mrpl46 (mrpl46)


Basic Information

Item Value
gene id mrpl46
gene name mrpl46
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 1021963 ~ 1030055 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039794677.1
CTACCATGGTGAAAACTCGCTTGAAGCCCTTAAGCAAAGATCCTCTATACTAAACCGACTCTGCCTCAAGTAACACTCAATCTGCCCCATGCTTAGATAAAGGACAACACTTTATATCGGAAACTggggttcatgtttttgtcttcTGGTATCACCGAGGGAATAACGTGGTTGAAAATCCCTCCTCCAGCCTGTTTTGCCGCCGTCGGGACTTTTTTGCATATACATTGAATGTAGCAGAAAAAGATGTCTGCTCCCTGTAGAAGGATGGCTCCTCGGTCTCTCTTCCAGTTGCTGTCTTTCAGTCGGACAGCGGGCGGGAGCTCGGCCTTTCGTCCGTTTTCCCGCAGCGCGTGTGTTCGTCGGGCGACTATGCAGGCCAAAAGTGTGACGGAAAAGGCGAGTTCTCCGTGGACTTTGATGGCAGCCGTGTGTCTGCAAAGACTCCCGGTCATCTCCGCGGACTGCGGCCCGCTAGAGCGCCGCTTCACCGACCTCATGCTCCAGCTTGAGTTGGAGAAAAGCTTGCTGTCGGACCACGAGCTGCGGCTGCTGGAGGACGCTGAGAGGATGAGTCGGAAGCAGGCAGACGACTATGATTCGGATGAAGAGGGCGAGCGTGGGGACCAGGAGATCGTGTTGGCTCAGGACCTGGAAGACTCCTGGGAGCAGAAGCTGAAGAGCTTCCAGCCAGCGCTGAGGGTCACGGCTGATGCAGATAAGGACTTGACCTCGTTGGAGCGCTGCCTGGCCAACTCGCTGCTTCTCTTGGCCGAGCAGAAGGTCGGGGGTGAGAAGCTGTGGCTGCTGCCTCAGACTCCGTGGCAGGAAGGAGAAACGCTGCGGCAGACAGCCGAGAGAGCCCTCACTTCCCTGCCAGCAGCTGGTTTCAAGGCGACTTTCCTCGGCAACGCCCCCTGTGGAGTGTACAAGTACAAACTGCCCAAAGCTGCTCGGACGGAGAGCTCGGTCGGAACAAAGGTGTTCTTCTTCAAAGCCATTCTGTCAGACAGCGGCCCCCCCGCAGCCCCAAACGCTCCTTTTCTGTGGGTGAAGAAGAATGAACTGCAGCGCTACCTGAAACCAGCATACATGATGAAGGTTGACCGCTTCATCCTCGACCTGTGACGCCGACGTACAGAACAATATTTATGAGGCCCAGAAAGTTACCGTTGTTGCTTATCCTGTCGTCTTGTATCCTAAAATGTTCTTTCATTCAATATGTGttgtataaataaatagttttttttccata
>XM_039794678.1
CTACCATGGTGAAAACTCGCTTGAAGCCCTTAAGCAAAGATCCTCTATACTAAACCGACTCTGCCTCAAGTAACACTCAATCTGCCCCATGCTTAGATAAAGGACAACACTTTATATCGGAAACTggggttcatgtttttgtcttcTGGTATCACCGAGGGAATAACGTGGTTGAAAATCCCTCCTCCAGCCTGTTTTGCCGCCGTCGGGACTTTTTTGCATATACATTGAATGTAGCAGAAAAAGATGTCTGCTCCCTGTAGAAGGATGGCTCCTCGGTCTCTCTTCCAGTTGCTGTCTTTCAGTCGGACAGCGGGCGGGAGCTCGGCCTTTCGTCCGTTTTCCCGCAGCGCGTGTGTTCGTCGGGCGACTATGCAGGCCAAAAGTGTGACGGAAAAGGCGAGTTCTCCGTGGACTTTGATGGCAGCCGTGTGTCTGCAAAGACTCCCGGTCATCTCCGCGGACTGCGGCCCGCTAGAGCGCCGCTTCACCGACCTCATGCTCCAGCTTGAGTTGGAGAAAAGCTTGCTGTCGGACCACGAGCTGCGGCTGCTGGAGGACGCTGAGAGGATGAGTCGGAAGCAGGCAGACGACTATGATTCGGATGAAGAGGGCGAGCGTGGGGACCAGGAGATCGTGTTGGCTCAGGACCTGGAAGACTCCTGGGAGCAGAAGCTGAAGAGCTTCCAGCCAGCGCTGAGGGTCACGGCTGATGCAGATAAGGACTTGACCTCGTTGGAGCGCTGCCTGGCCAACTCGCTGCTTCTCTTGGCCGAGCAGAAGGTCGGGGGTGAGAAGCTGTGGCTGCTGCCTCAGACTCCGTGGCAGGAAGGAGAAACGCTGCGGCAGACAGCCGAGAGAGCCCTCACTTCCCTGCCAGCTGGTTTCAAGGCGACTTTCCTCGGCAACGCCCCCTGTGGAGTGTACAAGTACAAACTGCCCAAAGCTGCTCGGACGGAGAGCTCGGTCGGAACAAAGGTGTTCTTCTTCAAAGCCATTCTGTCAGACAGCGGCCCCCCCGCAGCCCCAAACGCTCCTTTTCTGTGGGTGAAGAAGAATGAACTGCAGCGCTACCTGAAACCAGCATACATGATGAAGGTTGACCGCTTCATCCTCGACCTGTGACGCCGACGTACAGAACAATATTTATGAGGCCCAGAAAGTTACCGTTGTTGCTTATCCTGTCGTCTTGTATCCTAAAATGTTCTTTCATTCAATATGTGttgtataaataaatagttttttttccata

