lctla (LOC104947911,LOC103368870,LOC100693012,LOC101473106,LOC102204643)


Basic Information

Item Value
gene id lctla
gene name LOC104947911,LOC103368870,LOC100693012,LOC101473106,LOC102204643
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 42630224 ~ 42643898 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039794626.1
GAGTGAGGCAGGCCGGGGCTGAGACAGAGGCTGGGCAAAGGGGACAGATGTAGGGAGAGATACAGAACACAGGCACTGGCAAGAGGACTCTCAGGCGAACTTTACATTTTCCGATTATACTTCTTATCTCGGATATCTTTTACACCTCTGAAGATAACACAACAGCTTGAAATGTCGCTCATCCTGACTGTGCTGGACAAGCTGGCTTACTTTCTGTCTCTGATAGCGTTTTGTGTCAGCGTGTCTTACAGCTGGCTGAAATGAAACTAGATTCTTCCCTTTCCAAATCCACGTGCTCTGATAACTGACCGGGTGCTTTTTTCACTGGATGTTTAACAAATGATCCTGTTGAGTTAGGATGCTTTTACTCGAAACCTGTGGACAGCTGCCACCTCTGCGTGTAACTGAAGACAGTAAGCTCTTTGCCAAAGACCACGATGCTGCAGCGGTGCATCCTGAGGCCGTACCATGTGCTTGCTATGGTGCTGTGTGTGTCAGCCGGGGAGGACTTTGACTGGACCAAGAATGAGAGGACATCTTTCTACTACGGCACCTTCCCAACTGGTTTCTCCTGGGGAGCTGGCACCTCTGCCTACCAGACCGAAGGAGCTTGGAACATAGACGGCAAAGGAATGAGCATCTGGGATGCATTTGCCCACAAAAAGGGGAAAATTGTCGCAAATGACACGGGAGACACCTCGTGTGAGGGCTACTACAGATTCAAGgATGACATCACCTTGATGAAGGACATGAAGCTGAATCATTATCGTTTCTCCATCTCCTGGCCGAGGATTTTACCAAGCGGACTTAAAAGTGAACACATCAACGAGAAAGGAATCAAATATTACGATGACCTGATTAACATGCTGCTGGACAATAACATCACACCCATTGTTACTTTGTACCACTGGGATTTACCGCAGttctTACAGGAGAAGTACGGCGGCTGGCAGAACGTCTCCATGGTGAACCACTTCAACGACTTTGCAAACTTATGCTTTGAAAGATTTGGAAAGAAAGTGAAGTACTGGATCACTTTCAACAATCCGTGGTCCATTGCTGTGGAGGGATATGAAACAGGGGAACATGCACCCGGACTGAAGCTAAAGGGAACCGGAGCTTACAAAGCTGCCCACCACATCATCAAGGCACATGCTAAGGTTTGGCACACGTATGACATGCAGTGGCGAAGCaaacaaaaaggcctGGTTGGGATCTCGCTAACAGCAGACTGGGGGGAACCAGTGGACATCACCAACCAGAGGGACattgaagcagcagagagatACATCCAGTTCTACATGGGATGGTTTGCTACTCCCATCTTCAACGGAGACTACCCCCAGGTTATGAAAGATTACATCGGCAGGAAGAGTGGCCAGCAGGGCCTGGGAGCTTCACGGCTGCCCGTCTTCTCGCCTCAGGAGAAGAGTTACATCAAGGGAACCTGTGATTTCCTGGGCCTCGGCCATTTCACGACTCGCTACGTCACCCTGAAGAATTACCCATCAGGCCTCGGAGACAGCTACTTTGCAGATCGAGACCTTGCTGAGCTGGTTGACCCAAAATGGCCTGATCCAGGCTCTGAATGGCTCTATTCTGTTCCCTGGGGCTTCAGACGCCTGTTGAACTTTGTCAAGACTCAGTATGGAAACCCCATGATATACGTGACAGAAAACGGCGTGTCCGAGAAAATGCTCTGCACCGATCTCTGTGATGACTGGAGAATGCAGTACTTCAAAGACTACATCGATGAAATGCTCAAAGCGATTAAAGATGGCGTGAATGTGAAGGGTTACACAGCCTGGTCTCTCCTCGACAACTTTGAGTGGGATGAAGGGTACTCCGAGAGGTTCGGACTCTACTACGTCGACTTcaggaacaaaaacaaaccacgCTACCCGAAGGCCTCTGTCCAGTTCTATAAACGCATCATCAGCTCCAATGGCTTTCCCAATCAGAGAGAGGTGGAGAGTTGGAAGAGGAAAGCCGTAGAGACTTGCTCCTCCAGTAACCAGCTCCTGGCTGCAGATCCACTGATAGGCCACATGGAGATGGTTACAGAGATTGTGGTTCCCACCGTGTGCACGCTCTGCATCCTCCTCAGTGCAGTCTTCCTCATGTTCCTGCTGCGTGGACGCATCtgaaaacacacgcacacacacacacgattctGAGAGTGACTTCAAAGCTGTGAAACTTCATCCTGTCAAGAGCATTTTGTTGATTTAACTGTCTGCTGTTCCGTTTTGAATAAACACTTTTCCAGGTTCTCACAATTGAGTCAAATTAGCCGGTAGCTGTCACAATTCTAGAAGAATGAATTCAAGCTTggtatattactattatttcatttttttaacaaactggTCTTGTGTGGTTTTTGAGTAAGCTACTCAAACTAGCTGCAGAGAGGAGATGGTTTCTTGTCAACAAGTTTGTAAAATTAAGAAATGAGAGTGAAGGGTTGTACTTTGTCTCATACACttcaataaatcaatatttaaGACTTGAA
>XM_039794628.1
GGACGCTTCACtcggtttttgtttttgtaacattGGCTCTGAACCTGTCGGTGACACTGGGGGAACAGTAACTGGGTCCAGAAGCTTGGGGACGTTTCCTGCATTTTGGAGCAGTTTCCAGCGGAGACAAATGCAGGACGTGCAGCAGGTGTAACTGAAGACAGTAAGCTCTTTGCCAAAGACCACGATGCTGCAGCGGTGCATCCTGAGGCCGTACCATGTGCTTGCTATGGTGCTGTGTGTGTCAGCCGGGGAGGACTTTGACTGGACCAAGAATGAGAGGACATCTTTCTACTACGGCACCTTCCCAACTGGTTTCTCCTGGGGAGCTGGCACCTCTGCCTACCAGACCGAAGGAGCTTGGAACATAGACGGCAAAGGAATGAGCATCTGGGATGCATTTGCCCACAAAAAGGGGAAAATTGTCGCAAATGACACGGGAGACACCTCGTGTGAGGGCTACTACAGATTCAAGgATGACATCACCTTGATGAAGGACATGAAGCTGAATCATTATCGTTTCTCCATCTCCTGGCCGAGGATTTTACCAAGCGGACTTAAAAGTGAACACATCAACGAGAAAGGAATCAAATATTACGATGACCTGATTAACATGCTGCTGGACAATAACATCACACCCATTGTTACTTTGTACCACTGGGATTTACCGCAGttctTACAGGAGAAGTACGGCGGCTGGCAGAACGTCTCCATGGTGAACCACTTCAACGACTTTGCAAACTTATGCTTTGAAAGATTTGGAAAGAAAGTGAAGTACTGGATCACTTTCAACAATCCGTGGTCCATTGCTGTGGAGGGATATGAAACAGGGGAACATGCACCCGGACTGAAGCTAAAGGGAACCGGAGCTTACAAAGCTGCCCACCACATCATCAAGGCACATGCTAAGGTTTGGCACACGTATGACATGCAGTGGCGAAGCaaacaaaaaggcctGGTTGGGATCTCGCTAACAGCAGACTGGGGGGAACCAGTGGACATCACCAACCAGAGGGACattgaagcagcagagagatACATCCAGTTCTACATGGGATGGTTTGCTACTCCCATCTTCAACGGAGACTACCCCCAGGTTATGAAAGATTACATCGGCAGGAAGAGTGGCCAGCAGGGCCTGGGAGCTTCACGGCTGCCCGTCTTCTCGCCTCAGGAGAAGAGTTACATCAAGGGAACCTGTGATTTCCTGGGCCTCGGCCATTTCACGACTCGCTACGTCACCCTGAAGAATTACCCATCAGGCCTCGGAGACAGCTACTTTGCAGATCGAGACCTTGCTGAGCTGGTTGACCCAAAATGGCCTGATCCAGGCTCTGAATGGCTCTATTCTGTTCCCTGGGGCTTCAGACGCCTGTTGAACTTTGTCAAGACTCAGTATGGAAACCCCATGATATACGTGACAGAAAACGGCGTGTCCGAGAAAATGCTCTGCACCGATCTCTGTGATGACTGGAGAATGCAGTACTTCAAAGACTACATCGATGAAATGCTCAAAGCGATTAAAGATGGCGTGAATGTGAAGGGTTACACAGCCTGGTCTCTCCTCGACAACTTTGAGTGGGATGAAGGGTACTCCGAGAGGTTCGGACTCTACTACGTCGACTTcaggaacaaaaacaaaccacgCTACCCGAAGGCCTCTGTCCAGTTCTATAAACGCATCATCAGCTCCAATGGCTTTCCCAATCAGAGAGAGGTGGAGAGTTGGAAGAGGAAAGCCGTAGAGACTTGCTCCTCCAGTAACCAGCTCCTGGCTGCAGATCCACTGATAGGCCACATGGAGATGGTTACAGAGATTGTGGTTCCCACCGTGTGCACGCTCTGCATCCTCCTCAGTGCAGTCTTCCTCATGTTCCTGCTGCGTGGACGCATCtgaaaacacacgcacacacacacacgattctGAGAGTGACTTCAAAGCTGTGAAACTTCATCCTGTCAAGAGCATTTTGTTGATTTAACTGTCTGCTGTTCCGTTTTGAATAAACACTTTTCCAGGTTCTCACAATTGAGTCAAATTAGCCGGTAGCTGTCACAATTCTAGAAGAATGAATTCAAGCTTggtatattactattatttcatttttttaacaaactggTCTTGTGTGGTTTTTGAGTAAGCTACTCAAACTAGCTGCAGAGAGGAGATGGTTTCTTGTCAACAAGTTTGTAAAATTAAGAAATGAGAGTGAAGGGTTGTACTTTGTCTCATACACttcaataaatcaatatttaaGACTTGAA
