mrps11 (LOC107594750)


Basic Information

Item Value
gene id mrps11
gene name LOC107594750
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 1030354 ~ 1037493 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039794679.1
CCTCTGCATTTACAGCACCTTCAATGTCACATTTGTTGTGTGTAAAGAAGCTGGATGTCTGACAGcgaatttgttttttaaacctaTCAAACATGTATAAACTAAATTGTATATCAGTTAGTTCTGTGGGCAACGTATGCCGACAGCTTGCTGCCTCCCTAAATGCAAATGGTAGTTCTCTGTGTGGAAGCTCTGAGCTGCAGCGGACACTGTGTACCGGTGCTGTCCGACTTCAGGAGACCGTAGCATCCGCCACAGAGTCTGGGAAATCCTCCAGAGACTCCAGCCATTTTCCTCCACTGCCTGGCCAGGAAAGTTCACTGAGATGGGGTGGAAAGAAGTTTGAGGAGTTACCAATCGCTCACATTAAAGCCACATACAACAACACACACATCCAGCTGACAGAGAGCACAGGACAGTCGCTTGTCAGGACGTCCTGCGGAACTGAAGGCTTCAAGAACATCAAGAAGTCTACGCCCATCGCTGCTCAGACTGCCGGCATCTCTGCTGCTGCGAAAGCCACAGCCAAGGGCGTGACGTTTGTCCGTGTCGTGGTCAAAGGCCTTGGCCCTGGACGTCAGTCTGCGATCAAAGGCTTGACAATGGGAGGCCTGGAGGTGGTATCGATCACCGACAACACCCCCGTGCCGCACAACGGATGCCGCCCACGCAAAGCCAGAAGGACGTGATCTCCGCGAACCAGAATGCACTGCAGCAGGAGGAAGCGGTTGTTGTTGTAATATGCTAATAAAGTGTTTTGTTGTTACATAA

Function

NR:

description
PREDICTED: 28S ribosomal protein S11, mitochondrial-like

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02948 RP-S11, MRPS11, rpsK; small subunit ribosomal protein S11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039794679.1 True 771 mRNA 0.51 6 1030354 1037493

Neighbor

gene id symbol gene type direction distance location
LOC120556381 akap13,LOC103359499,LOC102788190 coding upstream 559624 349112 ~ 470730 (+)
LOC120555942 NA coding upstream 742031 278096 ~ 288323 (+)
LOC120555941 LOC103359503,LOC100696673 coding upstream 754257 251471 ~ 276097 (+)
ap3s2 ap3s2,LOC102235539,LOC107654134 coding upstream 779125 237102 ~ 251229 (+)
LOC120555932 NA coding upstream 935815 88088 ~ 94539 (+)
kif13ba LOC103358451,LOC107099140,LOC107397337 coding downstream 66104 1103597 ~ 1163018 (+)
eprs1 eprs,LOC102787790 coding downstream 167001 1204494 ~ 1227658 (+)
glo1 glo1,LOC103369175,LOC104919745 coding downstream 190924 1228417 ~ 1240457 (+)
LOC120555232 NA coding downstream 209392 1246885 ~ 1251901 (+)
LOC120555381 LOC102205592,LOC102787001,LOC102297232,LOC101476278,LOC100534518 coding downstream 225457 1262950 ~ 1269003 (+)
G24890 NA non-coding upstream 83294 946797 ~ 947060 (+)
LOC120555975 NA non-coding upstream 255656 765198 ~ 774698 (+)
G24866 NA non-coding upstream 333770 695992 ~ 696584 (+)
G24858 NA non-coding upstream 479966 550098 ~ 550388 (+)
G24857 NA non-coding upstream 492222 537689 ~ 538132 (+)
G24923 NA non-coding downstream 96568 1134061 ~ 1134602 (+)
G24918 NA non-coding downstream 128156 1165649 ~ 1169695 (+)
G24920 LOC104919714 non-coding downstream 137833 1175326 ~ 1178181 (+)
G24926 hmbox1,LOC104919714 non-coding downstream 147232 1184725 ~ 1185227 (+)
G24972 NA non-coding downstream 215704 1253197 ~ 1254591 (+)
mapk8ip1b mapk8ip1,LOC102793463 other upstream 945928 11843 ~ 84426 (+)
G25173 dnaja2,LOC106524269 other downstream 801840 1839333 ~ 1842811 (+)
G25204 NA other downstream 1044465 2081958 ~ 2083319 (+)
adamts18 adamts18 other downstream 1202921 2240414 ~ 2312157 (+)
mmp15b mmp15,LOC104948393 other downstream 2443804 3481297 ~ 3518086 (+)
G25431 NA other downstream 2747440 3784933 ~ 3785542 (+)

Expression


Co-expression Network