ccne1 (ccne1)


Basic Information

Item Value
gene id ccne1
gene name ccne1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 5630622 ~ 5643404 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039794560.1
ATTGCATCGAGTTGGTTAAGCTTTGTTCAGCTGCCACCTGTGTAGCTAAGCTAACTAAACCGCAATAAGTTCGATAACGAGATAAAGCTGTGTATGGATGTTGATGCTTAAATGTCGCCCGTTTTCACCTGGGTGTCCGGTGCTGTTACTGTTAAAtggtgaattaaaaaaataggcGTCTCAGCTGTGCCTGTCGTTCGGCCATTATGTGGCAAGCCAGCTGTCCAACGTTAGTGGAGGGAAATAACCAGCTTCCCCTGAAAAATACGCGATAGAACAACGTTTAGCAGCTAGTATAATATCTGATgTTTACTCCCAAACTGACACATACCCCTCCGAGTATAATGCGAGGACAACGGGAAGAGACAGAACCGAGGTCTGTTGCTCCCAAGGCACCCGAAGAAACTACAGTACGACCGAGAAAGAGGAAGGCAGATGTTGCTATTTATTTACAAGATCTGGATGAGGAGGTAGCAGAGATGACGAAGAAGAAGCAGCGTGAATGCGAGCTGGGCTGGGGTCCTGATGCTGGTTACACAAGTCCACAGAGGTGGATTCCCACACCTGATCAGGAAGAGGTTGCCCTGATAAACGCAGGTTTCCCCCACTACAACTTTAACAACGTATTTGTAACACCCGTGCGTTGTGCCCCGCTTCCTGCGTTGTGCTGGGCCAGTAAGGATGTGGTATGGAACAACATGTTGGAGAAGGATAAGACTTACACCAGGGATGTCCATGTGATGGAGAAACATCCTCATCTGCAGCCCAAGATGAGGGCAATTCTCCTGGACTGGCTCATGGAGgtgaGTGAGGTGTACAAACTGCACAGGGAGTCGTACCACCTGGCTCAGGACTACTTTGATCGCTTCATGGCCACACAGAGAAACGTCTTCAAATCAACGCTGCAGCTCATAGGCATCACCTGTCTCTTCATCGCTGCCAAAGTAGAGGAGATGTATCCTCCCAAGGTCCACCAGTTTGCCTACGTTACAGACGAAGCCTGCACTGAAGATGAGATTCTCAGTATGGAAATCATTATTATGAAGGAGCTGAAGTGGAGTCTCAGCCCTCAGACTCCCATCTCCTGGCTCAATGTTTACATGCAAGTGGCCTACCTGAAAGAGACAGACGAGCTGCTCATCCCCAAATACCCCCAGACTACTTTCACACAAAtcgcagagtTGTTGGACCTGTGTATGCTCGATGTGCGTTGCCTTGAGTTTTCCAATGGCATCCTTGCTGCTTCAGCCCTGTTTCACTTCTCCTCTCTGGAGCTGGTGGAGAACGTCTCAGCTCTGAAGAGGGTGGAGGTAGAGGCGTGTGTGAGGTGGATGGTGCCATTCGCCATGGCGCTGCGGGAGGTCGGTGGCTCGTCCATGAAGACGTTCACAGGAATCCCTGCAGATGACATGCACAACATCCAGACACATGCCTCCTACATTACATGGCTGGACAAGGCCGGCTCTTACCAGGATGCAGATTTGAAGCAACACGGCAACTGTCCGGTACCTTCCGGCGTCCTGACTCCCCCGCAGAGCAGTGAGAAAACTGAAGAGTTGGTCCGATTGGATACCGCAGTGCTGAAAATCAGGCCCAGGATTCGTACTCCATCCCCGCAATGCCGCCTCCAAAGTAGTGAAGCAAACACTGAAACTGACAAGACGACAGAAATTGCGAATTAGATTTTTAACATTCTAGCTGTAAGAGGAAGAAAAGCAACTCCATTGTGTTGACACTGCAGATGGATTTTCAGCGGGGAATCATTGATTTGAAATGGTATTTTCTCCCAAGTCACGGTGATTACTTGGATCCAGATGCTTTTAAATGTCTCTGTAGTGGGTGTTTACACACAGGGGCTTCGACTAAATTGGGGGGGAAAACGCTGACAAATGGTGAGGATAGCCCCCCACAGGAATCTTACCTATTTAAACCTTCAGTTTAGATGAAATCGCAAAGCTAAGGGATGGGACGGCTCAAGAGATATGTCTTTTTGAATAGCCTTGTGCCATAATGCTCGCATTAATTACCAACCAAACCTACATGTCGCGGTTGccgttttttattttctatgcaGAGGCCAAATTGAATGGACATTTTTATGGTTTCTCTACTTgatttagagtgtgtgtgtttgtgtatttgtgctgTTTTAATATCAGTGGCCTCATTTGCCCAAAAACTATTCCTAGGGTCATATTTGGCTCTCTGTGCTGCTATAAAAGTGGGCTTTGCATGATGGAGGGGGAATgtgaatgcgtgtgtgtgcgtgtgtgtgtgtgcgtgtgtgtgtgagagaggggtCACAAATAAATGGTGTGAAGCTCTTGTTTATGGTTCTACTCTACGCCATTTTTGTCAGACAAAGCATGGCCATGTTTTGCGTAGGGACCAGTAGCTTGGCTACCTTAATGGAGCGAACCAGCCAGGCTTCAGAAGCTAAAATATTGAttgtatttaactttttttttttttttaaatctcaacCTGCGGTTTGTTTCCCCACCACCCAAATGTAaatctattttgatgttttaaaataaaatgctgctACATATTTTCCATTAAAGACAATTTCTgaagactttttaattaaacaatattttgtGGTTATATATTTTCA
>XM_039794561.1
GTATGACGACCCATGCTGGAAATGGGCGCCTCGCTAGAAGCATCCGCGTGCtaacatgttgtttttttgctaaaTAACAGACGCGCCCAGGGTGACAGCGAGAGAGAACCGTAGGGGGAGTTCGCTGAACGGAAAGGCTCAATTACCTTACAACAATTCGGTcgttttaagttttattttaggCTTAATCCGAAAGGACTACGGCTTTGTTTACATCTGACAGACTAGCCACGCGGTGCCCGGGCACTTCCTCTTTGGAAGCGCCGCCCCCTGCAGCTGTCACCACAGCGGTCACGCCTCCCGGTTTGCCGGTTAACTTATAActtatttgtctttttctttagcACGAGACATATCTACTATATCAAAAGCATGTGCTCAACACACGATACATGTGTGAAAACTGGGGTGAACTGAGTTGAAATGAGACTATAAAGGGGCGGTGAAGCTGGGGGTTTAGCGCCAAGTTAAATCCACTCCTCTCTGACGTTGATGCTTCAAGTCATCTGTTCTTCTGTGCAAGGCGCCAGCTCAGAGGAACTAGCCCCggcctggagacacacacacactcgcacaggGAGCACCCCGAGTCCGAACAACAGGCGGTGAAGTTCCACATCCCTTCGTATTTCTTTAGACGTGGATAAGAGTGAACTTCAAGGGACAGAATCTTGAGgTTTACTCCCAAACTGACACATACCCCTCCGAGTATAATGCGAGGACAACGGGAAGAGACAGAACCGAGGTCTGTTGCTCCCAAGGCACCCGAAGAAACTACAGTACGACCGAGAAAGAGGAAGGCAGATGTTGCTATTTATTTACAAGATCTGGATGAGGAGGTAGCAGAGATGACGAAGAAGAAGCAGCGTGAATGCGAGCTGGGCTGGGGTCCTGATGCTGGTTACACAAGTCCACAGAGGTGGATTCCCACACCTGATCAGGAAGAGGTTGCCCTGATAAACGCAGGTTTCCCCCACTACAACTTTAACAACGTATTTGTAACACCCGTGCGTTGTGCCCCGCTTCCTGCGTTGTGCTGGGCCAGTAAGGATGTGGTATGGAACAACATGTTGGAGAAGGATAAGACTTACACCAGGGATGTCCATGTGATGGAGAAACATCCTCATCTGCAGCCCAAGATGAGGGCAATTCTCCTGGACTGGCTCATGGAGgtgaGTGAGGTGTACAAACTGCACAGGGAGTCGTACCACCTGGCTCAGGACTACTTTGATCGCTTCATGGCCACACAGAGAAACGTCTTCAAATCAACGCTGCAGCTCATAGGCATCACCTGTCTCTTCATCGCTGCCAAAGTAGAGGAGATGTATCCTCCCAAGGTCCACCAGTTTGCCTACGTTACAGACGAAGCCTGCACTGAAGATGAGATTCTCAGTATGGAAATCATTATTATGAAGGAGCTGAAGTGGAGTCTCAGCCCTCAGACTCCCATCTCCTGGCTCAATGTTTACATGCAAGTGGCCTACCTGAAAGAGACAGACGAGCTGCTCATCCCCAAATACCCCCAGACTACTTTCACACAAAtcgcagagtTGTTGGACCTGTGTATGCTCGATGTGCGTTGCCTTGAGTTTTCCAATGGCATCCTTGCTGCTTCAGCCCTGTTTCACTTCTCCTCTCTGGAGCTGGTGGAGAACGTCTCAGCTCTGAAGAGGGTGGAGGTAGAGGCGTGTGTGAGGTGGATGGTGCCATTCGCCATGGCGCTGCGGGAGGTCGGTGGCTCGTCCATGAAGACGTTCACAGGAATCCCTGCAGATGACATGCACAACATCCAGACACATGCCTCCTACATTACATGGCTGGACAAGGCCGGCTCTTACCAGGATGCAGATTTGAAGCAACACGGCAACTGTCCGGTACCTTCCGGCGTCCTGACTCCCCCGCAGAGCAGTGAGAAAACTGAAGAGTTGGTCCGATTGGATACCGCAGTGCTGAAAATCAGGCCCAGGATTCGTACTCCATCCCCGCAATGCCGCCTCCAAAGTAGTGAAGCAAACACTGAAACTGACAAGACGACAGAAATTGCGAATTAG

