grtp1a (grtp1)


Basic Information

Item Value
gene id grtp1a
gene name grtp1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 21614701 ~ 21626517 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039794545.1
GTTCCGGGAATCCCTCGAAAGCAGCATTAGGTCTGATTGGCGTGTGCCCTGGGAAAAACGTCACGAGTCCGAAATCTTCCATTGAGTAGTTAGTTGGTCCGAACAAGAGGAGTGGAAGTGACTTGTATTTGGATTACATTGGGTTGCATTCGTGTAACTGTTGTTATTGTAGCTTGGTTAGTTAACGTTAACACTCCGAGGAGCAAGCAGCAGGTGCATGTGGATGGCGATAACATTAAATGCAAAGTCCGCTCTCTCCACGCGGGGTGAACATCGGCGTATCCATAAAATATTGAAAGAATCCAACTAAAGCAAGTGCTTGGTTTCGCGGCTTTCCCCTTTCGAGAATAGCATGTTAATCCCAGGAAAAAGCAGCGTCTCTCCGTCCCGAGTCTCCTCACGCAAACATGGAGAAAAGTTCAAAGTGAACGGTAACTTACCTCAACTGTGACGTCGACATTCATGGTAGTTGTAAACTTGTTTTggcctcttttttttgttggagaAAAACAACACGGCGGATACATGGTGAGACTCTAGCACACATATTCTCAGGATATCACTGGAGCAGAAGAGGCAATGGAGAAGAAGAACAAGGCGACCGATCGGACCCGCTCCCCGGTTGACGGTAGAGCCAAAGACCGAGTggacagCGTGGATCCGTATGGCTTTGAGCGCTCAAAGGACTTTGATTACGAGTCATACGAGGAGCTCATGTCTGAGTATCTAGTTGTGCTCACCCGACGATCCATCAAGTGGTCCAAACTACTGAAGGGCAAACGCAAGGTGCAGAAGAATGTGAAATTAAAGCGTTACGTACGTAAGGGGATTCCCAATGAGCACCGGGCTCTGATCTGGATGGCAGCCAGTGGGGCCCAAGACCAGCTAGAGAAGAACCCAGGATACTACCAGTCCCTGCTCCGAGCCGAGCACGACCCCAAACTGGTGGAGACCATCTGCACAGacTTGAACAGAACATTTCCAGACAACGTCCAGTTCCGCAAGACATCCAACCCATGTCTGCAGAAAGCTCTGTACAATGTGCTACTGGCTACTGGCTACCACAACCCAGTTGTGGGCTACTGTCAGGGGATGAACTTCATAGCTGGGTATCTTCTTATCATCACAAAAGATGAAGAGAAGTCCTTCTGGCTGATGGAAGCACTACTCGCTAGAATTTTACCTGACTACTACAGTCCAGTCATGCTGGGGCTCAAGACGGACCAGGAGGTGTTAGGGGAACTGGTGAAAGTTAAAATCCCCGGAGTCTGGCAGACCATGATGGATCATAATGTCATGTGGACCCTGGTGGTCTCCCGATGGTTCATCTGTCTCTACATAGACGTCTTGCCAGTAGAGACAGTTTTGCGGATTTGGGATTGCCTGTTCTATGAGGGCTCCAAAATCCTGTTCCGTGTAGCTCTCACACTGATCCAACACAACCAGGCTCTGGTTCAACAGGCCCAGTCACTGCCGGACATCTGCCAAAGCTTCAAGCAGATCACCCATGGACCATTTGTTGATGAATGCCACACTTTCATGCAGAAAATCTTCACTGAACCAGGAAGTCTCTCCATGGCAACCTTGACTAAGCTGCGGGCGACATTTCGTTCTCGCATTATTACAGAAGAACTCGGCCCAACTGATCCTGAAAGTTAATACACACATTCCACTAAGGAtgagcacctttttttttttttttttttactttactaatgTCACAGTGACTTCTACATACTGTTGAGTTTGTGTCTTAAACATTTTCCTTCAGGCTATAATACTGCCCAAGTGTAAATATATGGTGACAGGAGAATATTCTTAGCAATGTGCGGTATGAGCTGACGATTCCATTTGAAATGtagcttcttcttctgttaaaTAATGCACTTTACTCCAGAAAGTCAGCGACACTGTAGAGAGAAAGCTCGGCAGAGGTCAGGTCAGATAAAGAATGTGTTGCACACTGTGAGTACAGCCAGGAGGCCTACTGCATTTCACGTCAAAAGGTTGATTTGACAAAACTCCATGCTGGCACTACCTTCTGTGAAGTCGAATGTGAATTATACTGGATTACATAACAGAAACAGATTTtgttaaacaatttaaaatcagATTCTTGTACTTATTGCATGTGTTCAGGTTTTGAGCAAATGTTGTAGTTCCTGACCTCAGCCGTTAATTCAAGTGCACTATGATGAAATTATTCTAAGTATAATTTAAAGGGCTGctctctataaaaaaaaaaataaataaaagatcaaATCACTGCA

