vegfd (vegfd)


Basic Information

Item Value
gene id vegfd
gene name vegfd
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 18926038 ~ 18933824 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039794187.1
aaaaaaaaaagactggaacaaaaaagcaactaaaaagGCGTGCTTTGAGGCAGCAAGGCCAGTGGGAGAGACATAAAGGCAGAAGCCAGTCAGACATACTAGTTTCTCATAGCTTCTTCAGAATTAGCCCACATCTTAGTGGAAGGAATTGTGTGGCTGCTTTTGCACCTCAGGGCCTTTTTACACGGACAAACCACAGTAGGATCTGGAGAACTGAGGACTGACCGAAGGGAAGTTTAACCTACAGATATTGTCACCACTAAAATTAAGGGAAGTCAGCAGCCTTTTTTTCAGGAGGTGGGTATATAAAGAAGAAACCGAGCAATTTGTTCAGATCATCTAGCTGAACTATTCCACAGGCCTTCAATCCATTCTGACGTAAGAGAATGTGCTGAGAAGTCCTCAAGGGAATCGTGACTTTTTCTGAGGTCATTTTCAGCTTCTGACTCCTAGTAGCTTCGTTATTTAACGGGACACCTCCGGTTCTGCATCAAAGCTTCTGTTGTAAGAGGTGTCTGTTTTAAAGCATCTTTAACCTTCTTCATTTGGCTCGTGGGCATCTGGGTTGCTGTGACAGGTTACATCTGGcttatacacgcacacacacacacacacactcacactctttACTGTGCAGCTGGAGGATCTAGAGTTTGTGTTGCACATACCTGCActgagaggagtgtgtgtggtcTGAGGGACTCAGCTGTTCTGGGAAACCGAGTCGGAGAGGCAGCCAGCTCTAAGTGCTTTCTGCCAGAAGGAAAAGGAGATACGTTCATACTGCTGACTGCTTCTCAGAGACCGCAAGCATAGCCAAGGCATAATGATGACGATGAAGCGGACTCTGTGCAGAATCTCCTGCTTGGTGACTCTGGTGGTGGAGCTGAGCTGGATAAACGTGGGCCACAGCATgcacagagagggaggaagcAGGGTAATGAAGCAGTGGGAGAGGAAGGTGCGGTCAGCCTCCAGCTTAGATGAGCTGCTGATGCTTGCAGACTTTCCTGATTGGAAGTTGTGGAAGTGTCGCCTGAGACTGCAGCAGCCAGAGACCCTCTCTTCTCCACCTTCAGTTGGCTCACACCGCTCTACACGCTACGCTGCCGAATCTTACAGCCTGGAGATTCTTAAAGCCATAGATGAAGAATGGCAGCGCACTCAGTGCATGCCAAGGGAAACGTGTATCGACGTGGCCAAGGAGCTGGGCACCGACCCCTCAATGTTCTTCAAGCCACCTTGTGTCTCCGTCCACAGGTGCAGTGGCTGCTGCAATCAAGAGGGAGTCACTTGCAGAAACACAACGACAGTATATGTGAATAAAACTGTCCTTAGTGTCATTCCATTTAACTTTGTACCAGAGCCTGTGCTAATAAAAGTAGCTAATCATACAGAGTGCAGGTGCATGGAGCCCGCCATAATACGACGTAATGCTCAGCCTCACAGGAGCAGTAGCTGCTCTCCAATGGGCCAGCTGTCAGAGGCACAGGACTCCAGAAGACTTTGTGCCAGTGGGTTCATTTGGGATTGTTCAACTGACAGATGCATACCTTACCCTTCCAGTacaccagAGTTTCCACTTAGTTCATGGATGCCCGACTGTGAGATAGACGTTGAGCGCTGTGACTGTCTTCCGAGACCTGGGCCAACGCTGGAACCAAGACCGATCCAACGCTGTCATCTCAACTCCTCCATCTGTGCCCACAGGCATCAACGTTTTGATCAAGCCTCCTGCAGATGCAAATGGCCCAACTAGAACTCTGAGGAAATAACTGACGACAACCTGCTTGCCAAGGATGTTTGGAGGCAGAGAAAAAAGGCTCATAATTTATTTACAGTCCTATTTATGGCGATCACTTTAACTAATTAATATGATATTAACTCACATGACCAtgttaatagattttttttaacatgcttaCCTTTATGTTTCAATCAATTTGTAAAGTTTATGATTTGTACATTGTTCTTTGTGCACTGAA
