LOC120555642 (fsd2)



Basic Information


Item Value
gene id LOC120555642
gene name fsd2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 18575060 ~ 18584594 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence


>XM_039794523.1
CCTATGACATTTGAGCAATCTGAGTCCCATCTATTTTTGTCACAGCTTCTGGGTGAGGGTTGAACTACTTACAGAGCTGGCTTGTCGGACACCACTGTTGGCCTGTAATGGCTGCTTAGAACAGACTGGTTTGCTGAATTATCCAGCCACAGTGACTCTCCTAATGGACTTGAATGAGATCAGAGGGGGCAGACTGGATGTGATTGCAGAGGAAGCTGAGCACCAGGAGTTAAGCAGAGAGTTGACGGCCATGGCAGACGGAGGAGGGAGGGCGACCCGAGGAGTTTCCACCTTCCAGAGGTTTTCTATTGACACCAACGAGTCCCTTCATTTTGAGCCCTGTGAGGACAGCCTTCCATCTCCCACTGGGGCGGAAGGACTTGATGACGATGTGTTTAAAGAGAGAGGAACCGAGGGTGAGAGCGTCACAATCAGGAATCGGTTGCAAGGGAAGGTTGCTGAGATGGAGAACTTTGCAGGTCATCTGGAGGAAATCTTTCTCACTGTGGAGGAGAATTTTGGCCGTCAGGAGCAGCACTTGGAGCAGCATTACAACGACGTGCTCCAGACGTTGTCTCAGCGATATGACGAGAGGGCGGCTGgactggaggaggagaagaagggcAAGCTGGAGGCCCTGTACAAGCAGCTGCTGGCTTGTGGCCGGGAGATGGATGCCTCCAAGGAGCTCATTGAGACAGCCCAGGAGGTCTACCGCAGCCAAGACAAGAGGCTTTTCCTAAAGGCAGTTATGCCCACCATAAAAAGAATCGAGGAGTTCGTCAAAGAGGAGGTTGACCTCACGTTGTCTACAAGTCTTGAGTTTAACACACCCCTTGCTGACCTGTCAGATGTCAAAACCATGATGGACTCCATCAACGTTGTCCCAGCTCCATCTGCCCCGGTGATCAACCCCCAGATGCCCAACTCTGCCACCCAGACGTCACTGCGTGTGTGCTGGAGCTTGTTCTCCGACGACACGGTGGAGTACTACGAGCTCTACTACAGACCGGTGCTGGAGGACACACCGGCAGACAGCGCGTGTGCACCACATGTAAGCAAGATCAACGTGAAGGAGACCCACTGCACTGTGACAGATCTGCTGCCCAATGCTCAGTATGAACTCTGGGTGACTGCTACCAACACCACAGGCATCAGCCCAGCGAGCGAGAAGGCCTTATACGTGACGGtgcCGTCGCCTCCAGTGATCAAGCAGAGGGAGTGTACTAGCTGTCGAGAGGCTGCTCTGATCCGCTGGGAGTCAGGGAACCCCAACCCTGTAGACTCTTACACGGTGGAGCTCAGTGAGATGGGTACTGATGGCACAGAGAGCGGTACTACGGAGTCTATAGTAGCCGTGCCCAGCTGTCAGTGTCTGATCCAGCTGCAGACAGGACGCCGTTACCTCATCTCTGTGAGAGCAGTCAACATCGGCGGGCCCAGCGACAGGAGTGAAGTTATTACTGTCTCCACAACAGGTACATTCTTCTACCTCCTGGAGGACACTGCCCATCCTTGCCTGTCCATCTCTGAAGACGGCTTCACCATGTTTTATGGAGATGAGGAGCTGCCAATTAGCGCTATGGCCTTAGACGATAACAACACCTTTACCAGATGTGTAGCTGTCCTGGGGGATCTGATCCCAGTGCGAGGCCGGCATTACTGGGAAGTTGAGGTGGATGATGGGACGGAGTTTAGGATCGGCGTTGCATCCGAAGACACAGAGAGGAACTCGTACCTCGGAGCCAACAACACCTCCTGGTGTATGAGACACATTCTCACCCCGTCCAGGCATAAATATGAGTTTCTGCACAATGGCTGGAGTCCAGACCTGAGGATTACAGTAAACCCAGTGCGGATAGGAGTGGCACTGGACTACGAGAGGGGGACTCTGTCCTTTTTTAATGTGGATCTGGAACAACATCTACACACCTTCCACTGTCACTTTCGAAATTATGTCCACCCCTGCTTTGGCCTGGACAACCCAGGAGCTCTTACTGTACACAATGACATAGAGGCTCCCGAGTACACAGTCATCTGACTCCAGCAATCTTTTCCAGGGATGGAAAAAAGTGAAACTACTTTGGTTATTAATACTTATCAAAGTTCTggttgacagccctaataaaaaataaaataaacattgtaAACACCCAAATtataaaaacctaaaaaaatctGATGACCTTCCCCAGCAATATAAAATGTGTGGGATCCAAAGACAATAAGGTTTTTAGGTGGTTTATTATAGTATTCCATGGGAACAGGCATACACCATTTTCCAAGATATGAAAAAAGTTAAACTGAATTTTACAATATGTATTTATAGCATCAGTAACTTGCAGCAGACCAAGtgttcaaattaaaaaaaagaaagaaataagggGCTTGTTTTTGATTAACCAAAGAAGTttgttttaagaaataaaaatatttataaagtattcacatctttaaaaaaggaaaaatccacCCTGAATACTTCCACACTGTAAAACGTGAATATTTTGTTTAATAGAGATATATATTTTGCCAACAAAAAATGTCTCTGTATTTAAGAAACTGGTAAGTGCACGTTTTAGAGGGAGACCcttggaattaaaaaaaaaaaaaggcttctaTCAAGACCACAGTAACACAAGGAAGAAAGACACCGTAAAaaggaatttgttttttaaaaccaaaaccTCAAACTTCCCTAACGAGCATGAAGCCACAAGATGTGCTGCATTTTAAGACATGTGGCTACAAACATATGCACAATGAAACTAGTTGGCAGATTATCAATATATACAGTTGCTATAAAGTTGGGCATACATTTAAATATGCCCACCTTTGACTAAAACCAACAGGTTCACACCCATTGTGTGAGCGGTTACAGAAAGGCATTCagggagaaaaataaaaacactaacTGAAACGGAAGTACACAAAGCAAAACCTACAACAGGACAAGACAATTAAAACCTTTCTTCCTTAAGAGTCCAGGAAAGCACCAAACATCAGAAAGTGGGAATTCAAAGACCATACCAGTGTTTTTTGCATCTTCACCCAGTTTACTACAAATAATCTGTACTTTACATTAACGCTGTATAAAGATTGTCAACCTC

