rab27a (rab27a)


Basic Information

Item Value
gene id rab27a
gene name rab27a
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 27410828 ~ 27425702 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039794360.1
gcttagcttagctgtGAGTAATGAAACGGCTGTTGGCTCCGGGAGGAGGAGTTGTTTCTCAACAGCCACGGTAAGTAAATGAGGTGTCCAGTGTTAATGAAGCTGGTCTCATGTCAACTAATGGCCCAGAGTCAACGGAGAAAGTAAAGTTATCGTTTATTCACCTCTCAGTGAAGACTTAAACGTTCACTTGTAAACTACTACTTTACACCAAGACACAGTGCGCAGCAACGCCCAGGGGCTGaaATTAAGCGCTCACTATGTCTGATGGGGACTATGATTACCTCATCAAATTCCTAGCGCTAGGTGACTCTGGTGTGGGAAAGACGAGCTTCCTCTACCAATACACAGATGGCAAGTTTCACTCCAAGTTCATTACTACAGTTGGAATAGACTTCAGAGAAAAAAGAGTGGCATACAAATCAACGAATCCAGATGGATCTTCAGGTAGAGGACAGAAGATCCACATGCAGCTGTGGGACACTGCAGGACAGGAGAGGTTTCGGAGTTTGACGACCGCGTTCTTTAGAGATGCAATGGGTTTCCTCCTCCTGTTTGACCTCACAAATGAACAAAGTTTCCTCAACGTCAGAAACTGGATGAGTCAGTTACAGATTCACGCATACTGCGAAAGTCCAGACGTTGTTTTGTGCGGTAACAAATGTGACCTGTCAGATCAGAGAGCAGTCAGTGAAGAAGAGGCCCGTGAGCTGGCAGAGAAGTACGGAATCCCATACTTTGAGACAAGTGCTGCAAACGGGCAGAACGTCAACAAGGCTGTGGACGTCCTGCTGGATCTTATCATGAAGAGGATGGAACGATGTGTAGACAAGTCCTGGATCCCTGATGGGACCGTCAGAGTTAATGGACCCACCAACCCAGATATCTCAGAGGGCTCTGATGGGAGCAAATGTGCATGTTAGAATGAATGATGATGGTTTCACATCTATGCCCGTAATACTGAAACAAAATAGGAAGGCATCCAAGGTTAACCgtggagtatatatatatatatttactgatAAACTTTCATTGACATGCTGTATTATTTGTCTGTGAAGAGATAAGTGCTTTTTGAATGTAGGTATTTTATTTGAATTCATATAATGGGTCTTTTGACTAATTAATTCATATTGGGGATATTTATTCTTATGACGTCTTGCTGAAATGTCCAACTTTAGTCATCAGTCTGATATGCTGATCATACTTAGGGTCATATGAACGTTGTGCTCAAAGTCGCAGCAAAGAGTGCTGCCCTGCCAGGTGTGCTATAGATATACTGTTAATAATCTTTACTTGCTGTAAAGTTAGCGTAGATTCACACTGCAATTAAGTATGTTTCTCTTTGCACAGTCAGATACATGTTGACTGTGATACCTGCAGTCATGGTTTAATGATGGAGATAAATTTGCCAAGAAATTTACTTTTAGGAAACTTTAGTTACATACTATTGATGCTCTGCTGAATACTGCAATCTCATTGTTGCTTACAATGTTTGCACTTATTTGTCTCCAAAACGCAAATTATAGAATACGGTCTGGCCATGTCATTGACACTTCATTATATACAGGGACATGTTTGGCCAATAATTACAAACATTGGTGCTCAGTAGTTTGATAAAAGGAATAAATATGTCAAAGTAAAACCTTAGCAGGAACTCAGGTAATTCAGGTTGTTTATCCTGCCGTATGATGGACCCatgcaattttttattttttattccctCAATATTATTAGAGAAAGAAATATAAATGCAAAATCTTACTTTAGCTTTTGTAAACATTAAGTAGCACCAGCTGGTAAAGCTGACCCTCAGTCCCCTGTATAGCACATTTTTATCATTATTCACCTGTGACAATGCCTtcagttttaaaatgtacaTGTTTTAAAGTATACAGGAGAGATCCTAGATACTCATATCTTATGCCCAGGATGATAACATATGGATATTGGTTATCACATAAAACAATGACCATCTCtttattttgggcatttttaggcctttattgacaggacagatgaagacatgaaaggggagagacatgcaggaaagggccacaggtcagagtcgaacccaggcccactgtgtcaaggagtaaacctctatatatgggcgcccgctctaccaactgagctatccgggaaTTCAACAATGACCATCTCTGCTgccattataaaaataaatacacttttttccaaataaaacTTCAGGGAATATGAGCACAGGTGCTATTTCACACAGCAAATAGTATGTTTTGATGAGTAGGGCTATTGTTTAAGCCATCATTTCCTAATTACATTTATCCTAAGACAATATGCATCAGGATCTGAGGTAGCCAAACACATTTCTGACAGAAACCCTGTTTTCAAGTGTTAGATGCAGTAAAAAGAGGTTAGGTGTTCGAGGACATCAATGAAGGCTAAGCTGTTGAATTTGTGGATTTTTTAACCCCAGATTTTTTTATTGGTACTTAGGCTATTTTATGAATAAGGCAGTAAGACAGGGCCTCCATTTCAATTTACTTTTAAAATTCTAATGCTCACCCTTTCAAATCTGTTTATAATACTActgatattttatattatattttaatagcttcacacacaaatccacattatttgtattatgCCTACACTGTCATCCTTTGCTGTATAAAAGGGTGGAAGTGAAGTTTTAGTTAAGACACACAAGTCCATTTTTCCATGCGCTCACAGATTTGAAAAACTACCACTAAAATtgaattagattagattagtaAAACTACACTGAAAtatttcaatttttcaattGTGCTTACAGTTTCATATGCAAAATATGTAAATTATGtccaaaaataaacatttttatttatgca
>XM_039794361.1
CTAGCCTATCATGTTCCGCCTCTGGGTGTAGTAGTGTAGCAGTGTTTCCCCTTcagtttagcttagcttagctgtGAGTAATGAAACGGCTGTTGGCTCCGGGAGGAGGAGTTGTTTCTCAACAGCCACGaaATTAAGCGCTCACTATGTCTGATGGGGACTATGATTACCTCATCAAATTCCTAGCGCTAGGTGACTCTGGTGTGGGAAAGACGAGCTTCCTCTACCAATACACAGATGGCAAGTTTCACTCCAAGTTCATTACTACAGTTGGAATAGACTTCAGAGAAAAAAGAGTGGCATACAAATCAACGAATCCAGATGGATCTTCAGGTAGAGGACAGAAGATCCACATGCAGCTGTGGGACACTGCAGGACAGGAGAGGTTTCGGAGTTTGACGACCGCGTTCTTTAGAGATGCAATGGGTTTCCTCCTCCTGTTTGACCTCACAAATGAACAAAGTTTCCTCAACGTCAGAAACTGGATGAGTCAGTTACAGATTCACGCATACTGCGAAAGTCCAGACGTTGTTTTGTGCGGTAACAAATGTGACCTGTCAGATCAGAGAGCAGTCAGTGAAGAAGAGGCCCGTGAGCTGGCAGAGAAGTACGGAATCCCATACTTTGAGACAAGTGCTGCAAACGGGCAGAACGTCAACAAGGCTGTGGACGTCCTGCTGGATCTTATCATGAAGAGGATGGAACGATGTGTAGACAAGTCCTGGATCCCTGATGGGACCGTCAGAGTTAATGGACCCACCAACCCAGATATCTCAGAGGGCTCTGATGGGAGCAAATGTGCATGTTAGAATGAATGATGATGGTTTCACATCTATGCCCGTAATACTGAAACAAAATAGGAAGGCATCCAAGGTTAACCgtggagtatatatatatatatttactgatAAACTTTCATTGACATGCTGTATTATTTGTCTGTGAAGAGATAAGTGCTTTTTGAATGTAGGTATTTTATTTGAATTCATATAATGGGTCTTTTGACTAATTAATTCATATTGGGGATATTTATTCTTATGACGTCTTGCTGAAATGTCCAACTTTAGTCATCAGTCTGATATGCTGATCATACTTAGGGTCATATGAACGTTGTGCTCAAAGTCGCAGCAAAGAGTGCTGCCCTGCCAGGTGTGCTATAGATATACTGTTAATAATCTTTACTTGCTGTAAAGTTAGCGTAGATTCACACTGCAATTAAGTATGTTTCTCTTTGCACAGTCAGATACATGTTGACTGTGATACCTGCAGTCATGGTTTAATGATGGAGATAAATTTGCCAAGAAATTTACTTTTAGGAAACTTTAGTTACATACTATTGATGCTCTGCTGAATACTGCAATCTCATTGTTGCTTACAATGTTTGCACTTATTTGTCTCCAAAACGCAAATTATAGAATACGGTCTGGCCATGTCATTGACACTTCATTATATACAGGGACATGTTTGGCCAATAATTACAAACATTGGTGCTCAGTAGTTTGATAAAAGGAATAAATATGTCAAAGTAAAACCTTAGCAGGAACTCAGGTAATTCAGGTTGTTTATCCTGCCGTATGATGGACCCatgcaattttttattttttattccctCAATATTATTAGAGAAAGAAATATAAATGCAAAATCTTACTTTAGCTTTTGTAAACATTAAGTAGCACCAGCTGGTAAAGCTGACCCTCAGTCCCCTGTATAGCACATTTTTATCATTATTCACCTGTGACAATGCCTtcagttttaaaatgtacaTGTTTTAAAGTATACAGGAGAGATCCTAGATACTCATATCTTATGCCCAGGATGATAACATATGGATATTGGTTATCACATAAAACAATGACCATCTCtttattttgggcatttttaggcctttattgacaggacagatgaagacatgaaaggggagagacatgcaggaaagggccacaggtcagagtcgaacccaggcccactgtgtcaaggagtaaacctctatatatgggcgcccgctctaccaactgagctatccgggaaTTCAACAATGACCATCTCTGCTgccattataaaaataaatacacttttttccaaataaaacTTCAGGGAATATGAGCACAGGTGCTATTTCACACAGCAAATAGTATGTTTTGATGAGTAGGGCTATTGTTTAAGCCATCATTTCCTAATTACATTTATCCTAAGACAATATGCATCAGGATCTGAGGTAGCCAAACACATTTCTGACAGAAACCCTGTTTTCAAGTGTTAGATGCAGTAAAAAGAGGTTAGGTGTTCGAGGACATCAATGAAGGCTAAGCTGTTGAATTTGTGGATTTTTTAACCCCAGATTTTTTTATTGGTACTTAGGCTATTTTATGAATAAGGCAGTAAGACAGGGCCTCCATTTCAATTTACTTTTAAAATTCTAATGCTCACCCTTTCAAATCTGTTTATAATACTActgatattttatattatattttaatagcttcacacacaaatccacattatttgtattatgCCTACACTGTCATCCTTTGCTGTATAAAAGGGTGGAAGTGAAGTTTTAGTTAAGACACACAAGTCCATTTTTCCATGCGCTCACAGATTTGAAAAACTACCACTAAAATtgaattagattagattagtaAAACTACACTGAAAtatttcaatttttcaattGTGCTTACAGTTTCATATGCAAAATATGTAAATTATGtccaaaaataaacatttttatttatgca
>XM_039794363.1
tagcttagcttagctgtGAGTAATGAAACGGCTGTTGGCTCCGGGAGGAGGAGTTGTTTCTCAACAGCCACGGTAAGTAAATGAGGTGTCCAGTGTTAATGAAGCTGGTCTCATGTCAACTAATGGCCCAGAGTCAACGGAGAAAGTAAAGTTATCGTTTATTCACCTCTCAGTGAAGACTTAAACGTTCACTTGTAAACTACTACTTTACACCAAGACACAGTGCGCAGCAACGCCCAGGGGCTGaaATTAAGCGCTCACTATGTCTGATGGGGACTATGATTACCTCATCAAATTCCTAGCGCTAGGTGACTCTGGTGTGGGAAAGACGAGCTTCCTCTACCAATACACAGATGGCAAGTTTCACTCCAAGTTCATTACTACAGTTGGAATAGACTTCAGAGAAAAAAGAGTGGCATACAAATCAACGAATCCAGATGGATCTTCAGGTAGAGGACAGAAGATCCACATGCAGCTGTGGGACACTGCAGGACAGGAGAGGTTTCGGAGTTTGACGACCGCGTTCTTTAGAGATGCAATGGGTTTCCTCCTCCTGTTTGACCTCACAAATGAACAAAGTTTCCTCAACGTCAGAAACTGGATGAGTCAGTTACAGATTCACGCATACTGCGAAAGTCCAGACGTTGTTTTGTGCGGTAACAAATGTGACCTGTCAGATCAGAGAGCAGTCAGTGAAGAAGAGGCCCGTGAGCTGGCAGAGAAAATCCCATACTTTGAGACAAGTGCTGCAAACGGGCAGAACGTCAACAAGGCTGTGGACGTCCTGCTGGATCTTATCATGAAGAGGATGGAACGATGTGTAGACAAGTCCTGGATCCCTGATGGGACCGTCAGAGTTAATGGACCCACCAACCCAGATATCTCAGAGGGCTCTGATGGGAGCAAATGTGCATGTTAGAATGAATGATGATGGTTTCACATCTATGCCCGTAATACTGAAACAAAATAGGAAGGCATCCAAGGTTAACCgtggagtatatatatatatatttactgatAAACTTTCATTGACATGCTGTATTATTTGTCTGTGAAGAGATAAGTGCTTTTTGAATGTAGGTATTTTATTTGAATTCATATAATGGGTCTTTTGACTAATTAATTCATATTGGGGATATTTATTCTTATGACGTCTTGCTGAAATGTCCAACTTTAGTCATCAGTCTGATATGCTGATCATACTTAGGGTCATATGAACGTTGTGCTCAAAGTCGCAGCAAAGAGTGCTGCCCTGCCAGGTGTGCTATAGATATACTGTTAATAATCTTTACTTGCTGTAAAGTTAGCGTAGATTCACACTGCAATTAAGTATGTTTCTCTTTGCACAGTCAGATACATGTTGACTGTGATACCTGCAGTCATGGTTTAATGATGGAGATAAATTTGCCAAGAAATTTACTTTTAGGAAACTTTAGTTACATACTATTGATGCTCTGCTGAATACTGCAATCTCATTGTTGCTTACAATGTTTGCACTTATTTGTCTCCAAAACGCAAATTATAGAATACGGTCTGGCCATGTCATTGACACTTCATTATATACAGGGACATGTTTGGCCAATAATTACAAACATTGGTGCTCAGTAGTTTGATAAAAGGAATAAATATGTCAAAGTAAAACCTTAGCAGGAACTCAGGTAATTCAGGTTGTTTATCCTGCCGTATGATGGACCCatgcaattttttattttttattccctCAATATTATTAGAGAAAGAAATATAAATGCAAAATCTTACTTTAGCTTTTGTAAACATTAAGTAGCACCAGCTGGTAAAGCTGACCCTCAGTCCCCTGTATAGCACATTTTTATCATTATTCACCTGTGACAATGCCTtcagttttaaaatgtacaTGTTTTAAAGTATACAGGAGAGATCCTAGATACTCATATCTTATGCCCAGGATGATAACATATGGATATTGGTTATCACATAAAACAATGACCATCTCtttattttgggcatttttaggcctttattgacaggacagatgaagacatgaaaggggagagacatgcaggaaagggccacaggtcagagtcgaacccaggcccactgtgtcaaggagtaaacctctatatatgggcgcccgctctaccaactgagctatccgggaaTTCAACAATGACCATCTCTGCTgccattataaaaataaatacacttttttccaaataaaacTTCAGGGAATATGAGCACAGGTGCTATTTCACACAGCAAATAGTATGTTTTGATGAGTAGGGCTATTGTTTAAGCCATCATTTCCTAATTACATTTATCCTAAGACAATATGCATCAGGATCTGAGGTAGCCAAACACATTTCTGACAGAAACCCTGTTTTCAAGTGTTAGATGCAGTAAAAAGAGGTTAGGTGTTCGAGGACATCAATGAAGGCTAAGCTGTTGAATTTGTGGATTTTTTAACCCCAGATTTTTTTATTGGTACTTAGGCTATTTTATGAATAAGGCAGTAAGACAGGGCCTCCATTTCAATTTACTTTTAAAATTCTAATGCTCACCCTTTCAAATCTGTTTATAATACTActgatattttatattatattttaatagcttcacacacaaatccacattatttgtattatgCCTACACTGTCATCCTTTGCTGTATAAAAGGGTGGAAGTGAAGTTTTAGTTAAGACACACAAGTCCATTTTTCCATGCGCTCACAGATTTGAAAAACTACCACTAAAATtgaattagattagattagtaAAACTACACTGAAAtatttcaatttttcaattGTGCTTACAGTTTCATATGCAAAATATGTAAATTATGtccaaaaataaacatttttatttatgca

