rpl13 (rpl13)


Basic Information

Item Value
gene id rpl13
gene name rpl13
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 25960918 ~ 25966638 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039794811.1
CTTTGATAACGTCTGTTCGGCCATTGGCTGGTTGACACATATCCCACAATCCTCCGCATTACAACTTCCTTTTTCCTTTCGGCCATTTTCCTTCCTAGTAGGGAAGAAGTAGGCAGCCATGGCCCCCAGCCGGAATGGAATGCTCCTGAATCCTCACTTCCACAAGGACTGGCAGAAAAGAGTGCGCACCTGGTTCAACCAGCCAGCCAGGAAGATCCGCAGGCGAAAGGCTCGTCAGGCTAAGGCCCGTCTCATCGCTCCCCGTCCTGTCGCTGGACCATTGAGGCCCCAGGTGAGGTGTCCCACAATCAGGTACCACACCAAGGTTCGTTCTGGACGTGGCTTCACTCTGGAGGAACTCAAGGCAGCTGGCATCCACAAAAAGACAGCCCGCACCATCGGCATCGCAGTTGACTCTCGCCGTCGCAACAGATCCACAGAATCTCTTCAGGCCAACGTGCAGCGTCTGAAGGAGTACCGCTCCAAGCTCATCCTGTTCCCCAGGAAGGCTTCTGCTCCCAAGAAGGGAGACAGCACTGAGGAGGAACTCAAGATGGCCACTCAGCTCGCTGGTCCAGTCATGCCCATCAAAACAGTGCACAAGAAGGAGAAGGCTCGGGTTATCTCGGAGGATGAGAAGAACTTCAAGGCTTTCGCCAGCCTGCGTATGGCCCGCGCCAATGCTCGTCTCTTTGGCATACGTGCCAAGAGGGCCAAAGAGGCTGCCGAGCAGGACGTGGAAAAGAAGAAGTGAAAATAGTCACTATGGAACTTTGcaaaataaagtgttaaaaaaga

Function

symbol description
rpl13 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Acts upstream of or within regulation of cell cycle. Predicted to be located in cytoplasm and ribosome. Predicted to be part of cytosolic large ribosomal subunit. Used to study spondyloepimetaphyseal dysplasia. Orthologous to human RPL13 (ribosomal protein L13).

NR:

description
PREDICTED: 60S ribosomal protein L13 isoform X1

GO:

id name namespace
GO:0051726 regulation of cell cycle biological_process
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02873 RP-L13e, RPL13; large subunit ribosomal protein L13e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039794811.1 True 798 mRNA 0.54 6 25960918 25966638

Neighbor

gene id symbol gene type direction distance location
gcshb gcsh coding upstream 3111 25953798 ~ 25957807 (+)
kars1 kars,LOC102775760 coding upstream 18087 25931276 ~ 25942831 (+)
dkk3a dkk3 coding upstream 150414 25805445 ~ 25810504 (+)
btbd10b btbd10,LOC103362377 coding upstream 310305 25639529 ~ 25650613 (+)
ctr9 ctr9 coding upstream 544132 25407601 ~ 25416786 (+)
cpne7 cpne7 coding downstream 5295 25971933 ~ 26003635 (+)
zgc:162592 LOC104919466,LOC102228142,LOC104964798,LOC103150715,LOC108251387,LOC106918128 coding downstream 84225 26050863 ~ 26054674 (+)
dhx38 dhx38 coding downstream 99229 26065867 ~ 26081611 (+)
hnf4b NA coding downstream 648184 26614822 ~ 26624049 (+)
marveld3 marveld3,LOC103375894 coding downstream 733201 26699839 ~ 26702356 (+)
G29922 NA non-coding upstream 30945 25929747 ~ 25929973 (+)
G29915 NA non-coding upstream 98527 25861728 ~ 25862391 (+)
G29868 NA non-coding upstream 272810 25685840 ~ 25688108 (+)
G29851 NA non-coding upstream 323793 25624948 ~ 25637125 (+)
G29849 NA non-coding upstream 338466 25622189 ~ 25622452 (+)
G29964 NA non-coding downstream 38625 26005263 ~ 26006950 (+)
G29974 NA non-coding downstream 91290 26057928 ~ 26059434 (+)
G29975 LOC103361962,LOC107659108,LOC101069992,LOC107565377 non-coding downstream 94553 26061191 ~ 26063421 (+)
G30003 NA non-coding downstream 151527 26118165 ~ 26118521 (+)
G30006 NA non-coding downstream 197938 26164576 ~ 26164930 (+)
nfat5b nfat5 other upstream 33192 25883454 ~ 25927726 (+)
pkd1l2a vat1l,pkd1l2,LOC102776808 other upstream 77558 25855839 ~ 25883360 (+)
sox6 sox6,LOC103363464 other upstream 1505230 24320064 ~ 24455688 (+)
plekha7b NA other upstream 1646273 24235723 ~ 24314645 (+)
G29433 NA other upstream 2228447 23727012 ~ 23732471 (+)
LOC120556198 LOC103371916,LOC104965843 other downstream 1329119 27295757 ~ 27316181 (+)
nedd4a nedd4,LOC103371920,LOC102785817 other downstream 1351732 27318370 ~ 27351837 (+)
LOC120555577 NA other downstream 1442402 27409040 ~ 27410250 (+)
vrk3 NA other downstream 1459650 27426288 ~ 27440414 (+)
LOC120555924 LOC103398348,LOC104965831,LOC103374185 other downstream 1489778 27456416 ~ 27464759 (+)

Expression


Co-expression Network