trpm5 (trpm5)


Basic Information

Item Value
gene id trpm5
gene name trpm5
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 14062036 ~ 14090460 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039794175.1
cagcagcaggaggagaagaaacatttatttgagcCATGCAGGAGAGACAAGGCACACCTCTGGTGTCACTGCAGCCACAGACCCGATGTCTGCGATGTGGGGACGTGCTGGAGTGGTCAGAGgagcacagTGTCCTGCTGGGCTGTTCCTGCTGCTCTACAGTGGATGAGACTCTGGAGAATGTAGCCAGAGGCATGGCTATCAGAATGAAGAGGGAAAAGAGTCACTGGGCATCTGGAAGAGTGGGCGACATTGACTTTTCTGGCCCTACTAAGACAAGAGGAAAGTTTGTGAGGGTGCGCAGCAACACAGACCCAGTGCTGATCTACCAGATGCTGACAGAGGAGTGGGGCCTTGCTCCTCCACACTTGGTGGTGGCCCTGGTCGGAGGAGATGAGCTGGCCCAGATGAAGCCCTGGCTCAGGGACACGCTGAGAAAAGGACTTGTGAAGGCTGCACAGAGCACAGGGGCATGGATTTTGACTAATGGCCTTCGCTTTGGCATCACCAAGCACTTGGGCCAGGCTGTGAGGGATCACTCGCTGGCCAGCACCTCCTCTAAAGTGCGTGTAGTGGCCATTGGCATCGCACCCTGGAACATGATCCACAACCGAGAGGCACTACTCACTAGCCACTACGCCAAGGTGGACGAGCCTGCAGTATACCAGCCACAGGACTTGCCCCATGGGTCGGTGTATTCTCTGGACAGCCACCACTCCCACTTTGTGCTGGTGGAGGAGGATCCCAACAGACCAGGAGCCACCAGTGAAATGAGGGTGAAGCTGCTCAAACACATCTCTCTCCAGCGCACTGGTTATGGAGGCACAGGCAGTTTCGAGATCCCTGTTCTGTGTCTCTTGGTCCACGGGGAGCCCAGGATCCTAAAGAGGATGTACAAAGGCATTGGCAATTCGACACCATGGCTGATCCTGGCAGGCTCGGGAGGCGTGGCTGACATCCTCGTCACACTGATGAATAGGGGCTGCTGGGATATGGACAGCGTTCATGAGCTGTTGCTGGACACCTTTCCAAATGCCCACCACAGCACAGACATCAGTAACTGGGTCAAGCTGATCCAGAAGATACTTGATCACGGGCATCTCCTTACTGTCCACGACCCTAAACAGGAGAGCTCTGAGCTGTCCACGGTCATCCTCAAAGCGCTAGTCAAGGCATGTAAGAGCCAAAGTCAGGAAGCTCAAGACTTCCTGGATGAACTGAAGCTGGCTGTGGCCTGGAACAGGGTGGATATTGCCAAGAGTGACATCTTTAATGGAGATGTGGAGTGGAAGGCATCGGACCTTGAGGAGGTGATGATGGATGCACTGATCAACGACAAACCGGACTTTGTGCGCCTCTTTGTGGACAACGGCGTGAACCTGGGCGAGTTCCTTACCTACGGTCGTCTCCAGGAGCTTTACTGGTCCGTGTCGGAGAAGAGCCTCTTTCACAACCTGCTCCTCAAAAAGTACGAGGAGAAGCAGCTTCTGCTTGGAGCTGCCAGGACACCTGGTCCACCTGGGCACCATCCGCCTGAGCAAGGGGACCGGAAAGCCCGCTTCACCCTCTTCGAAGTCGCCAAAGTGCTCAAAGACTTTCTCCATGACTCCTGCAAAGGCTTTTACCAAAAGATTCCCACAGAGAAGCCAGCGAAGGGTCGACTGTTCCACAGCCAGAAGAACCTGCCCGAGTTAGAGGAACGCTGCGAGCATCCTTGGAGGGATCTCTTCCTCTGGGCCGTCCTTCAGAACCGACAGCAGATGGCTAACTACTTCTGGGCTATGGGCCCTGAGGCGGTTGCGGCAGCGCTGGCGGGTTGTAAGATTCTGAAAGAGATGGCACGACTGGAATCCGAGGCCGAGTCTGCGCGTAGTATGAAGGAGGCCAAGTATGAGCAGTTCGCCCTTGATGTCTTCGGAGAGTGTTACTCCAACAGTGAAGACAGGGCGTATGCTTTGTTAGTGAGAAGAACACACTGCTGGAGCAAATCTACGGTCCTTAACCTGGCCACTGAGGCAGATGCCAAATCCTTCTTTGCCCACGATGGAGTTCAGGCCCTCCTCACAAAGATTTGGTGGGGGGCGATGACGACAGACACAGCCATCTCCAAACTCGTGGTGTGTTTCTTCTGTCCACCACTCATCTGGACCAACCTCATAAAGTTCAGTGACGAGGAACTCGATAATCGTAATAGCCGCGAGCAGTTTGTGGAGCTGGACAGTCTGGATACAGAAAAGGCTTTACTGTTAACTGACGACGATGACCACATGGAGTCTTCACCTGGAGCTCCAGCAACTCAGAGCTGTGCCTCTGTCTGGTGGCGTTTCCTGCTCCGCCGCTGGCGTCGCTTCTGGAGTGCTGCTGTCACTGTGTTCCTCGGTAATGTCATCATGTACTTcgccttcctcttcctcttcaccTACGTGCTCCTGCTAGACTTCCGTCCGCCGCCTCCCCTTGGCCCTGGAGCCCACGAAATAATTCTCTACTTCTGGGTCTTCACCTTGGTGCTGGAGGAACTTCGACAGAGCTTCTTCACGGATGAAGAGATTAACATCTTGAAGAAGTTCAAACTCTATGTAGAGGACAACTGGAACAAGTGTGACATGGTTGCCATCTCGCTCTTTGTCGTTGGGGTTTCATGCAGGATGTCTAACAACACGTATGAGGCAGGAAGGACAGTTCTGGCGATAGACTTCATGGTATTCACTCTACGTCTGATCCACATCTTTGCCATTCATAAGCAGCTGGGACCCAAGATCATCATCGTGGAAAGAATGATGAAGGatgttttcttcttcctttttttcctgaGTGTGTGGATGATTGCGTACGGTGTTGCCACCCAGGCTCTTCTCCACCCCAATGACCCACGGATTGACTGGGTGTTTCGCAGAGCCTTGTACCGCCCATACCTGCACATTTTTGGCCAGATCCCCTTGGAGGAAATAGATGCTGCTCGCATGCCCGACATTAACTGCACCAGTGACTCAGAGGAGATTATCATGGGCCTACGGCCGCCCTGTCCCAACGTCTACGCCAACTGGCTGGTCATCCTGCTGCTGGTCATCTTCCTTCTTGTCACCAATGTCCTGCTGCTAAACCTACTCATTGCCATGTTCAGCTACACGTTCCAGGTAGTGCAAGAAAACGCGGACATCTTCTGGAAGTTCCAGAGGTACAACCTGATTGTAGAATACCACAGCCGTCCGGCATTAGCCCCAcccttcatcatcatcagccaCCTCTCTCAGCTTCTCCTCAGCCTGTTTAAACAGCCTGCGTCCAAGCAGGAGCACcttgAGAGGGAGCTGCCAGCGGGGCTAGACCAGAGGCTGATAACATGGGAGACGGTGCAAAAAGAGAACTACCTGACCAAACTGGAGCGCCAGCATTGGGAGAGCAGTGAAGAGAGACTTAAGAGTACCTCCTCAAAGGTTCAGAGCTTGCTGACGATTGTTGGTGGGTTCAAGGACCAAGAGAAACGAATGGCATCCATGGAGGCTCAGGTCAGATATTGTGGAGAGGTGTTGTCCTGGATGGCAGAGTGCTTTGCTCAAAGTACGCTGAAGTGCGGGAAAGAAGCTCCAACAGCTCCAACGTCTCTAACAGGCTGCCAGGCAAGCAGCACCAAGGACACACCTCAAAATCAACGGGAGAAAGAAGTCAAACAAGAAGAGGCTGAAGCCAGACCAGGTCCCTCAGGATATGGAGCTAACAAAAAATTCCCTTACATTGATGCATAAACGGTGATTTCAGTAACTGGTAGCACCCAGACAGCTATTTATGATAAAATATGTAAGACGTTCAGAATACGTTGAGGTATGATGTTGGTGCTGTTGGGGGAGAAGGGACATGGATCGCGTTGGGACTTTAAATTGACAAAATGATGTTGAATGTATTGACAGACGCCTCCTTGGTTTTTGAGTGTTGTTGCAGTTTGTTATATATCTTAAGAaacaaatttcactttatgaattTCATTCTTTTTACACGTtgaaggtccaatatgtaatactgacagctggTGTTTAAAAacgtta