Function


symbol description
fsd2 Predicted to be located in nucleus; perinuclear region of cytoplasm; and sarcoplasmic reticulum.

NR:

description
PREDICTED: fibronectin type III and SPRY domain-containing protein 2

GO: NA

KEGG:

id description
K24490 FSD2; fibronectin type III and SPRY domain-containing protein 2

RNA


RNA id representative length rna type GC content exon number start site end site
XM_039794523.1 True 3110 mRNA 0.46 13 18575060 18584594

Neighbor


gene id symbol gene type direction distance location
LOC120556233 LOC104953026,LOC102209912,LOC102302305,LOC101469394 coding downstream 93037 18471714 ~ 18482023 (-)
LOC120555694 LOC101077645 coding downstream 108979 18456550 ~ 18466081 (-)
usp8 usp8,LOC102785891 coding downstream 124041 18439582 ~ 18451019 (-)
tmod2 tmod3,LOC102784726,LOC102314562 coding downstream 214850 18335550 ~ 18360210 (-)
lysmd2 lysmd2 coding downstream 247272 18321428 ~ 18327788 (-)
homer2 homer2 coding upstream 22875 18607469 ~ 18639221 (-)
ap1s2 ap1s2,LOC101078094,LOC107095773,LOC103463884,LOC101477195 coding upstream 86758 18671352 ~ 18676489 (-)
LOC120556226 LOC103360767 coding upstream 114751 18699345 ~ 18705558 (-)
ppef1 NA coding upstream 121696 18706290 ~ 18718603 (-)
cdkl5 LOC106914639,LOC103143564,LOC106952012,LOC105934466,LOC101067260,LOC102215627 coding upstream 144182 18728776 ~ 18767719 (-)
G28309 NA non-coding downstream 5983 18568101 ~ 18569077 (-)
G28302 pde8a,LOC104953025,LOC106596071,LOC108251619,LOC102210709 non-coding downstream 16841 18542458 ~ 18558219 (-)
G28291 NA non-coding downstream 76971 18497849 ~ 18498089 (-)
G28284 NA non-coding downstream 103610 18469813 ~ 18471450 (-)
G28267 NA non-coding downstream 188452 18385531 ~ 18386608 (-)
G28429 NA non-coding upstream 421314 19005908 ~ 19008421 (-)
G28437 NA non-coding upstream 452254 19036848 ~ 19037059 (-)
G28438 NA non-coding upstream 468730 19053324 ~ 19053869 (-)
G28442 NA non-coding upstream 478734 19063328 ~ 19063839 (-)
G28447 NA non-coding upstream 499708 19084302 ~ 19087065 (-)
G28269 mapk6 other downstream 154561 18416069 ~ 18420499 (-)
G28265 NA other downstream 191418 18382705 ~ 18383642 (-)
G28121 NA other downstream 354510 18218122 ~ 18220550 (-)
c3h15orf48 clg1h15orf48,csgr07h15orf48,LOC103353210,LOC107085327,LOC104951152 other downstream 973670 17599750 ~ 17601390 (-)
G27925 LOC103353204,LOC106512954,LOC102223374,LOC104951141 other downstream 1061892 17508123 ~ 17513168 (-)
LOC120556268 btbd1 other upstream 65435 18650029 ~ 18658659 (-)
G28345 NA other upstream 134778 18719372 ~ 18720019 (-)
LOC120555695 NA other upstream 469497 19054091 ~ 19069996 (-)
LOC120555836 pcnp other upstream 538947 19123541 ~ 19126411 (-)
LOC120555658 NA other upstream 2995374 21579968 ~ 21583558 (-)

Expression



Co-expression Network