LOC120555807 (sccpdh)


Basic Information

Item Value
gene id LOC120555807
gene name sccpdh
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 30965102 ~ 30974214 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039794894.1
AAAGCGCTGTCAAAACTGCACGCACTCAGTGctctctctgtcagtctgtGAGGTGAAGGTATCGCAGCGTATTTGCAGTGACTATGGCGCGTGTTGAAACATCCTCTAGTAGGCCATACCACCTGGTTATCTTCGGAGCCTCTGGCTTTACGGGACAGTTCGTGGTGGAGGAGGTGGCCCGGACCGCGTCCGAGGGTCCGAAAGGCAACCTGAAGTGGGCCGTGGCAGGCAGGAGCAAGCAGAAGCTGGAAAAAGTTCTGGAGCAGGCCGCCGGAGTCCTCAGTAAGCCTGAGCTGAGGTCAGAGGTGGACATTATCGTGGCAGATGTAGAAGAACCAGACTCCCTGGCAGCCATGTGCAAACAAGCTGTGGTTGTTCTCAACTGTGTGGGGCCTtACAGGTTCTATGGCGAGCCAATGGTCAAAGCCTGTGTGGAGAATGGAGCCCATCATATTGACATTAGTGGAGAGCCTCAGTTTCTGGAGAGCATGCAGTTGAACTACAACAGCCAGGCAGCTGACAAAGGTGTGTACATCATAGGGAGCTGTGGATTCGACTCCATACCTGCGGACATGGGAGTCCTCTACACCAGGGACCAGTTCAAGGGTACGCTGACTGCAGTGGAGAGCTTCCTGACTATCGGCTCAGGAGAGGATGGCGGCTGTATCCATGACGGCACGTGGCAGTCAGCCATCTACGGTTTTTCCGACAGCCAGAAGCTCCAGAGTCTCAGGAGGAAGTTTAATCACAAACCTCTCCCTACTGTTGGCTCTAAGCTTAGACGCAGgGGAACTTTGTTCTTCAGTAATGAGATCCAGCAGTATACGGTGCCGTTCATGGGCTCCGATCCCTCGGTTGTGAAGAGAACTCAACGCTTCCTGGTGGACGAGTACCAGGCCAAACCGGTTCAGTATGGAGCGTATGCAGGAATAGGAGGTATTAGCAACATTGTCAAGCTGATGTTTGCTGGCATGATGTTCTGGTTCTTGGTCAAGTTCAGTTTTGGACGCAACTTGCTCATCAAGCACCCAGAGTTCTTCTCCTTTGGACTCTTCTCCAAGGCTGGACCAACTAGAAAGCAGATGGAGGCTTCATCCTTCCAGTTTGCTTTCTATGGAGAGGGCTACACAGAGGGACAGGACCCCTCCCAGGGAAAACCTAATGCCAAGATCCGCACACTGGTTCAGGGACCAGAGTGTGGATACGTGGCCACGCCCATCGCCATGGTACAGGCTGCTCTAACAATCCTCAATGAACCCACAGCCTTGCCCAAGACGGGAGGAGTTTATACTCCAGGAGCTGCTTTTGCAAAAACCACACTGACGGACCGCCTCAACAAACACGGCATCCAGTTCTCTGTCGTCTAAAGTTTAACCCCCTACCTGATGCCATACTCCAGGTTTTTCTCAGCACTTACTCATTAATATGCATTATAACAACTGGAAAGTTTCCAATTTTTGAAGAGAGCTATTTCATTGCGAGGTCCTTGACTGGAGATGAAGTGCACTTTCAGATTGCATTCTAACACCATTTTTGATTGTACTTTTTGCATTTATCTTTTCAATTTGTTCATAAACTTGCTTGTCCCCCAATCGGCTTGAATGTACTGTTAACCCTCTGCTTGTTAGAGAAATGGCCCTTCTGCAGCAGAATTTCCCAGCCAAGGACCGTAAAACCAGTTAAGTGTAAATGGGTTAAACATGAACTACCATTAACATAATTACTGCTAATGAAAGAAGCAtttagattgattgattgattcacTTTATATAATTGTAAGTCATATTTGTACCTAATTGGACAGAAATGATTTATAAAAGTCTGTGCACTATCaggcgagagagagaagagaaaacgTGTAGAATGCACTTTTATCATACCAAAGAATGGTTGGTGGCATTTTGCACGGAAATTAAATTGTGATCTAACAGTGTATTTATCACACTGACCTTTGTGATGCAGTGTATATGGTAATTACCTACACAGGAATGGAGAGCTAGACAGCAAATCACACGTTCTCTTGACGACCCGGGTTATTAAATAGCAACAGTATAGCGGGCTGATAGCCTTATAGTAATACATCTAATGATTATGGACCGTATTACCCCTGGCAGGATTGAGGATTAGTAAAGTAATTTGAAATCCGTGATACAAATGTAGCAAACTATTAAATGGTCTACAATCTTTATAAGCGTTGTCCTTGTGACATACAGTAgctttgtgcttgtgtgtgtgtgcacgtgtacTTACATGCTTGCTGTCCCTTGCCAGTTAGCTAAAAATCCTGATTGCTTTGTTTTTGACAATTAACAGTTTGACTATCACTAAACCATCCTACAGTCTTGAATCTATATTCTTTGTAGCTGATTGTTGCAAAACTTCACCTATAGCAGTGTAAGAAAATGCATCCAGTTGTTCGTGCACAAAACTGTGTGAGTTACTCCATGTGACTGAACTGATCCTCTCTGCTGTTTTAACAagcgtgtttgtttttttgaagaAGTTTGTTGCTCCTCTGGACTGGAATTGTTTTTTGCCCCACAAATTGGTGATGTTTATTTCAGTCCTTGTTTTTCTCGTTGAGCATTATGTGCATGTGACAAGAAATGTTTTGGGTTTTGCTGTGCTTTGTTGTATGGGCCTCATAAATAAAACCAACtctaatagaaaaaaaaa

