lins1


Basic Information

Item Value
gene id lins1
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 9632007 ~ 9642958 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039794581.1
aagaagagcagctgcagcagcagcagcagcagcagcagtagccgCCGCCACaacaccatagacagtatatgacTTTAACTACTGTTGTTTAATTACTATTAATAGTAACAGTCTGTGGTTTCACACGGAAGAGGCAGAACCATGGAACACTCAGCGAGCTGCAGAGACCTCTCCACCATGAGAGAGCGCTTTGACTGTCTGACAGAGGCGTACGCATGTTTTCTGATGGGAACATGCCCCAGCCAATGTGTGGCCTGCGTGATATTTTCCGGACTGGTCCCCGGCGAGGTCAGAGAGTGTGCTCCTTCCGAGAATCGCCGTGTGAACAGCGCGGAGCTGAGCTACATCAGTGTGACTCTGGTGGAGAAGATTACCTCCAACCTGACGTCTCGCAGCCTGTCTCCAGCAGTCACCTTATACTGCGTGGAGATGCTGACGGTGTTGTTTCAAGACATGGATCTCATGTCACTACTTATGCAGCAGTTCCAGGCTGAGGACCAGATTATCTCACACCTGGCTGCAAAGACTGTATCAACGTGGGTGctctatcagctccacaaatcTGGTACAGTCAGTCCTGTCTGGCAGAAGAAGTGTGTGCAGGCATTTTACATCTCACTCCCCGGTCCCGAATTGGACACATGTCTGTGGTCACTGAATGAAGTCTTAAAACAACTTCTTAAAGGAGCTCATCGAGAAATCCTTGGGAAACTTCTGGCAGCTTTTGACTCCAGCCTAAGTACTCTATGTTCAAAGTTTCTCCCTAAGGAGAGAGACAAGACAACGCAGTGTTTGGTGGAtcttcccagcagcagcagcggacGCTGGGGAACAACCTTCTGCCTCCTGCTGgacctgctggagctgctgacTGCATGCAGTGTGATATGTGGAGCTGGCATCTGTCTGGAGAGTCCGAGAATGACCTATGTTCACTCCTCAGCGCTCCTGATGACAATCAGCTGCTCCTCAGAGTATTTTGTCAAAAAGCGAGCGCTGCTGCTTCTGAAGAGAGCCGTTCTTCAGAAGGCCGGAGAGGATTGGTCTTTAGGAGAAGTGCTGCTCACTGGGCTGAAACACAAGCACTTCGACGCGGATATGAGTGTGCTGTCTCAGAGTGTGTTAACAGCCATGGCTACTGATTGGTTACACAGTGTTCAAGTGGAGTCTTCCTCATTCTTTGGGGGGACCAGATGCATCAGAGGGAAAGAAGGTCAGAAACCAGACTGTGTGATGCTGAGAGCTGTCAGCCTGCTTCTTCTCAAGTCCATGGAGCTTCACATACAAACAGCTGGGGGAACAGCAGGGGTAGACAGTGCCACCGAGGTTTCTGGGTATCTGCAGAGTCTGTGGGGTTTCCTGAGGCGGTGCAGTGTCCAGCTGACAGAGAACACTCATCGGTGCTGCTGGGTCAGCCTGCTGTTTGGAGAACAGGACGACGACATGATGGAGACCGCCAAAGCTTTGTTTTCCATATTTCTCCATCACAGAATGTGTTCTGGGCTGGATGACTTTGCTGTGTTGGAGGCGGCCTGTGCCTCTGGCTGCAACCCTCACTGCCActtcctgctgctgcttcagagcATCTCCTTCGACCACAGCATCCTCCTGGACTTCCTCATTTCCATTGAAACCTGCTTCCTGGAGTACTTTGTGCGATACCTCAAGTTCCTGCGAGCAGATTGGCAGGGTTTCACTGCAGCGTGCGGAAGAATCAGCTCGCCACATTTTCATCTCTCACTGCAGCAGTCTGTTACTGCCTTATGTGCTGCTGATACTTTAAAGGTGACGTGCAAAGGTGAGCCAGATCGGGTTAAATTCAGCTCCTGTGCCCAGTCCACAGGTGTAACTTCACAAGTGGGAAGGGTCAGTTTGGCTGCTGGTTTTCACCTGGTAGAGTATGATAGTTCTGACGAGTCTGATCCAGAGAACATGGAGGTATCTCAGGATGAACCAGCGGCGTCTGTATGTGACAAAAGTACATTTAGTGCCTTGGATGTGAAACAAGAGATCAGTGGACCACCAGTACCTATCAGGCAGAAACAATATGAGGCATCTGACTCAACAGGATTACTGAGTCGACCTAACTCCACTCTGGAAAGAAGAGCAGAAGGGCCATCCCTGCTGGTGTTGCAGAGTGAGCAAACATCCGGTCCAAACATGGCGCCTCAGCCGGGACAGGAGGCCTGGGAAACATTAGCCAGAGCAGTCATCTGTATGTCAGAGCTCAGAGAGGTGGTGACCAGGCTGCAGACAAATAAACTCTTCCCATACAACCCATCTTCACTCCTGAAGCTCTTAGCACAAGTAGAGAACTGTTCCAAGCTATCGCATCTCTTACATTTCAATAAATGATAAAGATGTATAATATGTTTTGTGAAGTGGTTTGGAAGCTAAATTAAAATGGTCCAGTGTTTTAAGTTACTA
