dkk3a (dkk3)


Basic Information

Item Value
gene id dkk3a
gene name dkk3
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 25805445 ~ 25810504 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039794803.1
CATCACTGCCACACCCTTGTcgagtgcagcagcagcagcagcagcagaagcagcatgATGCGAGTCGCCCTGCTAGTTTTGGCTCTCACTGCAGTCTGCAATGGCATCCTCCCTGAGATAGTGGATTTAGGCATCAGTCACATCCTGGAGGATGATTCCTCCCAGGGACAAACGGAGCTGGACCGCACGTTTGTGAAAGTGGAGCAACTGCCAGAGGATCCGCAGCAAAAGCCCGAGGATGCGTTTCACCAAAGGAACAACGAGAGTGTAAATCTCAGCCCTCACCCCAATAATCTTCCTGCAAGTCAACATCACAATGAAACTACTtctgataaagtgattgatAACGAATCTGCCCAGACTTCAGCAGAACAGGAGACAAACAACATTACCACAGCCGTCCAGTCCAGTGACCTGGAGAACAATATTGATTATggatGCATTGCTGATGAGGACTGTGGGAAGGGCAGGTATTGCCTTTATGACAAGCGCAACTCCAAGTGTCTGCCTTGCAAAGAAATCGATATGTCCTGCACTAAGGATAAGGAGTGCTGTGGTGATCAGCTGTGTGTATGGGGACAGTGCAGTCTAAATGCAGCCAAAGGAGAGGCTGGCAGCACTTGTCAGTACCAGACTGACTGCAGCCCAGACCTCTGCTGTCTTCTCCACAAAGCCCTGCTCTTCCCTGTCTGCTCGGCCAAGCCCATTGAGCGTGAGCGCTGTTTTGGTGCCTCCAACCACCTGTTGGAGCTGTTGTCCTGGGACATTCAGGACAAGGGACCCAGGAAACATTGCCCCTGTGCAGGAGATCTTCACTGCCAGCACCTGGGACGAGGGTCCATGTGCCTTAAAGGAGAGGACTCGAGTGAAGAGgaccagacagacagtctaTACTCCGAGATAGACTATATCATCTAGACACAGCGTGATTGGATTCACATTACCTTGTAAACAACTAGACAGGGGTCTCTATTGACTCCAGAGCTTCGTCGCAAAGAACAATAGCACTTTCTGTTTGTGAATATCTGTTGACTACTCACCTCACTGTTGTCGCTGCATCACCTACAGCATCAGCTGATGCTAGGTTGAGTAGCAGCACTGCATCATCTTAATAAAGTGAGACCAAAATAGAACAAAGTCACCACCCAGTTTGCAGTCCCACTGCAATTACTATGCACCAGGTAGAAAAATAACCCAGATACAATCAGGCTTAATGCAATGCACGATCAATAAAACGCGTATCGCAGAAGCAGACAATAATGAATGATGTTTAGGCTTCCAAGACTCCCCTCGACATCAGACACATATTCATCTACAGGAAACACTACCATGAGAGGTCAGCAGACTTTGTCAGTCATAGTCATCTAGGAAGCTCATTTGCATCCTTATACATGTCTGATAAAATCTCAGTTTGTTTAAGAGTAAATCTAATTCTAGCTGCTTTAATAGTTGTTCGTAAagctttttcttcttcacttttCCTCGTTATTCCTGAGAAAATGTTTTGGCAAACCTTGTTGATTGATCCTAGCAATATCTGCTCTGCTCCAAGTACTGTAATGTTTTTGCCAAGATCTAGGCCTCAACATGTTTATGGTACCGAGATGACATGTTATCACATGCACCACAAGAGGAAACACTGTCCAATAtgccatgttgtgatttattcTATCTATATTGTTATGTAcggggtatatatatatataaataatattatgtAATGTGCTTTTTCTTTCACACGTTACATATATTACTTATTTCAATTGTCCACTTTTTGCCTTTCAAGCAGTATCTTACAACAACATATCAGAAAATATTAGATGTACGACCAAAACAGTAGCTTATTTGACTAATCTAATCTTGAATTCTTCTATAGTTTATACATGTACATTATTATAAAACTTGGACCTTGTATGCAAATTGAACAAATATCAAAATCTATAAATGGTATAACGAACCTTTATTTTTGTATACCTAATTAAATATCACTAGCATGTCACTAGATTTCTGCTTGGAGCGATAATCATCTGATGCAAGTTTTCATTTGTCAGAGTTTTTACACCTGCATTACATCCAGGCAGGAAGGTACCATATGAATGCAAGCAATACCTGATGTATGTGTGAATATAGCTTTTGTACTAGCAACTTGTGCTAGATGTTAACTTACATGCAGCTACAACTGTCAAATATAACCTCTGCACTGTTCTTTAGCACTTGAATCCTGACGTGCAGCTTGTACAACTCTTAAcctaaaaataaagtttttttttaaaaca