Function

symbol description
grtp1 Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity and intracellular protein transport.

NR:

description
PREDICTED: growth hormone-regulated TBC protein 1

GO: NA

KEGG:

id description
K19953 GRTP1, TBC1D6, MSB3_4; TBC1 domain family member 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039794545.1 True 2270 mRNA 0.45 8 21614701 21626517

Neighbor

gene id symbol gene type direction distance location
adprhl1 adprhl1,LOC102790835 coding upstream 1414 21605117 ~ 21613287 (+)
LOC120556135 tmem255b coding upstream 161398 21434259 ~ 21453303 (+)
ercc5 ercc5,LOC104958986 coding upstream 224154 21381209 ~ 21390547 (+)
trmt10c NA coding upstream 240559 21372157 ~ 21374142 (+)
nkpd1 LOC104962748 coding upstream 262637 21331153 ~ 21352064 (+)
tgfbrap1 tgfbrap1 coding downstream 24228 21650745 ~ 21667717 (+)
mrpl16 mrpl16,LOC102799737 coding downstream 42001 21668518 ~ 21674299 (+)
LOC120556067 NA coding downstream 47907 21674424 ~ 21681765 (+)
LOC120555410 LOC102205483,LOC101478550,LOC103365221,LOC100711032,LOC102299296,LOC102798867 coding downstream 73286 21699803 ~ 21709381 (+)
LOC120555860 NA coding downstream 284889 21911406 ~ 21921876 (+)
G28812 NA non-coding upstream 158161 21357332 ~ 21456540 (+)
LOC120556583 NA non-coding upstream 201492 21409652 ~ 21413209 (+)
G28804 NA non-coding upstream 293076 21321312 ~ 21321625 (+)
LOC120555568 NA non-coding upstream 471511 21142725 ~ 21143190 (+)
G28792 NA non-coding upstream 540946 21073541 ~ 21073755 (+)
G28880 cul4a non-coding downstream 10014 21636531 ~ 21638081 (+)
G28976 NA non-coding downstream 91971 21718488 ~ 21718824 (+)
G28990 NA non-coding downstream 260072 21886589 ~ 21889549 (+)
G29004 NA non-coding downstream 457428 22083945 ~ 22084401 (+)
G29005 NA non-coding downstream 502447 22128964 ~ 22129578 (+)
dcun1d2b dcun1d2,LOC102792160 other upstream 10795 21596331 ~ 21603906 (+)
tpp2 tpp2 other upstream 51887 21525592 ~ 21562814 (+)
grk1a grk1 other upstream 181554 21421110 ~ 21433147 (+)
G28826 NA other upstream 211251 21396213 ~ 21403450 (+)
G28770 NA other upstream 853554 20711104 ~ 20761147 (+)
gpc5a gpc5,LOC103365231 other downstream 93517 21720034 ~ 21872025 (+)
ankrd11 ankrd11 other downstream 1138202 22764719 ~ 22895007 (+)
LOC120555548 LOC103365626,LOC104942698 other downstream 1355266 22981783 ~ 22994164 (+)
G29292 NA other downstream 1510215 23136732 ~ 23137027 (+)
igdcc3 igdcc3 other downstream 1816632 23443149 ~ 23517263 (+)

Expression


Co-expression Network