>XM_039794188.1
catttaaaaaaaaaaaaaagactggaacaaaaaagcaactaaaaagGCGTGCTTTGAGGCAGCAAGGCCAGTGGGAGAGACATAAAGGCAGAAGCCAGTCAGACATACTAGTTTCTCATAGCTTCTTCAGAATTAGCCCACATCTTAGTGGAAGGAATTGTGTGGCTGCTTTTGCACCTCAGGGCCTTTTTACACGGACAAACCACAGTAGGATCTGGAGAACTGAGGACTGACCGAAGGGAAGTTTAACCTACAGATATTGTCACCACTAAAATTAAGGGAAGTCAGCAGCCTTTTTTTCAGGAGGTGGGTATATAAAGAAGAAACCGAGCAATTTGTTCAGATCATCTAGCTGAACTATTCCACAGGCCTTCAATCCATTCTGACGTAAGAGAATGTGCTGAGAAGTCCTCAAGGGAATCGTGACTTTTTCTGAGGTCATTTTCAGCTTCTGACTCCTAGTAGCTTCGTTATTTAACGGGACACCTCCGGTTCTGCATCAAAGCTTCTGTTGTAAGAGGTGTCTGTTTTAAAGCATCTTTAACCTTCTTCATTTGGCTCGTGGGCATCTGGGTTGCTGTGACAGGTTACATCTGGcttatacacgcacacacacacacacacactcacactctttACTGTGCAGCTGGAGGATCTAGAGTTTGTGTTGCACATACCTGCActgagaggagtgtgtgtggtcTGAGGGACTCAGCTGTTCTGGGAAACCGAGTCGGAGAGGCAGCCAGCTCTAAGTGCTTTCTGCCAGAAGGAAAAGGAGATACGTTCATACTGCTGACTGCTTCTCAGAGACCGCAAGCATAGCCAAGGCATAATGATGACGATGAAGCGGACTCTGTGCAGAATCTCCTGCTTGGTGACTCTGGTGGTGGAGCTGAGCTGGATAAACGTGGGCCACAGCATgcacagagagggaggaagcAGGGTAATGAAGCAGTGGGAGAGGAAGGTGCGGTCAGCCTCCAGCTTAGATGAGCTGCTGATGCTTGCAGACTTTCCTGATTGGAAGTTGTGGAAGTGTCGCCTGAGACTGCAGCAGCCAGAGACCCTCTCTTCTCCACCTTCAGTTGGCTCACACCGCTCTACACGCTACGCTGCCGAATCTTACAGCCTGGAGATTCTTAAAGCCATAGATGAAGAATGGCAGCGCACTCAGTGCATGCCAAGGGAAACGTGTATCGACGTGGCCAAGGAGCTGGGCACCGACCCCTCAATGTTCTTCAAGCCACCTTGTGTCTCCGTCCACAGGTGCAGTGGCTGCTGCAATCAAGAGGGAGTCACTTGCAGAAACACAACGACAGTATATGTGAATAAAACTGTCCTTAGTGTCATTCCATTTAACTTTGTACCAGAGCCTGTGCTAATAAAAGTAGCTAATCATACAGAGTGCAGGTGCATGGAGCCCGCCATAATACGACGTAATGCTCAGCCTCACAGGAGCACTGCTCTCCAATGGGCCAGCTGTCAGAGGCACAGGACTCCAGAAGACTTTGTGCCAGTGGGTTCATTTGGGATTGTTCAACTGACAGATGCATACCTTACCCTTCCAGTacaccagAGTTTCCACTTAGTTCATGGATGCCCGACTGTGAGATAGACGTTGAGCGCTGTGACTGTCTTCCGAGACCTGGGCCAACGCTGGAACCAAGACCGATCCAACGCTGTCATCTCAACTCCTCCATCTGTGCCCACAGGCATCAACGTTTTGATCAAGCCTC

