LOC120555692 (LOC104956759)


Basic Information

Item Value
gene id LOC120555692
gene name LOC104956759
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 18433272 ~ 18439440 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039794655.1
TAATGTCATGAGAGCTGCACTGTGGTTTAAGTGTATCAGTAGGTTGCCAAGATACAGTTGTCTGACAACAATGGATCCCTGGTGATTTACAGGTTCTCATGAGTGTCACAGAGTGCGTGCATCACCTGAGAGCAGaccaatatacacacacacacacacacacacacacaatttgtcAAACACCCATTAGGATAAGAGAAACTCTGCGCTCTGTGTCTTTGTTGTCTTACCCCTTTGTCATCGAACTAAACAGGCTACAGGGAGGAATTTCAGGCACACAGCAATTATGCTTTTGTGGCTTATCTCTTGATTTATCATAGTGGTTTTAGATCAGAGGTCTCTGTTGTGAGACAAGCCGTTGCTATTTTAAGATGGCTCTTTCTTAGCACAAGCAGAGAGGCTAAGATGAAGGCCAAGGCTTTGTCAGTGCGGGAGTGCACCTGGATGTCAGAGGAGTGCCACCTGGTGGATGAGCTGCATGGAGACTCCCAGAGGGACCGCCTGTGTTTACCAAACATCTTCAAGTCCAAAAAAGTGAAGCCGCTTACTAGGATTCAGACTGGACCTACTTACCAGGTCTACCATACAGCCAGGGAGCTCTTGCTGGAAGTGCTGGACAGAGGAGCCGTCCGGAAGTTGATCAGGAGAGCTGCCGGTGGGAAGGCAGGAGCTACCCGTCCGTCATACAGCCAGAGCAGAGAGCCCGGTGCAGATCTCTCTGAGGAGGAGTATGCCGAGGCTTTAACATTGTTCTCTATAGTCCTACAGAGCGGTCTGTCTGTAGGAGAGAACTGCAGATTTGGCTCTGAGCTGACCCTGAAACTGGATGGATGGCAGGGCATCCTGAAGAGAAACAGCTTCCAGACCAACCTGCTGTCTCTGACCAGACTGGAAGATGGAGACAAGTTGGAAGTCCTTTCTGCTTTCTGTAGCCACTTAACCAGGCGCTACCAGGCCTTATACACACCTGGTCACAACCTAAAAGTGAAGAAATACAGACTTTCCATCCAGCAGGGGCCTTGCTCTCTCCATCTAGCCCTCCTCTGTGACATGAGCTCCGGGTTCATTTGTAACATGTATCTGTACTGTCCCGAGCATCTCCAGAGGCAGAGTAGGAAACCTGTGGTTGAGCAGGTGGTCGGACACCTGCTGAGACCTTTTTGCAGCCACAGACACCTGGTTCAGCTGGACAGCTCTGCTTGGATGGAGGGCAGACTCGCAGACATCTTCTCTGGCTTGGGGGTCGATATTGATTTTGTTCCAACTGTTCAAAGATCATCTTCATCTCCACCACTCGTTGAGGACTCACTGTCTCAACCTGTAGCCCACCTGCAGGGCTGGACCGGACCTGCTCTGTTTCCTCTGTCAGATCTGAAGGGAGCAGCGGAAGATGTGTTTCTCCCAGGCATCTGGGTGACACTACATATCATCTGCATCAACACATTTACGCTTCACACTCTGCAGAGACAGGACTCAGGCAGGCAGGTCCACCTGACGGAGTTCACCAGGACTCTGGCCGCAAAGCTGGCTGTGGACAGCAGCATCACTGTGCCTGTTCTGCAACAGCTAAACAGCAGCTCATACCAAGACACAAGTTTAACATATCATTCTAAGCTAAGGATGAATTCCATCAGTGTGGAAAATGAGAAACAAGGCTGCAGCTCGGCAGTGAAGCTGCAGTCGGGCTGGAACAGACCAGGAGTGTGCGGTTTGGATAACTCCGGAAACTCCTGCTACTTAAATGCTGTGTTACAGTGTCTGTGTTCCACTGTGCCCCTCGTGGAGCACCTCCTTCATCAGGACACTCGCAATGAGCTGGGAAGGTCTAAGTGCTGGGTGGCTGGGATGTTTGTCCGCCTGCTGGAGGAGATGTGGCTGGGAAGGAGCTCCAGCTGTGCCCCTGTGGAGGTCAGGTCTGTGCTGTGCTCCATCCTCCCCCAGTTCAACAACCACTCCCAGCAAGACGCCCAGGAACTGCTGCTCTTTCTCCTCAATGCACTACACGACGACCTCAAAAAGGTGGCAAAGCGCCTGATGCACTCCTCAAGACGACAACCGAGACAAGACCAGAATAGAAACTGTGCCAGCGCAGCGGGGGAGTCCAGCACCATTGTCTCACATCTGTTTGAGGGCCAGCTGGGCTACATGACCCTCTGCATGCACTGCAGCcaccagacacacagcacacagacctTCACTGTACTGTCACTGCCAATTCCAACAGACATCATTAAGTGCTCCATTCAGGATTGCCTGTCACTCTTCTTCGAGCAGACTATCCTGACCAGAGGAGAGCAGATGTTGTGTTCGGGGTGTGGGATGAGGAGAGAAACGGCAGTCCTCACTTGTTTGGACAAACCTCCCGAAATCCTAATGTTGCACCTGAAACGGTTTGGTTGTAAGGGGAAGAACCAGGTGAAACTGAGGACGAATGTCGTGTTCTCCATGAGGCTCAATCTCTCCCCGTTTCTATCCAGCTCAGTACAGACCACCTCATATTCTTCATACCGCCTATATGCTGTTGTGaACCACACAGGTCATCTTCACACGGGTCACTACACAGCTCTGTGCCACAACGCCCTGACTCGGACCTGGCACTGTTTTGACGACTTGGCGATCCGAGAGGTACCGGACAGCCTCGTGCAATCTCCAAATGCCTACGTGCTGCTCTACAGCCGTAAGCGCTTCCAAAAACCAAAGATCCACGGACTCTGAGCTCTCCAACCAGCCCGCCAGGGGGCTGAGTCTCAACGTCCTTTTTGTTGGTTTATCGATACTTAAAAGAAATAGTTGTCAATCATGAGTCAACAATGTTTTAGAAGTCCAATGTTATCGGTGAAGTactattttaaaatgcatttaaatctgtcccccccccccccatcagtGGCCTTGCATCAGTCAGACATCACTGATGCTTGTTTTTGTGCTGACTTCACCATAACTGCTCTCCAAATAAATGTAAAGCTGCAGCATTGA

