cmtm4 (cmtm4)


Basic Information

Item Value
gene id cmtm4
gene name cmtm4
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 22489512 ~ 22507555 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039794748.1
gaaaacagaaacaatGCCATCAGGCCTGACTGGAGGTAGGCTATGCAGGCTGCAGAGGCATACCGACGATGAGAAAGGACCAGGACAGTAGAGGAGGCAGACAAATGCAGCAGAGCCCGGTCCTGTCGCCGTGGTTCCGGCTGGATTCGCTTTGCAGACTGTTTGGGAATACTTAAAAGGGGCGCAGAGCCTACACAAGAATGTGCAGTTTTCAGAGGGGCGGAGACAAGCTTGCCTCGCATCCATAGCGAGTAAAAGCGGCGTCCGGGCAGCCTCACTGCGGGCTGCTGTTAGAGACTAGCCTATAAGTTTACAATAGGAAACAATAAGGTTCTCTCTCGGTTCTTCTGGGCCATAATGGGTGGATGTTTTTCAACCGCAGAGACGAGTCACACAGCCGGGTaggcatatttttttttgttgttgttcggTGCTGCTGTAACGTTAACCAGAATCGTCCATGGTGAAGTGACCCTGGGTTTCGAACAAGTGACCCGCCTAAACCCAGTTAGAAGTGCTTAGAGAGACGCAACATTGCAACCGGGACGAAAACTGCGCAGGGTTACATTAAACGGATCCCAGCCTGATCTCCCCTGCGCGCAATGATAAAGAGCACCCTCCGCGGCTGTTTCCCCGTGGGGTGGCTGTGAAAAGTGGACAGTctggtttgttttctccatccACTTCCAGCCTGCATGGAACAAAGTGTGCTTTCTGAAGCATAACCTGCGCCCGTGAGGTGGATCCAGGCGGTTTGTCAGCTTGGGTTTATATGTCGCAACAGCGCTAGGCGAGAGTCCAGACCAGCTTCTCCCGATCAATCATCATGAGGACCACCGAGGAGACTGAGGGCTTTGACGGCGAGGCCTCCAACACTTCCATGATCTCCGGGGCCAGCAGTCCGTATCAACCCACCACCGAGCCCGTCCATTCAAGGAACGTTTTGGGGGGGATTAGGTGCGACATGGAGTACCTTAAGTCATACTTTGGGATTTTAAAGGCGGTTGAAGTGGTCCTATCACTTATTGGATTCATCTGCATAGAGACCATCATGATGTGTTCTCCCTGTGGGGGGGTGTACTTCTTCGAGTTTGTCAGTTGCAGTGCCTTCGTGGTGACAGGAGTCCTCCTCTTTATCTTCAGCCTCAACCTGCACACCAAGGTGCCCCATGTCAACTGGAGCCTCACGGACCTGGTTAACACGGCTGCCAgcaccttcttcttcttcttgtcgtCTCTTGTGTTGGCCTGCATCAACCACAACACTGGAGCTGAAATAGCAGCATTGATCTTCGGCTTCCTGGTGACATGTGTGTATGGAGTTAACACCTACCTGGCGGTACGGAGGTGGCGCCGTGGCAATGGGTGTCAGGGGGCGGCCCAGACCAGCGAGTACATACGAGCACGCACGGCATCTCGTGGAGAAATGGAGGCAAGACCTGAACTTGGATGAGTGCTGGCAGAGAATCAGACTGAAAGGAAAGCCACACTACCGGCAGCTGACTGAGATTGACTCTGCCCTCAGAACAGTATTTCATTCAAGTCTTGAGTGCAAGGGCCATCTCAAGCTCACCACATGCTTTTGACTTCTCCTCACCTCAGCTGTGCTTTCTGCCCGCCCAGCCACTGAATAAATGTTCATTTCATAGCCACAGATGAGTTCTGTGGCTTTGTTTATCAGGCATCCTGGCTTCAGTGACACATGAAGACTCTAAAGTGAAGAGCTCCAGTCACAATTGAAGGTATTCTCTGTAAAACCTTTCACCCACGTACCTTTCTAGGTCAGTATGAATAATGACTTCCACAAAGAGCCCCAAAAAAAGGCTGACCTTACTCCAACTGTGCACTAACTCCTGCTTTGGCGTAGGtgttgacttttttatttttattattttagaaaGTTTTCACTGTGAATGAAGTCGAGTTACAGAAGGTTTGTACAGTTTGCTTATTTCACGCCGCTGTCTGTGAACTCTGTGGTAATAACTGTGACCTGTGAGCAAAACCGACATGAGATATTTTAATCTAAAGATTCTACATGCTGACATGTTTGTTTCCCCTTCGCCGCTATTAAGCTCCCTGCTGCCAACAGTTAAATACAGTAACAGTACAGGGTCGTTCTTTGTCAACTGCAGTGAAGACAGGCAGCACAACATAAGGTCAACATTTGGAAATGAGTGCTAAAAGATCTTCTTGGCAACACAAATCCATCCAGTGGGTTTGCCACAATAAAGAGaccaatgtaaaaatgtattttgtatcCCAGGTTGTGTATAAACTATTCAAATGATATTCACACTAGCATTCCTAAGATTTTAATTTCGAGGTGTGTTAGGTCAACACTGTGAGACAGGAGTAGGTTGTATCACGCGATGATCGTAATTGGTATCTTGTTACctttgcacatactgtatccAAGGCTTCAGGTTACACAAATGTTGACGGTACATCAGTGAGACTAATTTTGAAACAAACATCAGTAGATGCCCTTTAGCCCATAGACTGTATCTCAGGTATTGACACACTCCTTTCATCTTttgattcttaaaaaaaaaaaaaaagcatttcaaaTAAAATCACAGGGTGCCTCTGTTGAACGTTGTATTTCTTAAGGCCTTCCAAATTATTAGACATGATAGGACTATCATAAAGAATGGAAATTAACTGAgaaaatgaatttaaaaaaggaagagtCAAGTGAAGGTGAAGGCGGTGGGATGGGAATACAGCACTTTCAGCATTATTGTCACAGCTTTCACTCTATTTggttgcattaaaatgtctgcatatgtatctacagtatattatcAGACTTCATGTATTATGAAATCTCTATCATTCCACATTGCATCTGTTATAAGGCTCATGCAGACAGCGCAAAACAGATTTGTCATtccttcaatgtttttttctgttcgGACAGTGTAACTAGGCTTAAGCTTAAAACATCACATCTTATTTGCTTTTTATGATGAAGGAAGAAATGTCAACTTAATTGTTGGTGTCTTACATTGCTCTAATGTATTGAATTTACACTACAGTTACACGTGTATGTTTTCTATGTTGTTTGAGACCTTTATGTATATTAGCTTTGGGTGAGTTTGTGCATGGTCTAACTGACTATCTGACTCTATGGCTCCATCTCCTGGTCATCTAAAATATATTCCTCCAGAGGACTGTACAGCCAGATAACTACAGTAGTGTGTGTATAAGAGAAGGACCATACATGTTTGAATGTGGgttgaaatgaaaaataaaaactatggcTTCTTAAA

