cdh16 (cdh16)


Basic Information

Item Value
gene id cdh16
gene name cdh16
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 22369351 ~ 22407710 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039794477.1
TATAAATATTCATGTGATCGTATCAGTGGACTGGAACCTCACTGGCCATTGGTTTTACAGGAAGGGAACAAGCAAATTAAGCATGTTTATCTCAAGGTGTTAACCATTAATCCACAAAAGGAGTACAAGTATGCAATTTTTCCACCCAATTTAAACTCCTCTCACACCTCAGAGGGAACACACTCACTTGGAGAAGGTAAGGTACAAAGCCTTTTGTTTAAAATAGGAGGATAATTGAATATGTTTGCTACTAAACTGATTTATTATCCACCTTTATCACTGCTGTTGTTGAGCTACAGTATATCCAGAGTTTGTTGTTGTACTTTAGAGACTTGAATTGGAGTCAGTGAAGTATATAGGGCATTAATGATACTTGTACACTGCACCGTAACCTGTGATTTGGtattgccaaaaaaaaagaagaatctgTATCCTGTATCTAAAAGATATTTGACAGACATTAAGGCTCCAGGGAAATTACATATTGTTCGCACCCAACTGGATTTTACCAGACACATGCTTTACTTCCAAATCAAATGTGACTTTATTGGTCTTCTGTGCTACTTTTAATAGTGGAGGCTCAGATGTTGCTTCAAACAGTGTTGTACGTTGTTATGTATTTAAATGCATGTAAAAACTGTGAAATCTATGAACCATTGTGGTGAATCAGTAACAAGAAAGAAATTGTGTTAATTGTTGGGCTGAGGCCATGTGATTTGAAACGCTGTGAATATGCCACATTTACAGGGACTCATGGCTGACAGAGGAGCTACGACAATGCTCATCATAGCTCTCATATTGATGATACTTTACACATTTGCACCATGCTCTGGGGCAAATGTTAAAATTGGTGTCCCTGAGAACTACGATGGTATTTTTCCATGGTATCTGGCCAAGCTCCATAGTCTGCCAGGTACCTACAGCGACCTGGTGGTAGGGGGGGATGATGAGGGGATATTTGGAGTCGACGCTCAGTTTCTGTACGCTCTAAAACCACTGGACAGAGAGAAACGGCCGTCTTACTCTCTGCAGGTGTCCTTCAGAACATCAGAGCACCGTCAGAGCTTTACTGTCGAAGTGTGCGTCATCGACAAGAACGACAATGTGCCCACTTTTATAGAGGAGAGCATGAGAGGCAGCGTGCAGCTCGGGCTTCTCAAAGGGATCCCATTCATGCAGGTGGAGGCGCTGGATCGTGATGACCGCAACACTGCCCACGCTGAGCTGCGGTTCAGCCTCATGGAACAGACACCCAGGATTCCCTCCAGCCAAATGTTCTTCATCGGCTCCATCACTGGAGAGGTTTCCCTCACGGAGGAAGGAGCCTCTACTCTGGACCCAGAGATGTGCGGCCGCTATAAGCTCTCAGTGATGGTGAAGGACATGGCTGGGAAGGCAAACGCTTTCTTCACCTCCGGCATCGTTACTGTCGAGGTGACAGGAAACACGTGGGCATCTCCCGACCCTGTACGACTTCAGGAGAACCTCCCCGGCCCCTACCCCATCCCCATCTCACAGGTCAAATGGAGTGGAAGTCAGGCAGTGTACAGTTTGGAGGGGGAGTTTCCAGAGATGCTCTTCACCATCAGCAGAGAAGGAGTCATTTATCTCAATGCCCCTctggacagagagacacaagacCAGTTTCAGATCAGCATTGTGGTTGAGCGTCCAGATGGCAGAGAGATTGCCAAGCCTGTGGAGTTGAGGGTGATGGTGGGTGACGCCAATGATAACAGACCCACCTTTCCAGAGGCACAGTACCACACAGTGGTCAAGGAACTGGCTGCTCGAGGGACAGAAATCCTGACAGTGCAGGCAGCCGATAACGACGATCCCAAGACGGACAACGTGCGGATCTTCTACCGTTTAGTCGGACAAATTCCAGAGAGCCCTCGTGCCCTCTTCAGAGTGGACCGTGACTCAGGGGTCATCTCCGTCCAAGCAGACAGTATGGAGGGCACAGCACCTCAATACACCCTCACCATCACTGCTGAGGATGCCAAAGGTCTTAACAGTTCGTGCACTGTGTTTGTGACGGTGCAGGATGAGAACAACAACCCGCCAGTCTTCTCCCAACATGAGTATGGGCCCTTTCACATTCCAGAGGACGCTCCAGTGGGCACCACAGTAACAGCTGTGCTGGCAGGGGATGCAGATGTTCGAGGAGGAGACAGCTGGAAGGTGGATTACCGTTTAGAGTCTGGGAACGAGGAGGAGGTCTTTACCTTAGTGACAGACAAGCAGACCAATGAGGTCTCACTCATCCTTTCAAAGGTCTTGGATTTTGAGCGGGAGAGTGAGTACATCCTCGTGCTCAGTGCTCAGAACCCAGTGGCTCTGGTCCGTGGCCGATACGGACCTGCATCCACGGCAACAGTCTCCATCTATGTCGACGATGTGAACGAAGGTCCAATCCTGTCTCAAAGCCATTATGAGGTGACTGTCAGAGAGGGCGAGGAACCAGGACGGGTTATCGCCACCATCCGAGGTTACGACCCTGATTCTCACCCAATCAGATATTCTCTTCAAGGAGACACCAAGAAATACTTTTCAATAGGGAAGTATTCTGGTGAACTGAAGACGGTGCAGGCCTTGGACCGAGAGGAGAACAGCACATACACCATGGAGGTCATTGCAGTGGATGGGCGAAACTCTTCCTTATCTGCGTCCACCCTGGTGACTGTCCATATCCTGGATGTGAACGACAACAGTCCAGTGCTGGTTGGAGACTATTCCTGGAAGTACCTGTGTACACCTCGATGGGAGGAACAAGCTCTGGTGCTGGCCTCGCGGGACAGTGATGGGCCACAGCACGGAGGACGACTCAACTTCTCCCTGcgcagtgatgtcacagtccgGCGTAACTGGAAGCTAACACCTATAAATGATACTCACACCAACCTGTCCTTAAACACCCCATACCTGGCCCCTGAGGTCTACACTGTGCCCTTCACCATCTCTGACAGCAGCTCTCCTCCCAGGAGCACCTTCATAAACTTGCCAGTGACAGTGTGTCCCTGCAACGTCAGAGGGAACTGCAAAATGGCTGCCAAGCAATTGCAGGGCATGCCAACTATTCAGTCTGCAGTGGGGATTCTGCTTGGCACCTTTGCAGTCATAGgGACTATCCTCATTGTTGTGTTCGTGAGGCTGTCATACCAGAATCCCAAACAGCCGAGCAAAACTAGCCAGGAGAGAGTTCCCCTGAAGATTTCAATCTAATTAGGATTACACTGTATTGTATGTCCTGCTCACTGCCTCAGCCAACTGGACCAATGTCACAATGTTTTCAGTGCACTGAATTCATTAAGTGAATGTCTAAAAATGAATTTGGTTTCAGTTATTGGATCAAAGTTCAGATGTACACTGACGTGAAAACAAAATATCAAGATTATTAATCAAGATGTGTAATGTATGTTAAGTGCTTAGGTTTGTGCCTGGGAAATGATGTTAACTTATGTTTTAGTTtgcaaacatttttattgcTGTAGAATATGTTTAAAAGTGGTGCCTAATAGAACAACAGTCTAGGGCCATGGTTTGGAAAATTGAGAGATTTGGAGAATAAAGGTATAATATTAAAAGAGAAAAGTTGCTATGTTTCAAGAATAAAGTTGTAATTTTTTAGAAGAAAGTCCTTTTTTTAGTTTAAAGtcataatataaaaaagttgcAAGATATTTAgatgaccttttgacctttTCTTAtta
>XM_039794478.1
tggatgTCTCGGCTCACAGCACTAGTCTGGAACCCCCGCAGAGCCACCTGCTGCTGGGAGGCTACAATGCTTTGTGGTGCCAGGAGTGAAGAAGTCTGACAGACACAAAAATGAGCGAGGGACTCATGGCTGACAGAGGAGCTACGACAATGCTCATCATAGCTCTCATATTGATGATACTTTACACATTTGCACCATGCTCTGGGGCAAATGTTAAAATTGGTGTCCCTGAGAACTACGATGGTATTTTTCCATGGTATCTGGCCAAGCTCCATAGTCTGCCAGGTACCTACAGCGACCTGGTGGTAGGGGGGGATGATGAGGGGATATTTGGAGTCGACGCTCAGTTTCTGTACGCTCTAAAACCACTGGACAGAGAGAAACGGCCGTCTTACTCTCTGCAGGTGTCCTTCAGAACATCAGAGCACCGTCAGAGCTTTACTGTCGAAGTGTGCGTCATCGACAAGAACGACAATGTGCCCACTTTTATAGAGGAGAGCATGAGAGGCAGCGTGCAGCTCGGGCTTCTCAAAGGGATCCCATTCATGCAGGTGGAGGCGCTGGATCGTGATGACCGCAACACTGCCCACGCTGAGCTGCGGTTCAGCCTCATGGAACAGACACCCAGGATTCCCTCCAGCCAAATGTTCTTCATCGGCTCCATCACTGGAGAGGTTTCCCTCACGGAGGAAGGAGCCTCTACTCTGGACCCAGAGATGTGCGGCCGCTATAAGCTCTCAGTGATGGTGAAGGACATGGCTGGGAAGGCAAACGCTTTCTTCACCTCCGGCATCGTTACTGTCGAGGTGACAGGAAACACGTGGGCATCTCCCGACCCTGTACGACTTCAGGAGAACCTCCCCGGCCCCTACCCCATCCCCATCTCACAGGTCAAATGGAGTGGAAGTCAGGCAGTGTACAGTTTGGAGGGGGAGTTTCCAGAGATGCTCTTCACCATCAGCAGAGAAGGAGTCATTTATCTCAATGCCCCTctggacagagagacacaagacCAGTTTCAGATCAGCATTGTGGTTGAGCGTCCAGATGGCAGAGAGATTGCCAAGCCTGTGGAGTTGAGGGTGATGGTGGGTGACGCCAATGATAACAGACCCACCTTTCCAGAGGCACAGTACCACACAGTGGTCAAGGAACTGGCTGCTCGAGGGACAGAAATCCTGACAGTGCAGGCAGCCGATAACGACGATCCCAAGACGGACAACGTGCGGATCTTCTACCGTTTAGTCGGACAAATTCCAGAGAGCCCTCGTGCCCTCTTCAGAGTGGACCGTGACTCAGGGGTCATCTCCGTCCAAGCAGACAGTATGGAGGGCACAGCACCTCAATACACCCTCACCATCACTGCTGAGGATGCCAAAGGTCTTAACAGTTCGTGCACTGTGTTTGTGACGGTGCAGGATGAGAACAACAACCCGCCAGTCTTCTCCCAACATGAGTATGGGCCCTTTCACATTCCAGAGGACGCTCCAGTGGGCACCACAGTAACAGCTGTGCTGGCAGGGGATGCAGATGTTCGAGGAGGAGACAGCTGGAAGGTGGATTACCGTTTAGAGTCTGGGAACGAGGAGGAGGTCTTTACCTTAGTGACAGACAAGCAGACCAATGAGGTCTCACTCATCCTTTCAAAGGTCTTGGATTTTGAGCGGGAGAGTGAGTACATCCTCGTGCTCAGTGCTCAGAACCCAGTGGCTCTGGTCCGTGGCCGATACGGACCTGCATCCACGGCAACAGTCTCCATCTATGTCGACGATGTGAACGAAGGTCCAATCCTGTCTCAAAGCCATTATGAGGTGACTGTCAGAGAGGGCGAGGAACCAGGACGGGTTATCGCCACCATCCGAGGTTACGACCCTGATTCTCACCCAATCAGATATTCTCTTCAAGGAGACACCAAGAAATACTTTTCAATAGGGAAGTATTCTGGTGAACTGAAGACGGTGCAGGCCTTGGACCGAGAGGAGAACAGCACATACACCATGGAGGTCATTGCAGTGGATGGGCGAAACTCTTCCTTATCTGCGTCCACCCTGGTGACTGTCCATATCCTGGATGTGAACGACAACAGTCCAGTGCTGGTTGGAGACTATTCCTGGAAGTACCTGTGTACACCTCGATGGGAGGAACAAGCTCTGGTGCTGGCCTCGCGGGACAGTGATGGGCCACAGCACGGAGGACGACTCAACTTCTCCCTGcgcagtgatgtcacagtccgGCGTAACTGGAAGCTAACACCTATAAATGATACTCACACCAACCTGTCCTTAAACACCCCATACCTGGCCCCTGAGGTCTACACTGTGCCCTTCACCATCTCTGACAGCAGCTCTCCTCCCAGGAGCACCTTCATAAACTTGCCAGTGACAGTGTGTCCCTGCAACGTCAGAGGGAACTGCAAAATGGCTGCCAAGCAATTGCAGGGCATGCCAACTATTCAGTCTGCAGTGGGGATTCTGCTTGGCACCTTTGCAGTCATAGgGACTATCCTCATTGTTGTGTTCGTGAGGCTGTCATACCAGAATCCCAAACAGCCGAGCAAAACTAGCCAGGAGAGAGTTCCCCTGAAGATTTCAATCTAATTAGGATTACACTGTATTGTATGTCCTGCTCACTGCCTCAGCCAACTGGACCAATGTCACAATGTTTTCAGTGCACTGAATTCATTAAGTGAATGTCTAAAAATGAATTTGGTTTCAGTTATTGGATCAAAGTTCAGATGTACACTGACGTGAAAACAAAATATCAAGATTATTAATCAAGATGTGTAATGTATGTTAAGTGCTTAGGTTTGTGCCTGGGAAATGATGTTAACTTATGTTTTAGTTtgcaaacatttttattgcTGTAGAATATGTTTAAAAGTGGTGCCTAATAGAACAACAGTCTAGGGCCATGGTTTGGAAAATTGAGAGATTTGGAGAATAAAGGTATAATATTAAAAGAGAAAAGTTGCTATGTTTCAAGAATAAAGTTGTAATTTTTTAGAAGAAAGTCCTTTTTTTAGTTTAAAGtcataatataaaaaagttgcAAGATATTTAgatgaccttttgacctttTCTTAtta