Function

symbol description
dkk3 Predicted to enable co-receptor binding activity and receptor antagonist activity. Involved in adrenal gland development; negative regulation of canonical Wnt signaling pathway; and negative regulation of cellular biosynthetic process. Predicted to be located in extracellular region. Predicted to be active in extracellular space.

NR:

description
dickkopf-related protein 3-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039794803.1 True 2276 mRNA 0.42 7 25805445 25810504

Neighbor

gene id symbol gene type direction distance location
btbd10b btbd10,LOC103362377 coding upstream 154832 25639529 ~ 25650613 (+)
ctr9 ctr9 coding upstream 388659 25407601 ~ 25416786 (+)
ampd3a LOC104930104 coding upstream 449592 25326246 ~ 25355853 (+)
adma NA coding upstream 469966 25332984 ~ 25335479 (+)
swap70a swap70,LOC104918979 coding upstream 590385 25202025 ~ 25215060 (+)
kars1 kars,LOC102775760 coding downstream 120772 25931276 ~ 25942831 (+)
gcshb gcsh coding downstream 143294 25953798 ~ 25957807 (+)
rpl13 rpl13 coding downstream 150414 25960918 ~ 25966638 (+)
LOC120556589 NA coding downstream 154175 25964679 ~ 25964758 (+)
LOC120556588 NA coding downstream 155673 25966177 ~ 25966255 (+)
G29868 NA non-coding upstream 117337 25685840 ~ 25688108 (+)
G29851 NA non-coding upstream 168320 25624948 ~ 25637125 (+)
G29849 NA non-coding upstream 182993 25622189 ~ 25622452 (+)
LOC120555969 NA non-coding upstream 231024 25570791 ~ 25574421 (+)
G29794 NA non-coding upstream 350306 25454668 ~ 25455139 (+)
G29915 NA non-coding downstream 51224 25861728 ~ 25862391 (+)
G29922 NA non-coding downstream 119243 25929747 ~ 25929973 (+)
G29964 NA non-coding downstream 194759 26005263 ~ 26006950 (+)
G29974 NA non-coding downstream 247424 26057928 ~ 26059434 (+)
G29975 LOC103361962,LOC107659108,LOC101069992,LOC107565377 non-coding downstream 250687 26061191 ~ 26063421 (+)
sox6 sox6,LOC103363464 other upstream 1349757 24320064 ~ 24455688 (+)
plekha7b NA other upstream 1490800 24235723 ~ 24314645 (+)
G29433 NA other upstream 2072974 23727012 ~ 23732471 (+)
igdcc3 igdcc3 other upstream 2288182 23443149 ~ 23517263 (+)
G29292 NA other upstream 2668418 23136732 ~ 23137027 (+)
pkd1l2a vat1l,pkd1l2,LOC102776808 other downstream 45335 25855839 ~ 25883360 (+)
nfat5b nfat5 other downstream 72950 25883454 ~ 25927726 (+)
LOC120556198 LOC103371916,LOC104965843 other downstream 1485253 27295757 ~ 27316181 (+)
nedd4a nedd4,LOC103371920,LOC102785817 other downstream 1507866 27318370 ~ 27351837 (+)
LOC120555577 NA other downstream 1598536 27409040 ~ 27410250 (+)

Expression


Co-expression Network