LOC120555534 (LOC103369663)


Basic Information

Item Value
gene id LOC120555534
gene name LOC103369663
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 6156222 ~ 6167529 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039794281.1
GTTCTTTCttagtctgctgctgctgtcctatAACCATGATGCTCCAGGCGGCTGTGCTCAGtgtcctcttcttctctttccacAGTTTTACTACACAGgCTTCCTTTGAAAAGTGTGAGGAGAACTCTGGCAACACCATTGAAGATGACGATTTCAGTGTGTCCACGCTGTTGGAGAAGGCCAATGTTAATCTTGGAAAGAACTTTGATGACCCTCTGGTGTTATTTGGAGACATAGCAGTGCCAACAGGTCTACAGAACGCTGATCCCTGCACAGCACGAGGCTGCCTGTGGCCTAAAGCCACCGACGGCAATGTCTACGTACCCTACCGCATCTCAGACGAGTACTccacaagagagagagaaaccataGTCCAAGGCCTGCGGTCATTTGCTGAGTCCACTTGCATCCGCTTCACCCCCTTGACTAACGGACAGGAGGACTTTATTGACATCCAGTCTCGCGAAGGGTGTTACTCATTTGTTGGGCGTCGTGGTAATGGCCAAGTAGTGTCTTTGAAACGTCCGGGCTGTGTTTACCACCAGGTCATCCAACACGAGCTGCTCCACGCCCTGGGCTTCAACCATGAACAGACTCGGTCCGACAGGGACCAGCATGTTCGCATCTTGCTGGAGAACATCGAGCCTGGATTGGAGTTCGCTTTCAGGAAGATCGAAACAAGGAACCTTGGCACTCCCTATGACTACGGCTCTGTCATGCAATACGGAAGGTTTGCCTTCTCTAAGAACTGTCAGCCAACCATCATTCCCATCCCCGACAACAATGTACCCATTGGCCGAGCCACCCAGATGAGTCCTACTGACATCCTTCGGGTGAACCGCCTGTATGGCTGCAAATTGACTGCTTCCAGACGTGACCTGAAACCTGTGCAAAGAAAGCACTTCCTCTAGAAATGAAAgAAATCCAGAGCAAATGAGGCAAACTGATGAAACGTTGTACAAGCAAAACCAGAAATGCATATTGTGCTTAACGAATGTGCTTTTATTCAGAATTTGAACAAATTAGCTTGCATGCTGTCCTAATGAGAAATGAAGTGTCCACTGATATCATCACACAATAACTGCTTGTGAGCttgattatatattataaataaaccATGCTTATTCAATTCATAACCTCA
>XR_005638726.1
GTTCTTTCttagtctgctgctgctgtcctatAACCATGATGCTCCAGGCGGCTGTGCTCAGtgtcctcttcttctctttccacAGTTTTACTACACAGgCTTCCTTTGAAAAGTGTGAGGAGAACTCTGGCAACACCATTGAAGATGACGATTTCAGTGTGTCCACGCTGTTGGAGAAGGCCAATGTTAATCTTGGAAAGAACTTTGATGACCCTCTGGTGTTATTTGGAGACATAGCAGTGCCAACAGGTCTACAGAACGCTGATCCCTGCACAGCACGAGGCTGCCTGTGGCCTAAAGCCACCGACGGCAATGTCTACGTACCCTACCGCATCTCAGACGAGTACTccacaagagagagagaaaccataGTCCAAGGCCTGCGGTCATTTGCTGAGTCCACTTGCATCCGCTTCACCCCCTTGACTAACGGACAGGAGGACTTTATTGACATCCAGTCTCGCGAAGGGTCATCCAACACGAGCTGCTCCACGCCCTGGGCTTCAACCATGAACAGACTCGGTCCGACAGGGACCAGCATGTTCGCATCTTGCTGGAGAACATCGAGCCTGGATTGGAGTTCGCTTTCAGGAAGATCGAAACAAGGAACCTTGGCACTCCCTATGACTACGGCTCTGTCATGCAATACGGAAGGTTTGCCTTCTCTAAGAACTGTCAGCCAACCATCATTCCCATCCCCGACAACAATGTACCCATTGGCCGAGCCACCCAGATGAGTCCTACTGACATCCTTCGGGTGAACCGCCTGTATGGCTGCAAATTGACTGCTTCCAGACGTGACCTGAAACCTGTGCAAAGAAAGCACTTCCTCTAGAAATGAAAgAAATCCAGAGCAAATGAGGCAAACTGATGAAACGTTGTACAAGCAAAACCAGAAATGCATATTGTGCTTAACGAATGTGCTTTTATTCAGAATTTGAACAAATTAGCTTGCATGCTGTCCTAATGAGAAATGAAGTGTCCACTGATATCATCACACAATAACTGCTTGTGAGCttgattatatattataaataaaccATGCTTATTCAATTCATAACCTCA