Function

symbol description
vegfd Predicted to enable chemoattractant activity; growth factor activity; and vascular endothelial growth factor receptor 3 binding activity. Acts upstream of or within angiogenesis; blood circulation; and lymphangiogenesis. Predicted to be located in membrane. Predicted to be active in extracellular space. Is expressed in several structures, including pectoral fin; pectoral fin bud; post-vent region; spinal cord; and tail bud. Orthologous to human VEGFD (vascular endothelial growth factor D).

NR:

description
PREDICTED: vascular endothelial growth factor D isoform X2

GO: NA

KEGG:

id description
K05449 VEGFC_D; vascular endothelial growth factor C/D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039794187.1 True 1985 mRNA 0.47 8 18926047 18933824
XM_039794188.1 False 1739 mRNA 0.49 7 18926038 18931134

Neighbor

gene id symbol gene type direction distance location
pir pir coding upstream 410 18910086 ~ 18925628 (+)
zgc:113276 LOC104963547,LOC103365175 coding upstream 16761 18899447 ~ 18909277 (+)
ace2 ace2 coding upstream 36536 18875952 ~ 18889502 (+)
scml2 scml2 coding upstream 128255 18770382 ~ 18797783 (+)
rs1a rs1,LOC101067478 coding upstream 197316 18721369 ~ 18728722 (+)
LOC120555985 NA coding downstream 25145 18958969 ~ 18969478 (+)
LOC120555986 LOC103365180,LOC104967792 coding downstream 36762 18970586 ~ 18995278 (+)
LOC120556409 LOC104967794 coding downstream 65704 18999528 ~ 19008386 (+)
tmem39a tmem39a coding downstream 76653 19010477 ~ 19023972 (+)
LOC120555696 NA coding downstream 170442 19104266 ~ 19109063 (+)
LOC120556026 NA non-coding upstream 78632 18846269 ~ 18847406 (+)
G28195 homer2 non-coding upstream 310229 18607305 ~ 18615809 (+)
G28163 usp8,LOC102785891 non-coding upstream 480742 18444816 ~ 18445296 (+)
LOC120555993 NA non-coding upstream 744837 18004828 ~ 18181201 (+)
G28083 NA non-coding upstream 1006842 17918900 ~ 17919196 (+)
G28393 NA non-coding downstream 120300 19054124 ~ 19055004 (+)
G28394 NA non-coding downstream 123722 19057546 ~ 19057853 (+)
G28396 NA non-coding downstream 137996 19071820 ~ 19072036 (+)
LOC120555698 NA non-coding downstream 153371 19087195 ~ 19091823 (+)
G28398 NA non-coding downstream 160861 19094685 ~ 19094900 (+)
LOC120556478 LOC103360749,LOC104942123,LOC102301404 other upstream 350096 18561873 ~ 18575942 (+)
LOC120555788 NA other upstream 1182590 17724545 ~ 17743448 (+)
LOC120556001 rbpms2,LOC107381790,LOC103368877,LOC104957780 other upstream 3439587 15475147 ~ 15486451 (+)
LOC120556433 psma4,psa4,LOC106562664 other upstream 3479546 15441455 ~ 15446492 (+)
LOC120556271 tmem138,LOC104922799,LOC102296598,LOC102204478,LOC104956289,LOC103368539,LOC102790175,LOC102222702 other upstream 3872416 15047877 ~ 15053622 (+)
LOC120555697 NA other downstream 140484 19074308 ~ 19087064 (+)
G28581 NA other downstream 553422 19487246 ~ 19487533 (+)
ercc3 ercc3 other downstream 578532 19512356 ~ 19520218 (+)
LOC120555792 pcdh9,LOC102784100 other downstream 838295 19772119 ~ 19993954 (+)
G28770 NA other downstream 1777280 20711104 ~ 20761147 (+)

Expression


Co-expression Network