>XM_039794583.1
aagaagagcagctgcagcagcagcagcagcagcagcagtagccgCCGCCACaacaccatagacagtatatgacTTTAACTACTGTTGTTTAATTACTATTAATAGTAACAGTCTGTGGTTTCACACGGAAGAGGCAGAACCATGGAACACTCAGCGAGCTGCAGAGACCTCTCCACCATGAGAGAGCGCTTTGACTGTCTGACAGAGGCGTACGCATGTTTTCTGATGGGAACATGCCCCAGCCAATGTGTGGCCTGCGTGATATTTTCCGGACTGGTCCCCGGCGAGGTCAGAGAGTGTGCTCCTTCCGAGAATCGCCGTGTGAACAGCGCGGAGCTGAGCTACATCAGTGTGACTCTGGTGGAGAAGATTACCTCCAACCTGACGTCTCGCAGCCTGTCTCCAGCAGTCACCTTATACTGCGTGGAGATGCTGACGGTGTTGTTTCAAGACATGGATCTCATGTCACTACTTATGCAGCAGTTCCAGGCTGAGGACCAGATTATCTCACACCTGGCTGCAAAGACTGTATCAACGTGGGTGctctatcagctccacaaatcTGGTACAGTCAGTCCTGTCTGGCAGAAGAAGTGTGTGCAGGCATTTTACATCTCACTCCCCGGTCCCGAATTGGACACATGTCTGTGGTCACTGAATGAAGTCTTAAAACAACTTCTTAAAGGAGCTCATCGAGAAATCCTTGGGAAACTTCTGGCAGCTTTTGACTCCAGCCTAAGTACTCTATGTTCAAAGTTTCTCCCTAAGGAGAGAGACAAGACAACGCAGTGTTTGGTGGAtcttcccagcagcagcagcggacGCTGGGGAACAACCTTCTGCCTCCTGCTGgacctgctggagctgctgacTGCATGCAGTGTGATATGTGGAGCTGGCATCTGTCTGGAGAGTCCGAGAATGACCTATGTTCACTCCTCAGCGCTCCTGATGACAATCAGCTGCTCCTCAGAGTATTTTGTCAAAAAGCGAGCGCTGCTGCTTCTGAAGAGAGCCGTTCTTCAGAAGGCCGGAGAGGATTGGTCTTTAGGAGAAGTGCTGCTCACTGGGCTGAAACACAAGCACTTCGACGCGGATATGAGTGTGCTGTCTCAGAGTGTGTTAACAGCCATGGCTACTGATTGGTTACACAGTGTTCAAGTGGAGTCTTCCTCATTCTTTGGGGGGACCAGATGCATCAGAGGGAAAGAAGGTCAGAAACCAGACTGTGTGATGCTGAGAGCTGTCAGCCTGCTTCTTCTCAAGTCCATGGAGCTTCACATACAAACAGCTGGGGGAACAGGGGTAGACAGTGCCACCGAGGTTTCTGGGTATCTGCAGAGTCTGTGGGGTTTCCTGAGGCGGTGCAGTGTCCAGCTGACAGAGAACACTCATCGGTGCTGCTGGGTCAGCCTGCTGTTTGGAGAACAGGACGACGACATGATGGAGACCGCCAAAGCTTTGTTTTCCATATTTCTCCATCACAGAATGTGTTCTGGGCTGGATGACTTTGCTGTGTTGGAGGCGGCCTGTGCCTCTGGCTGCAACCCTCACTGCCActtcctgctgctgcttcagagcATCTCCTTCGACCACAGCATCCTCCTGGACTTCCTCATTTCCATTGAAACCTGCTTCCTGGAGTACTTTGTGCGATACCTCAAGTTCCTGCGAGCAGATTGGCAGGGTTTCACTGCAGCGTGCGGAAGAATCAGCTCGCCACATTTTCATCTCTCACTGCAGCAGTCTGTTACTGCCTTATGTGCTGCTGATACTTTAAAGGTGACGTGCAAAGGTGAGCCAGATCGGGTTAAATTCAGCTCCTGTGCCCAGTCCACAGGTGTAACTTCACAAGTGGGAAGGGTCAGTTTGGCTGCTGGTTTTCACCTGGTAGAGTATGATAGTTCTGACGAGTCTGATCCAGAGAACATGGAGGTATCTCAGGATGAACCAGCGGCGTCTGTATGTGACAAAAGTACATTTAGTGCCTTGGATGTGAAACAAGAGATCAGTGGACCACCAGTACCTATCAGGCAGAAACAATATGAGGCATCTGACTCAACAGGATTACTGAGTCGACCTAACTCCACTCTGGAAAGAAGAGCAGAAGGGCCATCCCTGCTGGTGTTGCAGAGTGAGCAAACATCCGGTCCAAACATGGCGCCTCAGCCGGGACAGGAGGCCTGGGAAACATTAGCCAGAGCAGTCATCTGTATGTCAGAGCTCAGAGAGGTGGTGACCAGGCTGCAGACAAATAAACTCTTCCCATACAACCCATCTTCACTCCTGAAGCTCTTAGCACAAGTAGAGAACTGTTCCAAGCTATCGCATCTCTTACATTTCAATAAATGATAAAGATGTATAATATGTTTTGTGAAGTGGTTTGGAAGCTAAATTAAAATGGTCCAGTGTTTTAAGTTACTA