Function

symbol description
ccne1 Enables kinase activity. Predicted to be involved in G1/S transition of mitotic cell cycle and regulation of cyclin-dependent protein serine/threonine kinase activity. Predicted to act upstream of or within cell division and regulation of cell cycle. Predicted to be part of cyclin E1-CDK2 complex. Predicted to be active in centrosome; cytoplasm; and nucleus. Is expressed in anterior axial hypoblast; intestine; nervous system; notochord; and polster. Human ortholog(s) of this gene implicated in breast adenocarcinoma. Orthologous to human CCNE1 (cyclin E1).

NR:

description
G1/S-specific cyclin-E1

GO: NA

KEGG:

id description
K06626 CCNE; G1/S-specific cyclin-E1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039794560.1 True 2620 mRNA 0.46 12 5630622 5642701
XM_039794561.1 False 2051 mRNA 0.51 12 5631560 5643404

Neighbor

gene id symbol gene type direction distance location
znf536 znf536,LOC102211462 coding downstream 286414 5058534 ~ 5344208 (-)
znf507 NA coding downstream 1255324 4351498 ~ 4375298 (-)
dpy19l3 dpy19l3 coding downstream 1297102 4265244 ~ 4333520 (-)
dhcr7 dhcr7 coding downstream 2029189 3590280 ~ 3601433 (-)
LOC120555474 NA coding downstream 2154730 3459107 ~ 3475892 (-)
si:ch211-260e23.9 LOC104921431 coding upstream 10050 5653454 ~ 5663254 (-)
LOC120555531 LOC106909328 coding upstream 395021 6038425 ~ 6050689 (-)
LOC120555530 NA coding upstream 417214 6060618 ~ 6067226 (-)
LOC120555529 NA coding upstream 427196 6070600 ~ 6079167 (-)
LOC120555532 NA coding upstream 470807 6114211 ~ 6126128 (-)
G25592 NA non-coding downstream 4963 5625456 ~ 5625659 (-)
LOC120556161 NA non-coding downstream 6743 5574792 ~ 5623879 (-)
LOC120556144 NA non-coding downstream 705614 4923506 ~ 4925008 (-)
G25566 NA non-coding downstream 793350 4836633 ~ 4837272 (-)
G25544 NA non-coding downstream 922921 4707411 ~ 4707701 (-)
G25612 NA non-coding upstream 30956 5674360 ~ 5676297 (-)
G25637 NA non-coding upstream 112106 5755510 ~ 5756425 (-)
G25644 NA non-coding upstream 157393 5800797 ~ 5807098 (-)
G25646 NA non-coding upstream 171075 5814479 ~ 5814684 (-)
G25667 NA non-coding upstream 232849 5876253 ~ 5878018 (-)
G25228 NA other downstream 3353531 2275475 ~ 2277091 (-)
cep89 NA other downstream 3889783 1664770 ~ 1740839 (-)
LOC120556047 abcc12,LOC102304683,LOC101479372,LOC102203605 other downstream 3988274 1587544 ~ 1642348 (-)
LOC120556048 abcc12,LOC101479372,LOC101076737,LOC102203605,LOC100701509,LOC102304683 other downstream 4074976 1510165 ~ 1555646 (-)
LOC120555898 mctp2 other downstream 4173514 1410674 ~ 1457108 (-)
LOC120556425 ap2a2,LOC104921433,LOC104965011 other upstream 36638 5680042 ~ 5717433 (-)
LOC120555534 LOC103369663 other upstream 512818 6156222 ~ 6167529 (-)
ankdd1a ankdd1a other upstream 679873 6323277 ~ 6346561 (-)
pop4 pop4,LOC105418436,LOC104960843 other upstream 865855 6509259 ~ 6524355 (-)
tpcn2 tpcn2 other upstream 890638 6534042 ~ 6590639 (-)

Expression


Co-expression Network