gtf2f2a (gtf2f2)


Basic Information

Item Value
gene id gtf2f2a
gene name gtf2f2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 19500529 ~ 19508532 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039794271.1
CGTATTTATTTTACGCATGCGTGTGGCGGTTGCATTTAGCCAGAGCCATTTAGCTAATCAGAAGCATCATTTTAAAACATGTCCGAGAAAGGAGAAGTGGATTTAACTGGTGCCAAGCAGAACACGGGTGTGTGGCTTGTAAAGGTGCCCAAATACCTCTCTCAGCAATGGGCAAAAGCAACTGGCAGAGGCGAGGTCGGGAAACTCCGAATCTGCAAGAAAGGAACCCAAGGAAAAGCAGAGGTGTCTTTCACTTTGAACGAAGAGCTGACCGTGATTGAGGGTATAGAAGACAAGACGGTGTCTGCGCCTCGCGAGCACCCGTTCACCATGCAGACAGTGGGAGGTCAGACGTTGGCGGTCTTCACAGAAACTTCATCAGGCCAGTTAGAAGAAAGATCTGATGGCAGCAGCTCAGTTTCGGGGGCGGGGGCAGGTCCAGATAAAATAGCCTTGGAGGGAGTGGTAGTGCAGAGAGCCGAGTGCAGACCCGCTGTTAGCGAAGGCTATATGAGGCTGAAAAGGTTACAAATTGAAGAGTTGGCCAAGCCAGTCAGGCTGTCCCAACAGTTGGACAAAGCTGTCACCAGCAACTACAAACCTGTGGCCAACCATACTTACAATCTTGAGTATGAGCGGAAAAAGAAGGAGGAGGGCAAGAGAGCAAGAGCTGACAAACAGCAGGTGCTGGACATGTTGTTCTCTGCTTTTGAGAAGCACCAGTACTACAACATCAAAGATCTGGTGGATATCACCAAACAGCCTGTGATTTACTTGAAGGAAATCTTGCGTGATATTGGCATCTACAATGTGAAGGGAACACACAAGAATACCTGGGAGCTCAAACCAGAATACCGACATTACCAAGGGGATGACAAGATTGATGAATAGTTTCGGACCCTCCCGAGGCCGATACCTTTTAATTTGATGGGGGGGGTGTAAGAGACCAGGCCTTGGTTGGACTTCTCTCCTGATTTCCTTACAATCAGGTCTTGAAGCACACTGGATGATGAGGCCACACAAAGGTTGCGTTTTACAGGGAGAAGTTTTATCTTCGTTATTTTGTAGGAGACAAGATGAGGCATTGGAAAACTGAAGTTTTGCACTCAGTCTGTTCCTGGTGTCTTCTGTCACAGCTCCAGCACACCCTTGAGGTCACAGGCCCCAGTATTTGAATTTGTCCTAACCCTCAGAGGCACAGGACATAACATTTTATGAAGTAAAAGATGCATTTGTAAACTTGTTCTTagcattattttaatttttaattaaagGATTCATTCTTGAAAAAATTCTGCACCCTGACTTGGAAAGACAAATTTCAGCCTGGACTTGGGATTGACAACATTTAAGACCTGTGCCATTGCTGTACTCGTTTGTCCTTCAGGTGCTTTAAACTTACATTTGATTTATGCAATAAATGTTTCAATAAA
>XM_039794272.1
CGTATTTATTTTACGCATGCGTGTGGCGGTTGCATTTAGCCAGAGCCATTTAGCTAATCAGAAGCATCATTTTAAAACATGTCCGAGAAAGGAGAAGTGGATTTAACTGGTGCCAAGCAGAACACGGGTGTGTGGCTTGTAAAGGTGCCCAAATACCTCTCTCAGCAATGGGCAAAAGCAACTGGCAGAGGCGAGGTCGGGAAACTCCGAATCTGCAAGAAAGGAACCCAAGGAAAAGCAGAGGTGTCTTTCACTTTGAACGAAGAGCTGACCGTGATTGAGGGTATAGAAGACAAGACGGTGTCTGCGCCTCGCGAGCACCCGTTCACCATGCAGACAGTGGGAGGTCAGACGTTGGCGGTCTTCACAGAAACTTCATCAGATAAAATAGCCTTGGAGGGAGTGGTAGTGCAGAGAGCCGAGTGCAGACCCGCTGTTAGCGAAGGCTATATGAGGCTGAAAAGGTTACAAATTGAAGAGTTGGCCAAGCCAGTCAGGCTGTCCCAACAGTTGGACAAAGCTGTCACCAGCAACTACAAACCTGTGGCCAACCATACTTACAATCTTGAGTATGAGCGGAAAAAGAAGGAGGAGGGCAAGAGAGCAAGAGCTGACAAACAGCAGGTGCTGGACATGTTGTTCTCTGCTTTTGAGAAGCACCAGTACTACAACATCAAAGATCTGGTGGATATCACCAAACAGCCTGTGATTTACTTGAAGGAAATCTTGCGTGATATTGGCATCTACAATGTGAAGGGAACACACAAGAATACCTGGGAGCTCAAACCAGAATACCGACATTACCAAGGGGATGACAAGATTGATGAATAGTTTCGGACCCTCCCGAGGCCGATACCTTTTAATTTGATGGGGGGGGTGTAAGAGACCAGGCCTTGGTTGGACTTCTCTCCTGATTTCCTTACAATCAGGTCTTGAAGCACACTGGATGATGAGGCCACACAAAGGTTGCGTTTTACAGGGAGAAGTTTTATCTTCGTTATTTTGTAGGAGACAAGATGAGGCATTGGAAAACTGAAGTTTTGCACTCAGTCTGTTCCTGGTGTCTTCTGTCACAGCTCCAGCACACCCTTGAGGTCACAGGCCCCAGTATTTGAATTTGTCCTAACCCTCAGAGGCACAGGACATAACATTTTATGAAGTAAAAGATGCATTTGTAAACTTGTTCTTagcattattttaatttttaattaaagGATTCATTCTTGAAAAAATTCTGCACCCTGACTTGGAAAGACAAATTTCAGCCTGGACTTGGGATTGACAACATTTAAGACCTGTGCCATTGCTGTACTCGTTTGTCCTTCAGGTGCTTTAAACTTACATTTGATTTATGCAATAAATGTTTCAATAAA