Function

GO: NA

KEGG:

id description
K22533 LINS1; protein Lines

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039794581.1 True 2427 mRNA 0.50 6 9632007 9642958
XM_039794583.1 False 2424 mRNA 0.50 6 9632007 9642958

Neighbor

gene id symbol gene type direction distance location
LOC120556464 NA coding upstream 335290 9261211 ~ 9296717 (+)
abhd17c abhd17c,LOC102793890,LOC100694079 coding upstream 540497 9056333 ~ 9091510 (+)
mesd mesdc2 coding upstream 881127 8745162 ~ 8750880 (+)
stard5 stard5 coding upstream 1010295 8604276 ~ 8621712 (+)
LOC120556467 tmc3 coding upstream 1030329 8545261 ~ 8601678 (+)
lrrk1 lrrk1 coding downstream 218194 9861152 ~ 10096639 (+)
LOC120555943 LOC103372586 coding downstream 782205 10425163 ~ 10465554 (+)
LOC120555947 hnrnpab,LOC100707314,LOC102779500,LOC101480042 coding downstream 841505 10484463 ~ 10485311 (+)
LOC120555948 LOC103462314 coding downstream 884880 10527838 ~ 10609081 (+)
LOC120555949 NA coding downstream 1098752 10741710 ~ 10745326 (+)
G26347 NA non-coding upstream 23010 9606743 ~ 9608997 (+)
G26335 NA non-coding upstream 158907 9460917 ~ 9473100 (+)
G26297 NA non-coding upstream 331800 9299488 ~ 9300207 (+)
G26276 NA non-coding upstream 387554 9240665 ~ 9244453 (+)
G26273 NA non-coding upstream 393442 9236352 ~ 9238565 (+)
G26367 NA non-coding downstream 79265 9722223 ~ 9722683 (+)
G26368 NA non-coding downstream 84234 9727192 ~ 9727740 (+)
G26386 NA non-coding downstream 103179 9746137 ~ 9791753 (+)
G26391 NA non-coding downstream 151011 9793969 ~ 9794192 (+)
G26453 NA non-coding downstream 454341 10097299 ~ 10099084 (+)
adamts17 adamts17 other upstream 27545 9391108 ~ 9604462 (+)
cers3a cers3,LOC102798777 other upstream 253396 9333229 ~ 9378611 (+)
G26236 NA other upstream 476664 9068729 ~ 9155343 (+)
G26205 NA other upstream 871706 8753701 ~ 8760301 (+)
LOC120556365 LOC102793592,LOC103366350,LOC101487888,LOC102307622,LOC100694289 other upstream 2626329 6993956 ~ 7005678 (+)
asb7 asb7,LOC102792420 other downstream 10620 9653578 ~ 9677027 (+)
aldh1a3 aldh1a3,LOC106562593,LOC103357544,LOC104941118 other downstream 171739 9814697 ~ 9860000 (+)
lto1 oraov1 other downstream 2260314 11903272 ~ 11912722 (+)
G27086 NA other downstream 3466799 13109757 ~ 13110339 (+)
LOC120556202 NA other downstream 3592277 13235235 ~ 13237819 (+)

Expression


Co-expression Network