Function

symbol description
mrpl46 Predicted to be a structural constituent of ribosome. Predicted to be located in mitochondrion and ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Orthologous to human MRPL46 (mitochondrial ribosomal protein L46).

NR:

description
PREDICTED: 39S ribosomal protein L46, mitochondrial

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K17427 MRPL46; large subunit ribosomal protein L46

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039794677.1 True 1255 mRNA 0.54 4 1021963 1030055
XM_039794678.1 False 1252 mRNA 0.54 4 1021963 1030055

Neighbor

gene id symbol gene type direction distance location
sv2ba LOC103359500,LOC101162590,LOC101062552 coding downstream 695235 301918 ~ 326728 (-)
mespba LOC103359507 coding downstream 725676 293684 ~ 296287 (-)
mespaa LOC101162828 coding downstream 731588 289261 ~ 290375 (-)
igf1rb LOC103359504,LOC104920736 coding downstream 788369 173297 ~ 233594 (-)
lrrc28 lrrc28 coding downstream 854448 160255 ~ 167515 (-)
pdpr pdpr coding upstream 7700 1037755 ~ 1056294 (-)
LOC120556384 LOC104919714 coding upstream 146407 1176462 ~ 1190886 (-)
tdp1 tdp1 coding upstream 162985 1193040 ~ 1203082 (-)
LOC120555617 NA coding upstream 429109 1459164 ~ 1507908 (-)
rhpn2 rhpn2 coding upstream 714137 1744192 ~ 1774421 (-)
G24895 NA non-coding downstream 89170 932258 ~ 932793 (-)
G24881 NA non-coding downstream 247264 765212 ~ 774699 (-)
G24880 NA non-coding downstream 286686 730918 ~ 735277 (-)
G24864 NA non-coding downstream 430613 591011 ~ 591350 (-)
G24862 NA non-coding downstream 435619 586032 ~ 586344 (-)
G24914 NA non-coding upstream 317 1030372 ~ 1032602 (-)
G24931 NA non-coding upstream 103464 1133519 ~ 1133789 (-)
G24934 NA non-coding upstream 120173 1150228 ~ 1150957 (-)
G24935 NA non-coding upstream 120967 1151022 ~ 1151337 (-)
G24942 NA non-coding upstream 135607 1165662 ~ 1169759 (-)
ntrk3b NA other downstream 100414 706157 ~ 921549 (-)
pnoca NA other upstream 31049 1061104 ~ 1105167 (-)
LOC120555898 mctp2 other upstream 380619 1410674 ~ 1457108 (-)
LOC120556048 abcc12,LOC101479372,LOC101076737,LOC102203605,LOC100701509,LOC102304683 other upstream 480110 1510165 ~ 1555646 (-)
LOC120556047 abcc12,LOC102304683,LOC101479372,LOC102203605 other upstream 557489 1587544 ~ 1642348 (-)
cep89 NA other upstream 634715 1664770 ~ 1740839 (-)

Expression


Co-expression Network