Function

symbol description
sccpdh Predicted to enable oxidoreductase activity. Predicted to be involved in glycolipid biosynthetic process. Located in lipid droplet and midbody.

NR:

description
PREDICTED: saccharopine dehydrogenase-like oxidoreductase

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039794894.1 True 2676 mRNA 0.45 12 30965102 30974214

Neighbor

gene id symbol gene type direction distance location
itsn2b LOC103371221 coding downstream 12508 30913371 ~ 30952594 (-)
eva1a LOC100700039,LOC103371220,LOC101476478 coding downstream 59433 30895477 ~ 30905669 (-)
xkr5b LOC103371226 coding downstream 71803 30878941 ~ 30893299 (-)
ctsba ctsb coding downstream 88391 30867774 ~ 30876711 (-)
adpgk2 LOC104966691,LOC103371218 coding downstream 97810 30855174 ~ 30867292 (-)
kif26ba NA coding upstream 131797 31106011 ~ 31190077 (-)
LOC120555709 LOC104940210,LOC100702483,LOC102196263,LOC101479845,LOC102293026 coding upstream 267426 31241640 ~ 31317621 (-)
LOC120555710 krtcap3,LOC104966904,LOC108237335 coding upstream 346652 31320866 ~ 31324349 (-)
ush2a ush2a coding upstream 387483 31361697 ~ 31595215 (-)
esrrga esrrg,LOC106523689,LOC107086944,LOC106950473,LOC101481777,LOC102790695,LOC107381220,LOC106909738,LOC102196825 coding upstream 633842 31608056 ~ 31783546 (-)
G31155 NA non-coding downstream 179874 30782410 ~ 30785228 (-)
G31150 NA non-coding downstream 195293 30769583 ~ 30769809 (-)
G31146 NA non-coding downstream 238748 30699403 ~ 30726354 (-)
G31110 NA non-coding downstream 379646 30569887 ~ 30585456 (-)
G31274 NA non-coding upstream 67334 31041548 ~ 31050491 (-)
G31278 NA non-coding upstream 128594 31102808 ~ 31103063 (-)
G31279 NA non-coding upstream 129556 31103770 ~ 31105588 (-)
G31304 NA non-coding upstream 253005 31227219 ~ 31229674 (-)
G31397 NA non-coding upstream 647002 31621216 ~ 31634058 (-)
fam120b fam120b,LOC104944276 other downstream 432960 30515255 ~ 30532142 (-)
LOC120556497 csmd1,LOC102783723 other downstream 999355 29617320 ~ 29965747 (-)
elp4 elp4,LOC103373817 other downstream 1503866 29402035 ~ 29461236 (-)
prrg4 NA other downstream 1650393 29310550 ~ 29314709 (-)
LOC120555471 hipk3 other downstream 1695919 29217853 ~ 29269183 (-)
cdc42se2 cdc42se2,LOC103398548 other upstream 1134358 32108572 ~ 32117250 (-)
G31602 ddx28,LOC106597432 other upstream 1917285 32891499 ~ 32894405 (-)
wdr76 frmd5,LOC103354945,LOC103374291 other upstream 2368033 33342247 ~ 33353448 (-)
znf710b LOC104936257,LOC102799163,LOC101477128 other upstream 2462597 33436811 ~ 33471335 (-)
serf2 NA other upstream 2592157 33566371 ~ 33569379 (-)

Expression


Co-expression Network