atic (atic,LOC103365192,LOC102792413)


Basic Information

Item Value
gene id atic
gene name atic,LOC103365192,LOC102792413
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 19174192 ~ 19181908 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039794307.1
TAGTTTTCAAGCACACATGAGGCAATGAAAAAATTGTAAATTTGTCTCAGCCACTGCCTTCCTCCTCCACAATCTTACTCTGCAGAGTTTGCTTGAGTGAAGACTGAAGAGAAGCCGTCTTTACGCCTACAGAGACTGCAGACTACTGTGACTGAGAACATGGCATCCGCAGAGCTTGCACTTTTGAGTGTGTCAGACAAGACTGGACTGGTGGACTTTGCCAAAAAGCTGGTGGATGTTGGACTGTCTCTGGTCGCTTCAGGTGGCACGGCCAAAGCCCTGCGTGATGCTGGGCTGGCTGTCAGggatgTGTCTGAGCTGACTGGACACCCAGAGATGCTGGGAGGCAGAGTGAAGACCCTTCATCCTGCTGTCCATGGAGGCATCCTGGCCAGGAAATCCCCCACTGACACCGCAGACATGGAGAAGCTGGGCTACAGCCTGGTCCGAGTGGTGGTGTGCAACCTTTACCCATTTGTGAAGACCATCTCTAACCCGAGTGTTACGATCGAAAATGCGGTGGAGCAGATAGATATCGGTGGCGTAACTCTGTTAAGAGCAGCGGCCAAAAATCATGCTCGGGTCACTGTAGTGTGCGATCCTGCTGACTATTCGCTGGTTGCCAAGGAGATGGCGAGTTCAGGAGACAAAGATACAACTGTAGAAACACGCAGGACTCTGGCCCTCCAAGCCTTCACACACACCGCACAGTATGACGAGGCCATATCGGACTACTTTCGTGGACAGTACAGCCGAGGTGTTTCCCAGCTGCCTCTGCGCTACGGCATGAACCCTCACCAAGCACCCGCCCAACTCTACACTCTGCGCCCAGCCCTCCCCCTCAAAGTTGTCAACGGTTCCCCCGGCTTCATCAACCTGTGCGATGCTCTGAACGCCTGGCAGCTGGTCCGAGAGTTAAAGAGCGCCCTGGGCATGGCTGCTGCCACCTCCTTCAAACACGTCAGCCCTGCTGGAGCTGCAGTAGGAGTTCCTCTGACTGAGGAAGAAGCCAGAGTGTGCATGGTGCATGACATGCTGAAGGATCTCACCCCGCTGGCCACGGCCTACGCCAGGGCAAGGGGTTCAGACAGGATGTCTTCTTTTGGAGACTTCATTGCTGTGTCAGATGTTTGTGACGTTCCCACCGCCAGGATTATATCAAGAGAGGTGTCCGATGGTATCATTGCTCCTGGTTATGACGAGGAGGCACTCAAGATCCTTTCTAAGAAGAAGAATGGCAACTACTGTGTGCTTCAGATGGATCCCGACTACGAGCCTGATGAGGCGGAGGTGAGAGTGCTGTTTGGTCTCTATCTCAAACAAAAGAGGAATGGAGTGCTTATCAATAAGGAGTTCTTCAGCAACGTCGTTTCCAAGGGATCGCTCTCAGAGGAAGCTGTGCGTGACCTCGCTGTGGCCACCATCGCTGTCAAGTACACTCAGTCCAACTCTGTCTGCTACGCTAAAAATGGACAGGTTGTTGGTATCGGAGCGGGTCAGCAGTCTCGTATCCACTGCACACGCCTGGCAGGTGACAAAGCTGATAACTGGTGGCTGAGACACCACCCTCGTGTCCTGAACATGAAGTTTCGCAGTGGTGTGAAGCGAGCGGAGATGGCCAACGCAATCGACCAGTACGTCAGCGACACCATTGGAGAGGGCCCAGACTTTGCAGTTTGGAAGTCCATGTACGAAGAGGTGCCCGAGCCTCTGTCAGAGACCGAAAAGACCAACTGGATCAGCTCCCTGGAGGCCGTGGCCGTCAGCTCTGACGCCTTCTTCCCCTTCAGAGATAACATAGATCGTGCCAAACGGagTGGTGTTAAGTACATCGCAGCTCCGGCTGGCTCTGCTGCTGACGAGGTTGTGATTAAGGCCTGTAACGAGCAGGGCATCACTCTGGTGCACACCAACCTGCGGCTCTTCCACCACTGAACACCTTCTGCAGGTGTTCTTCGAACTCAACTCACAGTTTTGCAACATTAGAGTCAAGTTTGTTTTCTAACATTGTTGATACTCAAAACATTCCTTCACCATGCTCAAGTGTAGAGGTCACAAATGCACTGTTTGTAACACATTAACTGCATTCCTTACTTGTGATCCTAacattagagagagagatacagttACTGTTAATCTTCATTCCAGGTCAGTTGTTTATTTGGTGTGAAATAAATACTGTTAATGACA

