LOC120555531 (LOC106909328)


Basic Information

Item Value
gene id LOC120555531
gene name LOC106909328
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 6038425 ~ 6050689 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039794276.1
AAACTCTCACTTGGTAACAGCGAGACACTTGTCTCTTCGGTCTTTCAGGTCTGTTGCAGCCATGTTGGTTTTCTCCTGGTCTCTCGTGACCCTGCTGCTGGTGTCCTCTTCCTGGGCTGAGGAAGATGTTGCCACCCTTGAGGACTTTTCAAAGGAGCTGCCTGTTGGTCAGCTGCTGGAGAGAGCCAACAGAGACCGCACCCCTGACTTGGACGAGCCCACCCTGATTGGAGGAGACATCGCTGTGAAGCCAGGGGCCGACAGAAACGCTGACCCCTGCACCTCTACAGGCTGCCTGTGGCTAAAGAATGCCGATGGGAATGTCTACATTCCCTACTACATTTCCAACCAATACTCCTCCCGCGAAGCGGCCATCATCACTCGTGGATTGGAGTCTTTCTCTTCAGTTTCCTGCATCCGTTTCAGACCCTACCAGAACGGTGATCATGAGTGGCTGAGCATCGAGTCCAGGAACGGCTGCTACTCCTACGTGGGTCGTCAGGGTGGTGCTCAGACTGTGTCTCTGGCCCGCAGTGGATGTCTGTACCACAGCACCGTCCAGCACGAGCTGCTCCACGCCCTCGGCTTCAACCATGAACAGACCCGCTCCGACAGGGACAGCTACATCAAGGTGTACTGGGAAAACATCCAGGATGGAATGTCGTACAACTTCGACATAATCAACACTCTGAACCAGGGAACTCCTTATGACTACAACTCTGTCATGCAATATGAGAAGTACGCCTTCTCCAAGAACAACCGCCCCACTATGATGCCCATTCCCGACCCTAACGTATCCTTCGGCCAGGCCACCCAGATGAGTAGGAATGACATTGATAGGCTGAACAGGCTGTACCAGTGCTAAACTGCgcgtgacctttgacctggcGCCCTGATGACATCAGAGCGTGCCGATGAAGCAGATTGAGGGTTTTGGGTGGATGGCAGTTTGGGTTGCCCTTTAACAATAAATCTGTAACTTCATAAGCATTAAACACTGCTTACCGCTGCACTGTTTCATGAAAATGGCAAAGACCATAGGCACGCTGTAGATTCTGGGGATGTTAATGAGACACATTTGAAAGATCATCCgattttattttcatatcacataaaaaaaaatcaatcatcaCAGTAGTGTAAGTAGTTTGATGGCTTCTGATCAGAAAATAAAGCAATTTCCCTTGCAGTATT
>XM_039794277.1
CATTTAAAGCCTGAGTCTGCATGGGACATTGGCATTTTGCATTCAGAGTCTGTTGCAGCCATGTTGGTTTTCTCCTGGTCTCTCGTGACCCTGCTGCTGGTGTCCTCTTCCTGGGCTGAGGAAGATGTTGCCACCCTTGAGGACTTTTCAAAGGAGCTGCCTGTTGGTCAGCTGCTGGAGAGAGCCAACAGAGACCGCACCCCTGACTTGGACGAGCCCACCCTGATTGGAGGAGACATCGCTGTGAAGCCAGGGGCCGACAGAAACGCTGACCCCTGCACCTCTACAGGCTGCCTGTGGCTAAAGAATGCCGATGGGAATGTCTACATTCCCTACTACATTTCCAACCAATACTCCTCCCGCGAAGCGGCCATCATCACTCGTGGATTGGAGTCTTTCTCTTCAGTTTCCTGCATCCGTTTCAGACCCTACCAGAACGGTGATCATGAGTGGCTGAGCATCGAGTCCAGGAACGGCTGCTACTCCTACGTGGGTCGTCAGGGTGGTGCTCAGACTGTGTCTCTGGCCCGCAGTGGATGTCTGTACCACAGCACCGTCCAGCACGAGCTGCTCCACGCCCTCGGCTTCAACCATGAACAGACCCGCTCCGACAGGGACAGCTACATCAAGGTGTACTGGGAAAACATCCAGGATGGAATGTCGTACAACTTCGACATAATCAACACTCTGAACCAGGGAACTCCTTATGACTACAACTCTGTCATGCAATATGAGAAGTACGCCTTCTCCAAGAACAACCGCCCCACTATGATGCCCATTCCCGACCCTAACGTATCCTTCGGCCAGGCCACCCAGATGAGTAGGAATGACATTGATAGGCTGAACAGGCTGTACCAGTGCTAAACTGCgcgtgacctttgacctggcGCCCTGATGACATCAGAGCGTGCCGATGAAGCAGATTGAGGGTTTTGGGTGGATGGCAGTTTGGGTTGCCCTTTAACAATAAATCTGTAACTTCATAAGCATTAAACACTGCTTACCGCTGCACTGTTTCATGAAAATGGCAAAGACCATAGGCACGCTGTAGATTCTGGGGATGTTAATGAGACACATTTGAAAGATCATCCgattttattttcatatcacataaaaaaaaatcaatcatcaCAGTAGTGTAAGTAGTTTGATGGCTTCTGATCAGAAAATAAAGCAATTTCCCTTGCAGTATT

