Gene
RNA
| Item | Value |
|---|---|
| gene id | trappc2l |
| gene name | trappc2l |
| gene type | coding |
| species | eurasian perch (Perca fluviatilis) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_053114.1 |
| NCBI id | CM020911.1 |
| chromosome length | 46923577 |
| location | 22539280 ~ 22542996 (+) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| symbol | description |
|---|---|
| trappc2l | Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in perinuclear region of cytoplasm. Predicted to be part of TRAPP complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human TRAPPC2L (trafficking protein particle complex subunit 2L). |
| description |
|---|
| PREDICTED: trafficking protein particle complex subunit 2-like protein |
| id | name | namespace |
|---|---|---|
| GO:0006888 | endoplasmic reticulum to Golgi vesicle-mediated transport | biological_process |
| GO:0005622 | intracellular anatomical structure | cellular_component |
| id | description |
|---|---|
| K20301 | TRAPPC2, TRS20; trafficking protein particle complex subunit 2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_039794238.1 | True | 598 | mRNA | 0.44 | 5 | 22539280 | 22542996 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| cmtm4 | cmtm4 | coding | upstream | 31725 | 22489512 ~ 22507555 (+) |
| dync1li2 | dync1li2 | coding | upstream | 50901 | 22471509 ~ 22488379 (+) |
| nae1 | nae1 | coding | upstream | 98907 | 22433511 ~ 22440373 (+) |
| cdh16 | cdh16 | coding | upstream | 131570 | 22369351 ~ 22407710 (+) |
| rrad | rrad | coding | upstream | 162140 | 22374134 ~ 22377140 (+) |
| trnag-ucc_7 | NA | coding | downstream | 4205 | 22547201 ~ 22547272 (+) |
| acsf3 | acsf3 | coding | downstream | 126908 | 22669904 ~ 22711934 (+) |
| cdh15 | cdh15 | coding | downstream | 170304 | 22713300 ~ 22751941 (+) |
| slc22a31 | slc22a31 | coding | downstream | 353346 | 22896342 ~ 22911278 (+) |
| sult5a1 | NA | coding | downstream | 380828 | 22923824 ~ 22929666 (+) |
| G29135 | galns | non-coding | upstream | 4412 | 22533942 ~ 22534868 (+) |
| G29101 | NA | non-coding | upstream | 131041 | 22407966 ~ 22408239 (+) |
| G29085 | NA | non-coding | upstream | 170777 | 22368129 ~ 22368503 (+) |
| LOC120556188 | NA | non-coding | upstream | 378385 | 22159570 ~ 22160895 (+) |
| G29005 | NA | non-coding | upstream | 409702 | 22128964 ~ 22129578 (+) |
| G29139 | NA | non-coding | downstream | 5704 | 22548700 ~ 22601559 (+) |
| G29176 | NA | non-coding | downstream | 209472 | 22752468 ~ 22753645 (+) |
| G29241 | ist1 | non-coding | downstream | 454706 | 22997702 ~ 23001049 (+) |
| G29243 | mphosph10 | non-coding | downstream | 461882 | 23004878 ~ 23007982 (+) |
| G29228 | LOC100136564,LOC104919244,LOC103365615 | non-coding | downstream | 473036 | 23016032 ~ 23019378 (+) |
| gpc5a | gpc5,LOC103365231 | other | upstream | 667255 | 21720034 ~ 21872025 (+) |
| dcun1d2b | dcun1d2,LOC102792160 | other | upstream | 935374 | 21596331 ~ 21603906 (+) |
| tpp2 | tpp2 | other | upstream | 976466 | 21525592 ~ 21562814 (+) |
| grk1a | grk1 | other | upstream | 1106133 | 21421110 ~ 21433147 (+) |
| G28826 | NA | other | upstream | 1135830 | 21396213 ~ 21403450 (+) |
| ankrd11 | ankrd11 | other | downstream | 221723 | 22764719 ~ 22895007 (+) |
| LOC120555548 | LOC103365626,LOC104942698 | other | downstream | 438787 | 22981783 ~ 22994164 (+) |
| G29292 | NA | other | downstream | 593736 | 23136732 ~ 23137027 (+) |
| igdcc3 | igdcc3 | other | downstream | 900153 | 23443149 ~ 23517263 (+) |
| G29433 | NA | other | downstream | 1184016 | 23727012 ~ 23732471 (+) |