Function

symbol description
atic Predicted to enable IMP cyclohydrolase activity and phosphoribosylaminoimidazolecarboxamide formyltransferase activity. Predicted to be involved in 'de novo' IMP biosynthetic process. Predicted to act upstream of or within purine nucleotide biosynthetic process. Predicted to be active in cytosol. Is expressed in several structures, including digestive system; immature eye; nervous system; neural crest; and yolk. Human ortholog(s) of this gene implicated in purine-pyrimidine metabolic disorder. Orthologous to human ATIC (5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase).

NR:

description
PREDICTED: bifunctional purine biosynthesis protein PURH-like

GO:

id name namespace
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0003937 IMP cyclohydrolase activity molecular_function
GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity molecular_function

KEGG:

id description
K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039794307.1 True 2190 mRNA 0.52 14 19174192 19181908

Neighbor

gene id symbol gene type direction distance location
mnx2b LOC103365191,LOC104967070 coding upstream 5379 19164594 ~ 19168813 (+)
stk16 stk16 coding upstream 41380 19126880 ~ 19132812 (+)
LOC120555834 NA coding upstream 50652 19113966 ~ 19123540 (+)
LOC120555696 NA coding upstream 65129 19104266 ~ 19109063 (+)
tmem39a tmem39a coding upstream 150220 19010477 ~ 19023972 (+)
rbms1a LOC104918252,LOC103359468,LOC103143540 coding downstream 55337 19237245 ~ 19256129 (+)
itgb6 itgb6 coding downstream 79383 19261291 ~ 19275805 (+)
pla2r1 pla2r1 coding downstream 95245 19277153 ~ 19305912 (+)
ly75 NA coding downstream 126430 19308338 ~ 19342577 (+)
baz2ba baz2b coding downstream 192073 19373981 ~ 19444669 (+)
G28465 NA non-coding upstream 17379 19156597 ~ 19156813 (+)
G28409 NA non-coding upstream 62505 19109918 ~ 19111687 (+)
G28408 NA non-coding upstream 70536 19103360 ~ 19103656 (+)
G28407 NA non-coding upstream 71117 19102717 ~ 19103075 (+)
G28406 NA non-coding upstream 72403 19101053 ~ 19101789 (+)
G28473 LOC103359471 non-coding downstream 8210 19190118 ~ 19191162 (+)
G28474 LOC103359471 non-coding downstream 9864 19191772 ~ 19193265 (+)
G28479 LOC103359471 non-coding downstream 14838 19196746 ~ 19198227 (+)
G28492 psmd14,LOC107563735 non-coding downstream 48047 19229955 ~ 19230628 (+)
G28526 NA non-coding downstream 141124 19323032 ~ 19344125 (+)
LOC120555697 NA other upstream 87128 19074308 ~ 19087064 (+)
LOC120556478 LOC103360749,LOC104942123,LOC102301404 other upstream 598250 18561873 ~ 18575942 (+)
LOC120555788 NA other upstream 1430744 17724545 ~ 17743448 (+)
LOC120556001 rbpms2,LOC107381790,LOC103368877,LOC104957780 other upstream 3687741 15475147 ~ 15486451 (+)
LOC120556433 psma4,psa4,LOC106562664 other upstream 3727700 15441455 ~ 15446492 (+)
G28581 NA other downstream 305338 19487246 ~ 19487533 (+)
ercc3 ercc3 other downstream 330448 19512356 ~ 19520218 (+)
LOC120555792 pcdh9,LOC102784100 other downstream 590211 19772119 ~ 19993954 (+)
G28770 NA other downstream 1529196 20711104 ~ 20761147 (+)
G28826 NA other downstream 2214305 21396213 ~ 21403450 (+)

Expression


Co-expression Network