGCTGAGATGTTGTACCAGAGATATGGCTACAACGCCTTCCTCAGCGACAGGCTGCCCCTCAACAGAGAGATCCCAGATACCAGGCCCACCAGGTGCGTTGAGAAAAAGTACCCCGAGGATTTGCCTTCCATGAGCGTTGTGTTAATCTACCTGGATGAAGCTCTTTCTATCATCAAAAGGGCCATCCGCAGCATCATAGACAAGACGCCAGCTCGGCTGCTGAAAGAAATCATACTGGTGGATGACCACAGCACTAATGAGGATTTAATGGAGAAACTGGATGAATACGTCAACTCTATCGACGAGGAGTTGCCAGGCCTGGTGAAGAAAGTCAGGCACTCTGAGCAGCTCGGCCTcacccaggcaagactgtcggGATGGAGGGCTGCTGTGGGGGACGTGGTGGCTATCTTAGACGCTCACGTAGAAGTCCATGTACAATGGGCGGAACCGTTGTTGGCTCGGATTAAAGAGGACCGCACTGTGATATTGACACCAGTGTTTGACAAAGTCAATTTTGATGACCTGACACTGAATCCCTATATACCTGCGGCGGATGCCTTTGACTGGGCTCTGTGGTGCATGTACGAATACTTCAGACCTGAGTGGTACGCTTTAAAGGACGACTCACAACCTGGAAAGAGCCCCTCCGTAATGGGGATTCTTGTAGCTGATCGCAAGTTCTTTGGCGAGATCGGAAGCCTTGATGGTGGAATGAAAATATATGGTGGTGAAAATGTGGAACTCGGCATCCGGGTGTGGCTGTGTGGAGGAAGCATAGAAGTTATACCTTGCTCTAAAATTGCCCACATTGAACGGGCCAAAAAGCCTTATCTTCCAGACTTGAGTGAAATGGTGAAGCGTAATGCACTGAGGGTGGCAGAGGTGTGGATGGACGAATATAAATACAATGTCAACGTTGCCTGGAACCTTCCCATAGAGAAACATGGGATAGATATCGGGGATGTGTCGGAGAGGAAAAAGTTGAGAGAGAAGCTTAAATGCAAGCCCTTTAAGTGGTATCTTGATCATATTTACCCCCAGCTGGACCCTCTGCAGGACCTGCTAGGTTATGGAGTGCTGATAAATGATCTGGCGCCATATATCTGCATTGACCAAGGCCCAATGCCTGGGAATATACCCACTGTATATGGATGCCACTACCACTCTTCTCAGCACTGTTATTATCGCACCGACGGACAACTCTACATCGGCAGAATCAAATCTCACAAGTACAACAGCAACCGCTGTCTGGTGGACCCCGGCACTGGAGTCTACCCGGGACTCTACGAGTGCAAAACAGCCCAGCAGAAGAAATTCCACATGTTATGGGATTTCAAACAGGATGGACCTatacagaacagagaaacaaagagatgCCTGGAAATTGCGAAGGCTGATGACGGCAATTACAAACTTGTTGTTAAGCAGTGTAGTAGTCAGAGCTGGAAGATACAACATCTCATCAAAGACCACTGAAAGATTGTTGGGCATGGCCCAAAAGACAAGTAACAGTAACTGAGCCATTATTGCACAAAAACTGCATCTCTGAGAAAGAATGACTGCTTGTCTTTGGGGTTTCGTTGAGTTTACATTTTGTACCAGAGGACTTGGATCCACAAGATTCAAAGTGTGCAATTAAAGCTGTgaattacttttatttaattattgttttgGCCTTGTAAGTTTTGACAAAAGTAACTTTCTTGGTTTTGAATACAAACATGTGCTCTTGAA

Function

symbol description
galnt8 Predicted to enable polypeptide N-acetylgalactosaminyltransferase activity. Predicted to be involved in O-glycan processing. Predicted to be located in Golgi membrane. Predicted to be active in Golgi apparatus.

NR:

description
PREDICTED: probable polypeptide N-acetylgalactosaminyltransferase 8

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K00710 GALNT; polypeptide N-acetylgalactosaminyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039794118.1 True 2262 mRNA 0.47 11 29126788 29136061
XM_039794119.1 False 2042 mRNA 0.47 12 29126788 29135762

Neighbor

gene id symbol gene type direction distance location
spon1a spon1 coding downstream 62231 28985561 ~ 29064557 (-)
syt9a LOC103368648,LOC102215875,LOC102789824,LOC101479370,LOC100702345 coding downstream 163115 28941368 ~ 28963673 (-)
ppfibp2a ppfibp2,LOC102297953,LOC101477983 coding downstream 188845 28916661 ~ 28937943 (-)
LOC120555776 cdyl2,LOC102790696 coding downstream 619547 28478868 ~ 28507241 (-)
cenpn cenpn,LOC102790979 coding downstream 657145 28466025 ~ 28469643 (-)
kiaa1549lb kiaa1549l coding upstream 18911 29154972 ~ 29216732 (-)
depdc7a depdc7 coding upstream 148245 29284306 ~ 29294681 (-)
qser1 qser1 coding upstream 163294 29299355 ~ 29309999 (-)
eif3m eif3m coding upstream 182028 29318089 ~ 29326464 (-)
rcn1 rcn1,LOC102786392 coding upstream 216187 29352248 ~ 29375600 (-)
G30691 NA non-coding downstream 457824 28668598 ~ 28668964 (-)
G30644 NA non-coding downstream 734270 28342700 ~ 28392518 (-)
G30634 NA non-coding downstream 901341 28225093 ~ 28225447 (-)
G30586 NA non-coding downstream 1088581 28037134 ~ 28038207 (-)
G30579 NA non-coding downstream 1107713 28011000 ~ 28019075 (-)
G30759 NA non-coding upstream 4293 29140354 ~ 29140638 (-)
G30852 pax6 non-coding upstream 250696 29386757 ~ 29396683 (-)
G30898 NA non-coding upstream 479379 29615440 ~ 29616375 (-)
G30905 NA non-coding upstream 525607 29661668 ~ 29662088 (-)
G30969 NA non-coding upstream 1026419 30162480 ~ 30288433 (-)
mafa maf,LOC101477682,LOC100702616,LOC102790406,LOC102298902,LOC104927625,LOC102192535,LOC105919746 other downstream 279823 28770001 ~ 28846965 (-)
G30693 NA other downstream 456920 28669191 ~ 28669868 (-)
LOC120555801 LOC103366895,LOC102194278,LOC102079963,LOC102301182,LOC101475385,LOC102792507 other downstream 576788 28447956 ~ 28550000 (-)
dbndd1 dbndd1,LOC103136566 other downstream 1053309 28046759 ~ 28073479 (-)
G30577 mc1r other downstream 1124318 28001640 ~ 28002470 (-)
LOC120555471 hipk3 other upstream 81792 29217853 ~ 29269183 (-)
prrg4 NA other upstream 174489 29310550 ~ 29314709 (-)
elp4 elp4,LOC103373817 other upstream 265974 29402035 ~ 29461236 (-)
LOC120556497 csmd1,LOC102783723 other upstream 481259 29617320 ~ 29965747 (-)
fam120b fam120b,LOC104944276 other upstream 1379194 30515255 ~ 30532142 (-)

Expression


Co-expression Network