Function

symbol description
cdh16 Predicted to enable calcium ion binding activity. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Orthologous to human CDH16 (cadherin 16).

NR:

description
PREDICTED: cadherin-16

GO: NA

KEGG:

id description
K06810 CDH16; cadherin 16, KSP-cadherin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039794477.1 True 3713 mRNA 0.47 17 22377302 22407710
XM_039794478.1 False 3085 mRNA 0.49 18 22369351 22407710

Neighbor

gene id symbol gene type direction distance location
lmo7b NA coding upstream 142245 22189896 ~ 22227106 (+)
LOC120555860 NA coding upstream 447475 21911406 ~ 21921876 (+)
LOC120555410 LOC102205483,LOC101478550,LOC103365221,LOC100711032,LOC102299296,LOC102798867 coding upstream 659970 21699803 ~ 21709381 (+)
LOC120556067 NA coding upstream 687586 21674424 ~ 21681765 (+)
mrpl16 mrpl16,LOC102799737 coding upstream 695052 21668518 ~ 21674299 (+)
nae1 nae1 coding downstream 25801 22433511 ~ 22440373 (+)
dync1li2 dync1li2 coding downstream 63799 22471509 ~ 22488379 (+)
cmtm4 cmtm4 coding downstream 81802 22489512 ~ 22507555 (+)
trappc2l trappc2l coding downstream 131570 22539280 ~ 22542996 (+)
trnag-ucc_7 NA coding downstream 139491 22547201 ~ 22547272 (+)
G29085 NA non-coding upstream 848 22368129 ~ 22368503 (+)
LOC120556188 NA non-coding upstream 208456 22159570 ~ 22160895 (+)
G29005 NA non-coding upstream 239773 22128964 ~ 22129578 (+)
G29004 NA non-coding upstream 284950 22083945 ~ 22084401 (+)
G28990 NA non-coding upstream 479802 21886589 ~ 21889549 (+)
G29101 NA non-coding downstream 256 22407966 ~ 22408239 (+)
G29135 galns non-coding downstream 126232 22533942 ~ 22534868 (+)
G29139 NA non-coding downstream 140990 22548700 ~ 22601559 (+)
G29176 NA non-coding downstream 344758 22752468 ~ 22753645 (+)
G29241 ist1 non-coding downstream 589992 22997702 ~ 23001049 (+)
gpc5a gpc5,LOC103365231 other upstream 497326 21720034 ~ 21872025 (+)
dcun1d2b dcun1d2,LOC102792160 other upstream 765445 21596331 ~ 21603906 (+)
tpp2 tpp2 other upstream 806537 21525592 ~ 21562814 (+)
grk1a grk1 other upstream 936204 21421110 ~ 21433147 (+)
G28826 NA other upstream 965901 21396213 ~ 21403450 (+)
ankrd11 ankrd11 other downstream 357009 22764719 ~ 22895007 (+)
LOC120555548 LOC103365626,LOC104942698 other downstream 574073 22981783 ~ 22994164 (+)
G29292 NA other downstream 729022 23136732 ~ 23137027 (+)
igdcc3 igdcc3 other downstream 1035439 23443149 ~ 23517263 (+)
G29433 NA other downstream 1319302 23727012 ~ 23732471 (+)

Expression


Co-expression Network