Function

symbol description
cmtm4 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human CMTM4 (CKLF like MARVEL transmembrane domain containing 4).

NR:

description
CKLF-like MARVEL transmembrane domain-containing protein 4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039794748.1 True 3275 mRNA 0.45 4 22489512 22507555

Neighbor

gene id symbol gene type direction distance location
dync1li2 dync1li2 coding upstream 1133 22471509 ~ 22488379 (+)
nae1 nae1 coding upstream 49139 22433511 ~ 22440373 (+)
cdh16 cdh16 coding upstream 81802 22369351 ~ 22407710 (+)
rrad rrad coding upstream 112372 22374134 ~ 22377140 (+)
lmo7b NA coding upstream 262406 22189896 ~ 22227106 (+)
trappc2l trappc2l coding downstream 31725 22539280 ~ 22542996 (+)
trnag-ucc_7 NA coding downstream 39646 22547201 ~ 22547272 (+)
acsf3 acsf3 coding downstream 162349 22669904 ~ 22711934 (+)
cdh15 cdh15 coding downstream 205745 22713300 ~ 22751941 (+)
slc22a31 slc22a31 coding downstream 388787 22896342 ~ 22911278 (+)
G29101 NA non-coding upstream 81273 22407966 ~ 22408239 (+)
G29085 NA non-coding upstream 121009 22368129 ~ 22368503 (+)
LOC120556188 NA non-coding upstream 328617 22159570 ~ 22160895 (+)
G29005 NA non-coding upstream 359934 22128964 ~ 22129578 (+)
G29004 NA non-coding upstream 405111 22083945 ~ 22084401 (+)
G29135 galns non-coding downstream 26387 22533942 ~ 22534868 (+)
G29139 NA non-coding downstream 41145 22548700 ~ 22601559 (+)
G29176 NA non-coding downstream 244913 22752468 ~ 22753645 (+)
G29241 ist1 non-coding downstream 490147 22997702 ~ 23001049 (+)
G29243 mphosph10 non-coding downstream 497323 23004878 ~ 23007982 (+)
gpc5a gpc5,LOC103365231 other upstream 617487 21720034 ~ 21872025 (+)
dcun1d2b dcun1d2,LOC102792160 other upstream 885606 21596331 ~ 21603906 (+)
tpp2 tpp2 other upstream 926698 21525592 ~ 21562814 (+)
grk1a grk1 other upstream 1056365 21421110 ~ 21433147 (+)
G28826 NA other upstream 1086062 21396213 ~ 21403450 (+)
ankrd11 ankrd11 other downstream 257164 22764719 ~ 22895007 (+)
LOC120555548 LOC103365626,LOC104942698 other downstream 474228 22981783 ~ 22994164 (+)
G29292 NA other downstream 629177 23136732 ~ 23137027 (+)
igdcc3 igdcc3 other downstream 935594 23443149 ~ 23517263 (+)
G29433 NA other downstream 1219457 23727012 ~ 23732471 (+)

Expression


Co-expression Network