Function

NR:

description
PREDICTED: high choriolytic enzyme 1-like

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08076 E3.4.24.21; astacin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039794281.1 True 1141 mRNA 0.48 10 6156222 6167529
XR_005638726.1 False 1065 transcript 0.47 10 6156222 6167529

Neighbor

gene id symbol gene type direction distance location
LOC120555533 mnep,LOC103369663 coding downstream 2809 6145429 ~ 6153413 (-)
LOC120555532 NA coding downstream 30094 6114211 ~ 6126128 (-)
LOC120555529 NA coding downstream 77055 6070600 ~ 6079167 (-)
LOC120555530 NA coding downstream 88996 6060618 ~ 6067226 (-)
LOC120555531 LOC106909328 coding downstream 105533 6038425 ~ 6050689 (-)
LOC120555536 NA coding upstream 16103 6183632 ~ 6193536 (-)
LOC120555535 NA coding upstream 66651 6234180 ~ 6241650 (-)
LOC120555542 NA coding upstream 110608 6278137 ~ 6281524 (-)
znf414 NA coding upstream 147981 6315510 ~ 6321567 (-)
plekho2 plekho2,LOC102775773 coding upstream 179660 6347189 ~ 6379078 (-)
LOC120555539 NA non-coding downstream 30232 6123047 ~ 6125990 (-)
G25674 NA non-coding downstream 250555 5905356 ~ 5905667 (-)
G25672 NA non-coding downstream 271061 5884844 ~ 5885161 (-)
G25667 NA non-coding downstream 278204 5876253 ~ 5878018 (-)
G25646 NA non-coding downstream 341538 5814479 ~ 5814684 (-)
LOC120555540 LOC107712283,LOC107746645,LOC107663761,LOC107662224 non-coding upstream 42365 6209894 ~ 6211078 (-)
G25759 NA non-coding upstream 85794 6253323 ~ 6311134 (-)
G25769 NA non-coding upstream 146454 6313983 ~ 6314207 (-)
G25795 NA non-coding upstream 238859 6406388 ~ 6406597 (-)
G25828 NA non-coding upstream 362638 6530167 ~ 6531894 (-)
LOC120556425 ap2a2,LOC104921433,LOC104965011 other downstream 438789 5680042 ~ 5717433 (-)
G25228 NA other downstream 3879131 2275475 ~ 2277091 (-)
cep89 NA other downstream 4415383 1664770 ~ 1740839 (-)
LOC120556047 abcc12,LOC102304683,LOC101479372,LOC102203605 other downstream 4513874 1587544 ~ 1642348 (-)
LOC120556048 abcc12,LOC101479372,LOC101076737,LOC102203605,LOC100701509,LOC102304683 other downstream 4600576 1510165 ~ 1555646 (-)
ankdd1a ankdd1a other upstream 155748 6323277 ~ 6346561 (-)
pop4 pop4,LOC105418436,LOC104960843 other upstream 341730 6509259 ~ 6524355 (-)
tpcn2 tpcn2 other upstream 366513 6534042 ~ 6590639 (-)
dok4 dok4,LOC102198948,LOC100694825,LOC102775855 other upstream 474635 6642164 ~ 6693331 (-)
lmnl3 LOC104943683 other upstream 1163179 7330708 ~ 7344756 (-)

Expression


Co-expression Network