Function

symbol description
gtf2f2 Predicted to enable RNA polymerase II general transcription initiation factor activity. Involved in transcription by RNA polymerase II. Located in microtubule cytoskeleton and nucleoplasm. Part of transcription preinitiation complex.

NR:

description
PREDICTED: general transcription factor IIF subunit 2 isoform X1

GO:

id name namespace
GO:0006367 transcription initiation from RNA polymerase II promoter biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005674 transcription factor TFIIF complex cellular_component
GO:0005524 ATP binding molecular_function

KEGG:

id description
K03139 TFIIF2, GTF2F2, TFG2; transcription initiation factor TFIIF subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039794271.1 True 1433 mRNA 0.46 9 19500529 19508532
XM_039794272.1 False 1373 mRNA 0.45 8 19500529 19508532

Neighbor

gene id symbol gene type direction distance location
LOC120555523 LOC103359460,LOC102291763,LOC102215599,LOC101468151 coding downstream 5116 19459171 ~ 19495413 (-)
marchf7 LOC104963329 coding downstream 142162 19343424 ~ 19358367 (-)
psmd14 psmd14,psde,LOC107563735 coding downstream 267689 19227639 ~ 19232840 (-)
fn1b fn1,LOC103359471 coding downstream 292886 19182528 ~ 19207643 (-)
LOC120555913 prss23,LOC103365183,LOC104967790 coding downstream 471292 19025898 ~ 19029237 (-)
gpalpp1 gpalpp1 coding upstream 153 19508685 ~ 19511713 (-)
LOC120556479 NA coding upstream 745181 20253713 ~ 20279186 (-)
tdrd3 tdrd3 coding upstream 967095 20475627 ~ 20497725 (-)
pcdh17 LOC104926281,LOC104949434 coding upstream 1412412 20920944 ~ 20990225 (-)
LOC120556394 LOC104958904,LOC103352838,LOC105933796,LOC103378628,LOC107088303,LOC107687747 coding upstream 1843999 21352531 ~ 21362696 (-)
G28558 baz2b non-coding downstream 64816 19420548 ~ 19435713 (-)
G28557 NA non-coding downstream 82094 19417412 ~ 19418435 (-)
G28552 NA non-coding downstream 91027 19351997 ~ 19409502 (-)
G28545 NA non-coding downstream 169014 19330490 ~ 19331515 (-)
G28516 NA non-coding downstream 206219 19292974 ~ 19294310 (-)
G28623 LOC103359454,LOC100700192 non-coding upstream 21040 19529572 ~ 19531634 (-)
G28632 LOC102784954 non-coding upstream 41595 19550127 ~ 19551890 (-)
G28637 NA non-coding upstream 49146 19557678 ~ 19559314 (-)
LOC120556360 NA non-coding upstream 65787 19574319 ~ 19600624 (-)
G28670 NA non-coding upstream 415203 19923735 ~ 19923998 (-)
LOC120555836 pcnp other downstream 374118 19123541 ~ 19126411 (-)
LOC120555695 NA other downstream 430533 19054091 ~ 19069996 (-)
G28345 NA other downstream 780510 18719372 ~ 18720019 (-)
LOC120556268 btbd1 other downstream 841870 18650029 ~ 18658659 (-)
G28269 mapk6 other downstream 1080030 18416069 ~ 18420499 (-)
LOC120555658 NA other upstream 2071436 21579968 ~ 21583558 (-)
G28933 NA other upstream 2072510 21581042 ~ 21583498 (-)
gpc6a LOC101477426,LOC100710496,LOC102798074,LOC103365236,LOC102217784 other upstream 2378056 21886588 ~ 22051625 (-)
LOC120555944 LOC103365297,LOC100709700,LOC102795695,LOC102312860 other upstream 2762338 22270870 ~ 22336817 (-)
cbfa2t3 cbfa2t3,LOC102789151 other upstream 3040168 22548700 ~ 22601557 (-)

Expression


Co-expression Network