Function

symbol description
rab27a Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in melanosome transport and positive regulation of exocytosis. Predicted to be located in late endosome and membrane. Predicted to be active in melanosome and secretory granule. Is expressed in cloaca; nervous system; and pronephric tubule. Human ortholog(s) of this gene implicated in Griscelli syndrome type 2 and non-Langerhans-cell histiocytosis. Orthologous to human RAB27A (RAB27A, member RAS oncogene family).

NR:

description
PREDICTED: ras-related protein Rab-27A

GO: NA

KEGG:

id description
K07885 RAB27A; Ras-related protein Rab-27A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039794360.1 True 2855 mRNA 0.39 6 27410888 27425702
XM_039794361.1 False 2741 mRNA 0.38 6 27410828 27425702
XM_039794363.1 False 2851 mRNA 0.39 6 27410886 27425702

Neighbor

gene id symbol gene type direction distance location
ccpg1 NA coding upstream 7514 27391122 ~ 27403314 (+)
prtga prtg,LOC102785529 coding upstream 21461 27356268 ~ 27389367 (+)
mns1 mns1,LOC102786898 coding upstream 123272 27281412 ~ 27287556 (+)
znf280d znf280d coding upstream 131427 27261555 ~ 27279401 (+)
LOC120556070 NA coding upstream 149873 27252681 ~ 27260955 (+)
nudt21 nudt21 coding downstream 42163 27467865 ~ 27472009 (+)
tradd tradd coding downstream 64311 27490013 ~ 27499955 (+)
gnao1b gnao1,LOC103374184,LOC101483250 coding downstream 75464 27501166 ~ 27509230 (+)
thap11 thap11 coding downstream 122752 27548454 ~ 27552229 (+)
nrn1lb nrn1l,LOC101167108,LOC107381583,LOC103366277 coding downstream 129491 27555193 ~ 27560381 (+)
G30280 NA non-coding upstream 111261 27298829 ~ 27299567 (+)
G30235 cgnl1 non-coding upstream 278920 27130176 ~ 27131908 (+)
G30148 aqp9 non-coding upstream 381274 27016958 ~ 27029554 (+)
G30124 NA non-coding upstream 518263 26891684 ~ 26892565 (+)
G30023 NA non-coding upstream 1181836 26228729 ~ 26228992 (+)
G30287 ctcf,LOC103374180,LOC104965832,LOC102192328 non-coding downstream 25636 27451338 ~ 27455971 (+)
G30364 NA non-coding downstream 61102 27486804 ~ 27487597 (+)
G30423 NA non-coding downstream 211157 27636859 ~ 27637082 (+)
G30428 NA non-coding downstream 237498 27663200 ~ 27663466 (+)
G30461 NA non-coding downstream 385426 27811128 ~ 27811547 (+)
LOC120555577 NA other upstream 578 27409040 ~ 27410250 (+)
nedd4a nedd4,LOC103371920,LOC102785817 other upstream 58991 27318370 ~ 27351837 (+)
LOC120556198 LOC103371916,LOC104965843 other upstream 94647 27295757 ~ 27316181 (+)
nfat5b nfat5 other upstream 1483102 25883454 ~ 25927726 (+)
pkd1l2a vat1l,pkd1l2,LOC102776808 other upstream 1527468 25855839 ~ 25883360 (+)
vrk3 NA other downstream 586 27426288 ~ 27440414 (+)
LOC120555924 LOC103398348,LOC104965831,LOC103374185 other downstream 30714 27456416 ~ 27464759 (+)
G30295 NA other downstream 40076 27465778 ~ 27467021 (+)
ogfod1 ogfod1,LOC102779874 other downstream 47963 27473665 ~ 27486769 (+)
G30366 NA other downstream 61975 27487677 ~ 27488791 (+)

Expression


Co-expression Network