Function

NR:

description
PREDICTED: putative ubiquitin carboxyl-terminal hydrolase 50

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039794655.1 True 2979 mRNA 0.51 7 18433272 18439440

Neighbor

gene id symbol gene type direction distance location
mapk6 mapk6 coding upstream 13722 18403621 ~ 18419550 (+)
leo1 leo1 coding upstream 52926 18362149 ~ 18380346 (+)
scg3 scg3 coding upstream 111968 18306445 ~ 18321304 (+)
tnfaip8l3 tnfaip8l3 coding upstream 137758 18273688 ~ 18295514 (+)
LOC120555996 LOC104920192 coding upstream 180913 18248775 ~ 18252359 (+)
hdc hdc,LOC106587893,LOC103379072 coding downstream 15216 18454656 ~ 18458552 (+)
gatm gatm,LOC102780634 coding downstream 46622 18486062 ~ 18491068 (+)
pde8a pde8a,LOC100690151,LOC102210709,LOC101463592,LOC102780154 coding downstream 66088 18505528 ~ 18557335 (+)
LOC120555641 whamm,LOC102778540 coding downstream 146333 18585773 ~ 18604970 (+)
LOC120555930 NA coding downstream 199842 18639282 ~ 18642799 (+)
LOC120555993 NA non-coding upstream 252071 18004828 ~ 18181201 (+)
G28083 NA non-coding upstream 514076 17918900 ~ 17919196 (+)
G28065 NA non-coding upstream 544055 17888761 ~ 17889217 (+)
G28066 slc24a5,LOC102781271 non-coding upstream 557099 17871746 ~ 17876173 (+)
G27977 NA non-coding upstream 606362 17825864 ~ 17826910 (+)
G28163 usp8,LOC102785891 non-coding downstream 5376 18444816 ~ 18445296 (+)
G28195 homer2 non-coding downstream 167865 18607305 ~ 18615809 (+)
LOC120556026 NA non-coding downstream 406829 18846269 ~ 18847406 (+)
G28393 NA non-coding downstream 614684 19054124 ~ 19055004 (+)
G28394 NA non-coding downstream 618106 19057546 ~ 19057853 (+)
LOC120555788 NA other upstream 689824 17724545 ~ 17743448 (+)
LOC120556001 rbpms2,LOC107381790,LOC103368877,LOC104957780 other upstream 2946821 15475147 ~ 15486451 (+)
LOC120556433 psma4,psa4,LOC106562664 other upstream 2986780 15441455 ~ 15446492 (+)
LOC120556271 tmem138,LOC104922799,LOC102296598,LOC102204478,LOC104956289,LOC103368539,LOC102790175,LOC102222702 other upstream 3379650 15047877 ~ 15053622 (+)
kcna4 kcna4 other upstream 3468210 14889390 ~ 14965062 (+)
LOC120556478 LOC103360749,LOC104942123,LOC102301404 other downstream 122433 18561873 ~ 18575942 (+)
LOC120555697 NA other downstream 634868 19074308 ~ 19087064 (+)
G28581 NA other downstream 1047806 19487246 ~ 19487533 (+)
ercc3 ercc3 other downstream 1072916 19512356 ~ 19520218 (+)
LOC120555792 pcdh9,LOC102784100 other downstream 1332679 19772119 ~ 19993954 (+)

Expression


Co-expression Network