Function

symbol description
trpm5 Predicted to enable calcium activated cation channel activity and ligand-gated calcium channel activity. Predicted to be involved in calcium ion transmembrane transport. Predicted to act upstream of or within cation transport; ion transmembrane transport; and sensory perception of taste. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in digestive system; gill; integument; keratinocyte; and taste bud. Orthologous to human TRPM5 (transient receptor potential cation channel subfamily M member 5).

NR:

description
transient receptor potential cation channel subfamily M member 5-like

GO: NA

KEGG:

id description
K04980 TRPM5; transient receptor potential cation channel subfamily M member 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039794175.1 True 4043 mRNA 0.52 26 14062036 14090460

Neighbor

gene id symbol gene type direction distance location
ttc17 ttc17,LOC103361721 coding downstream 13742 14017552 ~ 14048294 (-)
hsd17b12b hsd17b12,LOC103367509,LOC108234813,LOC106951467,LOC102212771 coding downstream 66721 13967714 ~ 13995315 (-)
LOC120555520 NA coding downstream 334566 13723593 ~ 13727470 (-)
chst1 chst1 coding downstream 655421 13402324 ~ 13406615 (-)
LOC120555522 NA coding downstream 767775 13285241 ~ 13294261 (-)
kcnq1.1 kcnq1,LOC101467915,LOC102292488,LOC102797067,LOC100697082 coding upstream 10669 14101129 ~ 14153448 (-)
lingo1b LOC103361724 coding upstream 135317 14225777 ~ 14250332 (-)
muc15 NA coding upstream 548526 14638986 ~ 14654184 (-)
madd madd coding upstream 649732 14740192 ~ 14804767 (-)
nr1h3 nr1h3,LOC102777562 coding upstream 720985 14811445 ~ 14828395 (-)
G27277 NA non-coding downstream 57425 13997113 ~ 14004611 (-)
G27279 NA non-coding downstream 59289 14001850 ~ 14002747 (-)
G27230 NA non-coding downstream 307962 13753706 ~ 13754074 (-)
G27211 LOC104946114,LOC100698156 non-coding downstream 341440 13719198 ~ 13720596 (-)
G27210 NA non-coding downstream 349768 13708919 ~ 13712268 (-)
G27295 NA non-coding upstream 77097 14167557 ~ 14167758 (-)
G27297 NA non-coding upstream 79153 14169613 ~ 14169839 (-)
G27301 NA non-coding upstream 89667 14180127 ~ 14180348 (-)
G27309 NA non-coding upstream 133876 14224336 ~ 14225278 (-)
G27322 NA non-coding upstream 437382 14527842 ~ 14528127 (-)
G27075 LOC104939823,LOC100707594 other downstream 966270 13069996 ~ 13095766 (-)
G26924 LOC108281047 other downstream 1757212 12304539 ~ 12304824 (-)
G26891 NA other downstream 2100264 11960701 ~ 11961772 (-)
LOC120555651 NA other downstream 2392767 11643231 ~ 11669269 (-)
mtfmt mtfmt,LOC102776665,LOC102776373 other downstream 2551736 11476506 ~ 11510300 (-)
G27321 NA other upstream 379298 14469758 ~ 14470345 (-)
LOC120556476 NA other upstream 487567 14578027 ~ 14580011 (-)
G27420 NA other upstream 752253 14842713 ~ 14843905 (-)
cfap70 LOC103368539,LOC102222702,LOC102790175,LOC102296598,LOC102204478,LOC104922799 other upstream 960202 15050662 ~ 15078830 (-)
LOC120556162 znf609 other upstream 1981109 16071569 ~ 16159882 (-)

Expression


Co-expression Network