tmod2 (tmod3,LOC102784726,LOC102314562)


Basic Information

Item Value
gene id tmod2
gene name tmod3,LOC102784726,LOC102314562
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 18335550 ~ 18360210 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039794635.1
GTTACCGCCCTTGGGCTGAGTGAGAAATCAAGCACTGAAGACATCGCATTCAGTGGGAAGACGGGCGTTATTTGGAGATTCCTTAGTTAGGTCCCATTAGCCTCAGgtaGCCTCTCCCTGTTCTGGAGCAGTTAGCCTGAGAGGGAACATTGTGGCTGTGGTCTGCTGTTCAGTGTTGCTTAGCAAGCTATAGCCGGCACCATGGCGCTGTCATTCAAGAAGGACCTGGAAAAGTACAAGGATCTCGACGAAGATGAAATCCTCAACAAACTGACGGCGGAGGAGCTCAAACAGCTGGAGACGGCCCTCGAGGAGATAGACCCTGAGAATGCTCTTCTCCCAGCGGGCTTACGTCAGAAGGACCATACAACTAAGACAGCAACAGGATCATTCAACAGGGAAGGCCTTCTCAAGTACCTGGAGAAGGAAGCCATGGAGTACAAGGACAGAGAGGATGTAGTGCCCTTCACTGGGGAAAGAaaagGTAAAGCATTTGTTCCTAAGCAGAAACCAATGGAAACCCGCCAGGAGGAAGTCACAACCCTTGATCCAGAATTAGAGGAAGCCCTGTCAAGCGCCACAGATACAGAACTGTGTGATCTAGCAGCGATCCTGGGTGTTCACACGCTGGTCACCAGTAGTCAGACATATGATGGGACTACATCTAAAGAGGGTTACAACAATGTGATCAAAGGGGAGAAGATGAACCCAGTGTTTGATGAGCCTCCCAATCCCACTAATGTAGAAGAAACTCTGCAGAGGATAAAAAGCAATGACAGCTCCTTAACGGAGGTCAACCTTAACAACATTAAGAACATTCCAATTCCCACACTGAAGGACTTCGCCAAAGCCATGGAGAAGAACACGACCGTCAAGAAGTTCAGCCTGGCAGCAACGCGGAGTAACGACCCCATTGCTGTGgcGTTCAGTGACATGCTGCGAGAGAACAAGACGTTGCGAGCGTTGAACTTGGAGTCCAACTTCATCACCGGGGCAGGGGTGCAGGCTTTGGTTGATGCGTTGCGAGACAACGACACACTCACAGAAATCAAGATAGACAACCAGaggcAGCAGCTGGGTACTACTGTAGAGATGGAGATAGCTAAGATGTTGGAAGAGAACAACAACATAGTGAAGTTTGGCTACCACTTCACCCAGCAAGGACCTCGCTccagagctgctgcagctatcACCAAGAACAATGATCTGGTCCGCAAGAAGCGAGTGGAAGGGGACCAGTAGGGACGAAGCCCAACCTGTCTCCCAGCCAATCCTGTTGTTTCATCTCACCATGTGGAATAATTTCAGCCAATGCCCTGGTCTCATCTCACTGTGTGGAAActttagtcttgtgccaaactGCGGGGCAAGGCGCGCTCAACCAGAACATACATCTGAGAAGAAGGGAAATAACTGGAATTGCCCTCTCCCATTTACATGTTCATActtatgtttattattatgtcGTTATTGAAGGTGTAAATCTGATTTGTTTTTAGTCATTTCATTTcagctgctctttttttttttttttttttagcctttatGTGATCTGTCCAGACTTTTTACttgctttttcccctttttatACTATGCTATAATCATGTGGGATAAACATGAACATTACCAAGTAACAATAACCTCTTTTGAAAAACAATAACTAACATTGAAAGAGCCTTGTATCCAACCATGATAGTTTGAGGCCTAAGCTCCCAGTGGAATACCTGTATTGAATCAGCAGAATGTGTCATTAGAACGATAGGTATATAGCTCTAAAGGTGATCTTAGGCTTAAGCATCAGAATGTGACGTGAAGCAAAGTCGAACCAGTCTGTTAGAGCCACAGCTTACTGGCAGAATAGTTATAATCTAGCGTAGCCATGACTACTGCAAACCTTGTCTGATTTTACAGCTGTAGATACCACAAGTTATCCTAAGGTAACATTAGTCACCATGTGGTTAGATCACTGTTGTACATTCCATCTGCATGGTGGTTTGCAGGTGTTTATTGGAGTTGCCTTGTAAAGCCAGCTTGACTGTCTGGCTGGTTATGTAACGGTTAAGTTTGTGCTGGCCTCAGAACAGATGCTGGCTCGCCCCCTTATATGAATTAAATTCTGTACGTATCAATGCATAATGTTTTTACATTGCTTTACTGTTTTATTCGAACTCAAgagcttgtttttttatatacgGTTCAATTCTGATGTTGGTTATTGTGATCATTCGTATCCCTTAACAATCAGATATAACTAGCTTTGGATATTTTGGATCAAGTAAAAGggggattgtactgtaaaaggAATAGGATATTAACTCAAACAGGCTTTGACCTGCTCTTACAAATGATGCCGTAAAATGTCTGCTCAACACACTGATGCTTAACCATGCCAAAGACTAACACATGCAGTGCTTCAAGTTTCAATATGTAACGTGAGGGTTACTGGTTCAGGTTTTGGCTTTGTCAGCTACAGTCACTTCATTGCAGTACACATCCGGGAAAGGAGTCTGTGGGTTAACAAAAATGATCTATACATTTCTTTAGATCTCATCATGCCATTACGTTTTCTATTTTTGTGGGCCCTTTGTAGCTTAAATGTTTAGCAAGTAGTTCACTAAGATGCGAGGAGAGTTGGCAAACACTTTATGTTTTACTTCTCAGGTTGGGACTATGACGGTTGCGAGATGTTTTCTGTGAACTTTATCTCCCAGATAGAAAGTTTTGTACAGATCTTGAATTAGAATGTTCTACTCCCTCTTTCACACTTTGACTTGGCTCTCAGCACTAACatgtcattcattcattatgtAACTGAAAACAACATGCTACGTGTGCCTCAAACTGAACTTCCTGAGGTACACTAACCTGCTTGAGATGGGTATAACGGGACTAATTCAGGATTACTTGAAACATTGTATATACTGTTTATGTGTAATAGGAACAGTATGCTGGCATGAACATCACTCATGTACGTTACGTTTCTATCGACCAAAAATGTTCTTTCATCCTCACAGCCTCACGTTCCCTGGACAAGAGTTGTATGGCTGAATTCAGTACTTTGGGTCTAATATCTGTGTGCTTCTTCCGTGGTCATATCTGCTActgctatttttcttttttcttggatcttttgtttttacattactgTGCTTTGCTGGTGGACAGTCAGCTTAAGTGGAAAACTGATTTTTGGCCTGGGCTTGTTAAGAATATTCTGTGATTCATAATATACATTCATTGTAAAATGCCATCTCAAATtcaaagtgcacacacacacttttgtatGTGTATACCACCTaaatctttagttttttttgtaccttATAACCCAGGTTTAGACTCAATATAAGGAATATGTACTATTATAAAACCACAAGACTGGTAAAACGCACTGCTGAATATAAGACATCCTcaacaataaatgtttttacatA
>XM_039794637.1
GGCTGAGTGAGAAATCAAGCACTGAAGACATCGCATTCAGTGGGAAGACGGGCGTTATTTGGAGATTCCTTAGTTAGGTCCCATTAGCCTCAGATCTTGGCCAGAAATGTCGTCTCATCATTGAATTCATATGATGCAAGAgtaGCCTCTCCCTGTTCTGGAGCAGTTAGCCTGAGAGGGAACATTGTGGCTGTGGTCTGCTGTTCAGTGTTGCTTAGCAAGCTATAGCCGGCACCATGGCGCTGTCATTCAAGAAGGACCTGGAAAAGTACAAGGATCTCGACGAAGATGAAATCCTCAACAAACTGACGGCGGAGGAGCTCAAACAGCTGGAGACGGCCCTCGAGGAGATAGACCCTGAGAATGCTCTTCTCCCAGCGGGCTTACGTCAGAAGGACCATACAACTAAGACAGCAACAGGATCATTCAACAGGGAAGGCCTTCTCAAGTACCTGGAGAAGGAAGCCATGGAGTACAAGGACAGAGAGGATGTAGTGCCCTTCACTGGGGAAAGAaaagGTAAAGCATTTGTTCCTAAGCAGAAACCAATGGAAACCCGCCAGGAGGAAGTCACAACCCTTGATCCAGAATTAGAGGAAGCCCTGTCAAGCGCCACAGATACAGAACTGTGTGATCTAGCAGCGATCCTGGGTGTTCACACGCTGGTCACCAGTAGTCAGACATATGATGGGACTACATCTAAAGAGGGTTACAACAATGTGATCAAAGGGGAGAAGATGAACCCAGTGTTTGATGAGCCTCCCAATCCCACTAATGTAGAAGAAACTCTGCAGAGGATAAAAAGCAATGACAGCTCCTTAACGGAGGTCAACCTTAACAACATTAAGAACATTCCAATTCCCACACTGAAGGACTTCGCCAAAGCCATGGAGAAGAACACGACCGTCAAGAAGTTCAGCCTGGCAGCAACGCGGAGTAACGACCCCATTGCTGTGgcGTTCAGTGACATGCTGCGAGAGAACAAGACGTTGCGAGCGTTGAACTTGGAGTCCAACTTCATCACCGGGGCAGGGGTGCAGGCTTTGGTTGATGCGTTGCGAGACAACGACACACTCACAGAAATCAAGATAGACAACCAGaggcAGCAGCTGGGTACTACTGTAGAGATGGAGATAGCTAAGATGTTGGAAGAGAACAACAACATAGTGAAGTTTGGCTACCACTTCACCCAGCAAGGACCTCGCTccagagctgctgcagctatcACCAAGAACAATGATCTGGTCCGCAAGAAGCGAGTGGAAGGGGACCAGTAGGGACGAAGCCCAACCTGTCTCCCAGCCAATCCTGTTGTTTCATCTCACCATGTGGAATAATTTCAGCCAATGCCCTGGTCTCATCTCACTGTGTGGAAActttagtcttgtgccaaactGCGGGGCAAGGCGCGCTCAACCAGAACATACATCTGAGAAGAAGGGAAATAACTGGAATTGCCCTCTCCCATTTACATGTTCATActtatgtttattattatgtcGTTATTGAAGGTGTAAATCTGATTTGTTTTTAGTCATTTCATTTcagctgctctttttttttttttttttttagcctttatGTGATCTGTCCAGACTTTTTACttgctttttcccctttttatACTATGCTATAATCATGTGGGATAAACATGAACATTACCAAGTAACAATAACCTCTTTTGAAAAACAATAACTAACATTGAAAGAGCCTTGTATCCAACCATGATAGTTTGAGGCCTAAGCTCCCAGTGGAATACCTGTATTGAATCAGCAGAATGTGTCATTAGAACGATAGGTATATAGCTCTAAAGGTGATCTTAGGCTTAAGCATCAGAATGTGACGTGAAGCAAAGTCGAACCAGTCTGTTAGAGCCACAGCTTACTGGCAGAATAGTTATAATCTAGCGTAGCCATGACTACTGCAAACCTTGTCTGATTTTACAGCTGTAGATACCACAAGTTATCCTAAGGTAACATTAGTCACCATGTGGTTAGATCACTGTTGTACATTCCATCTGCATGGTGGTTTGCAGGTGTTTATTGGAGTTGCCTTGTAAAGCCAGCTTGACTGTCTGGCTGGTTATGTAACGGTTAAGTTTGTGCTGGCCTCAGAACAGATGCTGGCTCGCCCCCTTATATGAATTAAATTCTGTACGTATCAATGCATAATGTTTTTACATTGCTTTACTGTTTTATTCGAACTCAAgagcttgtttttttatatacgGTTCAATTCTGATGTTGGTTATTGTGATCATTCGTATCCCTTAACAATCAGATATAACTAGCTTTGGATATTTTGGATCAAGTAAAAGggggattgtactgtaaaaggAATAGGATATTAACTCAAACAGGCTTTGACCTGCTCTTACAAATGATGCCGTAAAATGTCTGCTCAACACACTGATGCTTAACCATGCCAAAGACTAACACATGCAGTGCTTCAAGTTTCAATATGTAACGTGAGGGTTACTGGTTCAGGTTTTGGCTTTGTCAGCTACAGTCACTTCATTGCAGTACACATCCGGGAAAGGAGTCTGTGGGTTAACAAAAATGATCTATACATTTCTTTAGATCTCATCATGCCATTACGTTTTCTATTTTTGTGGGCCCTTTGTAGCTTAAATGTTTAGCAAGTAGTTCACTAAGATGCGAGGAGAGTTGGCAAACACTTTATGTTTTACTTCTCAGGTTGGGACTATGACGGTTGCGAGATGTTTTCTGTGAACTTTATCTCCCAGATAGAAAGTTTTGTACAGATCTTGAATTAGAATGTTCTACTCCCTCTTTCACACTTTGACTTGGCTCTCAGCACTAACatgtcattcattcattatgtAACTGAAAACAACATGCTACGTGTGCCTCAAACTGAACTTCCTGAGGTACACTAACCTGCTTGAGATGGGTATAACGGGACTAATTCAGGATTACTTGAAACATTGTATATACTGTTTATGTGTAATAGGAACAGTATGCTGGCATGAACATCACTCATGTACGTTACGTTTCTATCGACCAAAAATGTTCTTTCATCCTCACAGCCTCACGTTCCCTGGACAAGAGTTGTATGGCTGAATTCAGTACTTTGGGTCTAATATCTGTGTGCTTCTTCCGTGGTCATATCTGCTActgctatttttcttttttcttggatcttttgtttttacattactgTGCTTTGCTGGTGGACAGTCAGCTTAAGTGGAAAACTGATTTTTGGCCTGGGCTTGTTAAGAATATTCTGTGATTCATAATATACATTCATTGTAAAATGCCATCTCAAATtcaaagtgcacacacacacttttgtatGTGTATACCACCTaaatctttagttttttttgtaccttATAACCCAGGTTTAGACTCAATATAAGGAATATGTACTATTATAAAACCACAAGACTGGTAAAACGCACTGCTGAATATAAGACATCCTcaacaataaatgtttttacatA