Function

NR:

description
PREDICTED: low choriolytic enzyme-like

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08076 E3.4.24.21; astacin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039794276.1 True 1194 mRNA 0.50 10 6038425 6050689
XM_039794277.1 False 1193 mRNA 0.50 10 6038425 6050582

Neighbor

gene id symbol gene type direction distance location
si:ch211-260e23.9 LOC104921431 coding downstream 375171 5653454 ~ 5663254 (-)
ccne1 ccne1 coding downstream 395021 5630622 ~ 5643404 (-)
znf536 znf536,LOC102211462 coding downstream 694217 5058534 ~ 5344208 (-)
znf507 NA coding downstream 1663127 4351498 ~ 4375298 (-)
dpy19l3 dpy19l3 coding downstream 1704905 4265244 ~ 4333520 (-)
LOC120555530 NA coding upstream 9929 6060618 ~ 6067226 (-)
LOC120555529 NA coding upstream 19911 6070600 ~ 6079167 (-)
LOC120555532 NA coding upstream 63522 6114211 ~ 6126128 (-)
LOC120555533 mnep,LOC103369663 coding upstream 94740 6145429 ~ 6153413 (-)
LOC120555536 NA coding upstream 132943 6183632 ~ 6193536 (-)
G25674 NA non-coding downstream 132758 5905356 ~ 5905667 (-)
G25672 NA non-coding downstream 153264 5884844 ~ 5885161 (-)
G25667 NA non-coding downstream 160407 5876253 ~ 5878018 (-)
G25646 NA non-coding downstream 223741 5814479 ~ 5814684 (-)
G25644 NA non-coding downstream 231327 5800797 ~ 5807098 (-)
LOC120555539 NA non-coding upstream 72358 6123047 ~ 6125990 (-)
LOC120555540 LOC107712283,LOC107746645,LOC107663761,LOC107662224 non-coding upstream 159205 6209894 ~ 6211078 (-)
G25759 NA non-coding upstream 202634 6253323 ~ 6311134 (-)
G25769 NA non-coding upstream 263294 6313983 ~ 6314207 (-)
G25795 NA non-coding upstream 355699 6406388 ~ 6406597 (-)
LOC120556425 ap2a2,LOC104921433,LOC104965011 other downstream 320992 5680042 ~ 5717433 (-)
G25228 NA other downstream 3761334 2275475 ~ 2277091 (-)
cep89 NA other downstream 4297586 1664770 ~ 1740839 (-)
LOC120556047 abcc12,LOC102304683,LOC101479372,LOC102203605 other downstream 4396077 1587544 ~ 1642348 (-)
LOC120556048 abcc12,LOC101479372,LOC101076737,LOC102203605,LOC100701509,LOC102304683 other downstream 4482779 1510165 ~ 1555646 (-)
LOC120555534 LOC103369663 other upstream 105533 6156222 ~ 6167529 (-)
ankdd1a ankdd1a other upstream 272588 6323277 ~ 6346561 (-)
pop4 pop4,LOC105418436,LOC104960843 other upstream 458570 6509259 ~ 6524355 (-)
tpcn2 tpcn2 other upstream 483353 6534042 ~ 6590639 (-)
dok4 dok4,LOC102198948,LOC100694825,LOC102775855 other upstream 591475 6642164 ~ 6693331 (-)

Expression


Co-expression Network