>XM_039794629.1
GAGTGAGGCAGGCCGGGGCTGAGACAGAGGCTGGGCAAAGGGGACAGATGTAGGGAGAGATACAGAACACAGGCACTGGCAAGAGGACTCTCAGGCGAACTTTACATTTTCCGATTATACTTCTTATCTCGGATATCTTTTACACCTCTGAAGATAACACAACAGCTTGAAATGTCGCTCATCCTGACTGTGCTGGACAAGCTGGCTTACTTTCTGTCTCTGATAGCGTTTTGTGTCAGCGTGTCTTACAGCTGGCTGAAATGAAACTAGATTCTTCCCTTTCCAAATCCACGTGCTCTGATAACTGACCGGGTGCTTTTTTCACTGGATGTTTAACAAATGATCCTGTTGAGTTAGGATGCTTTTACTCGAAACCTGTGGACAGCTGCCACCTCTGCGTGTAACTGAAGACAGTAAGCTCTTTGCCAAAGACCACGATGCTGCAGCGGTGCATCCTGAGGCCGTACCATGTGCTTGCTATGGTGCTGTGTGTGTCAGCCGGGGAGGACTTTGACTGGACCAAGAATGAGAGGACATCTTTCTACTACGGCACCTTCCCAACTGGTTTCTCCTGGGGAGCTGGCACCTCTGCCTACCAGACCGAAGGAGCTTGGAACATAGACGGCAAAGGAATGAGCATCTGGGATGCATTTGCCCACAAAAAGGGGAAAATTGTCGCAAATGACACGGGAGACACCTCGTGTGAGGGCTACTACAGATTCAAGgATGACATCACCTTGATGAAGGACATGAAGCTGAATCATTATCGTTTCTCCATCTCCTGGCCGAGGATTTTACCAAGCGGACTTAAAAGTGAACACATCAACGAGAAAGGAATCAAATATTACGATGACCTGATTAACATGCTGCTGGACAATAACATCACACCCATTGTTACTTTGTACCACTGGGATTTACCGCAGttctTACAGGAGAAGTACGGCGGCTGGCAGAACGTCTCCATGGTGAACCACTTCAACGACTTTGCAAACTTATGCTTTGAAAGATTTGGAAAGAAAGTGAAGTACTGGATCACTTTCAACAATCCGTGGTCCATTGCTGTGGAGGGATATGAAACAGGGGAACATGCACCCGGACTGAAGCTAAAGGGAACCGGAGCTTACAAAGCTGCCCACCACATCATCAAGGCACATGCTAAGGTTTGGCACACGTATGACATGCAGTGGCGAAGCaaacaaaaaggcctGGTTGGGATCTCGCTAACAGCAGACTGGGGGGAACCAGTGGACATCACCAACCAGAGGGACattgaagcagcagagagatACATCCAGTTCTACATGGGATGGTTTGCTACTCCCATCTTCAACGGAGACTACCCCCAGGTTATGAAAGATTACATCGGCAGGAAGAGTGGCCAGCAGGGCCTGGGAGCTTCACGGCTGCCCGTCTTCTCGCCTCAGGAGAAGAGTTACATCAAGGGAACCTGTGATTTCCTGGGCCTCGGCCATTTCACGACTCGCTACGTCACCCTGAAGAATTACCCATCAGGCCTCGGAGACAGCTACTTTGCAGATCGAGACCTTGCTGAGCTGGTTGACCCAAAATGGCCTGATCCAGGCTCTGAATGGCTCTATTCTGTTCCCTGGGGCTTCAGACGCCTGTTGAACTTTGTCAAGACTCAGTATGGAAACCCCATGATATACGTGACAGAAAACGGCGTGTCCGAGAAAATGCTCTGCACCGATCTCTGTGATGACTGGAGAATGCAGTACTTCAAAGACTACATCGATGAAATGCTCAAAGCGATTAAAGATGGCGTGAATGTGAAGGGTTACACAGCCTGGTCTCTCCTCGACAACTTTGAGTGGGATGAAGGGTACTCCGAGAGGTTCGGACTCTACTACGTCGACTTcaggaacaaaaacaaaccacgCTACCCGAAGGCCTCTGTCCAGTTCTATAAACGCATCATCAGCTCCAATGGCTTTCCCAATCAGAGAGAGGTGGAGAGTTGGAAGAGGAAAGCCGTAGAGACTTGCTCCTCCAGTAACCAGCTCCTGGCTGCAGCTAGAAGAAAATCCCAGGGAAATCAGGAACATGCAGGAATGCAAAAGGCTTGGCCAGTGCATGATGAAGTTTAGATCCACTGATAGGCCACATGGAGATGGTTACAGAGATTGTGGTTCCCACCGTGTGCACGCTCTGCATCCTCCTCAGTGCAGTCTTCCTCATGTTCCTGCTGCGTGGAC

Function

NR:

description
PREDICTED: lactase-like protein isoform X1

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039794626.1 True 2515 mRNA 0.48 14 42630224 42643727
XM_039794628.1 False 2265 mRNA 0.48 14 42630224 42643898
XM_039794629.1 False 2213 mRNA 0.50 15 42630600 42643727

Neighbor

gene id symbol gene type direction distance location
tipin NA coding downstream 1140 42618892 ~ 42629084 (-)
LOC120556187 LOC103365825,LOC103378970 coding downstream 40088 42407423 ~ 42590136 (-)
dapk2a LOC104966057,LOC103365817 coding downstream 266392 42349696 ~ 42363832 (-)
herc1 herc1 coding downstream 288882 42265493 ~ 42341342 (-)
pole3 pole3 coding downstream 579864 42043189 ~ 42050360 (-)
LOC120555681 ccnb2,LOC103368869,LOC100692470 coding upstream 14134 42658032 ~ 42661872 (-)
cars1 cars coding upstream 20307 42664205 ~ 42687905 (-)
arfgap2 arfgap2 coding upstream 60302 42704200 ~ 42722874 (-)
LOC120556519 shank2,LOC102783952 coding upstream 373823 43017721 ~ 43305187 (-)
si:ch211-220f16.2 NA coding upstream 694756 43338654 ~ 43390335 (-)
G33735 NA non-coding downstream 12857 42615624 ~ 42617367 (-)
G33689 NA non-coding downstream 401455 42210287 ~ 42228769 (-)
G33690 NA non-coding downstream 416127 42211568 ~ 42214097 (-)
G33569 NA non-coding downstream 490370 42105398 ~ 42139854 (-)
G33568 NA non-coding downstream 514763 42097785 ~ 42115461 (-)
G33740 NA non-coding upstream 18725 42662623 ~ 42691804 (-)
G33753 NA non-coding upstream 110557 42754455 ~ 42756824 (-)
G33759 NA non-coding upstream 174910 42818808 ~ 42911206 (-)
G33763 NA non-coding upstream 225963 42869861 ~ 42897814 (-)
G33793 NA non-coding upstream 326551 42970449 ~ 42972764 (-)
G33711 NA other downstream 228088 42399291 ~ 42402136 (-)
sirt3 sirt3 other downstream 865328 41757627 ~ 41764896 (-)
LOC120556513 NA other downstream 1966567 40661364 ~ 40663657 (-)
G33122 NA other downstream 1967603 40648676 ~ 40662621 (-)
LOC120556146 NA other downstream 2040560 40564241 ~ 40589664 (-)
G33796 NA other upstream 341325 42985223 ~ 42990770 (-)
G33847 NA other upstream 570736 43214634 ~ 43214987 (-)
G33914 NA other upstream 808814 43452712 ~ 43456847 (-)
LOC120556522 LOC103374105,LOC102297981 other upstream 1122793 43766691 ~ 43813225 (-)
G34078 NA other upstream 1396462 44040360 ~ 44089691 (-)

Expression


Co-expression Network