Function

symbol description
tmod3 Enables cadherin binding activity involved in cell-cell adhesion. Predicted to be involved in actin filament organization; muscle contraction; and myofibril assembly. Predicted to act upstream of or within actin cytoskeleton organization; erythrocyte development; and positive regulation of mitotic cell cycle phase transition. Located in adherens junction.

NR:

description
PREDICTED: tropomodulin-3

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component
GO:0005523 tropomyosin binding molecular_function

KEGG:

id description
K10370 TMOD; tropomodulin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039794635.1 False 3434 mRNA 0.42 10 18335550 18360210
XM_039794637.1 True 3469 mRNA 0.42 11 18335550 18360197

Neighbor

gene id symbol gene type direction distance location
lysmd2 lysmd2 coding downstream 7762 18321428 ~ 18327788 (-)
gldn gldn,LOC104962729 coding downstream 92540 18237855 ~ 18243010 (-)
sema6dl sema6d coding downstream 394078 17920329 ~ 17941472 (-)
slc24a5 slc24a5 coding downstream 456717 17871826 ~ 17878833 (-)
ctxn2 ctxn2 coding downstream 485232 17844222 ~ 17850318 (-)
usp8 usp8,LOC102785891 coding upstream 79372 18439582 ~ 18451019 (-)
LOC120555694 LOC101077645 coding upstream 96340 18456550 ~ 18466081 (-)
LOC120556233 LOC104953026,LOC102209912,LOC102302305,LOC101469394 coding upstream 111504 18471714 ~ 18482023 (-)
LOC120555642 fsd2 coding upstream 214850 18575060 ~ 18584594 (-)
homer2 homer2 coding upstream 247259 18607469 ~ 18639221 (-)
LOC120555717 scg3 non-coding downstream 14945 18298911 ~ 18320605 (-)
G28094 NA non-coding downstream 378082 17957015 ~ 17957468 (-)
G28080 NA non-coding downstream 446342 17888834 ~ 17889208 (-)
G28077 NA non-coding downstream 464103 17869965 ~ 17871447 (-)
G28069 myef2 non-coding downstream 478043 17854789 ~ 17857507 (-)
G28263 NA non-coding upstream 20969 18381179 ~ 18381522 (-)
G28264 NA non-coding upstream 21768 18381978 ~ 18382379 (-)
G28267 NA non-coding upstream 25321 18385531 ~ 18386608 (-)
G28284 NA non-coding upstream 109603 18469813 ~ 18471450 (-)
G28291 NA non-coding upstream 137639 18497849 ~ 18498089 (-)
G28121 NA other downstream 115000 18218122 ~ 18220550 (-)
c3h15orf48 clg1h15orf48,csgr07h15orf48,LOC103353210,LOC107085327,LOC104951152 other downstream 734160 17599750 ~ 17601390 (-)
G27925 LOC103353204,LOC106512954,LOC102223374,LOC104951141 other downstream 822382 17508123 ~ 17513168 (-)
LOC120556401 LOC104927750,LOC104949847,LOC103353195 other downstream 1051041 17193513 ~ 17284509 (-)
LOC120555730 adamts7 other downstream 1926682 16321963 ~ 16408868 (-)
G28265 NA other upstream 22495 18382705 ~ 18383642 (-)
G28269 mapk6 other upstream 55859 18416069 ~ 18420499 (-)
LOC120556268 btbd1 other upstream 289819 18650029 ~ 18658659 (-)
G28345 NA other upstream 359162 18719372 ~ 18720019 (-)
LOC120555695 NA other upstream 693881 19054091 ~ 19069996 (-)

Expression


Co-expression Network