acta1b (acta1,LOC102689871,LOC100534413)


Basic Information

Item Value
gene id acta1b
gene name acta1,LOC102689871,LOC100534413
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 30661186 ~ 30665260 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039794904.1
GAGGTTGGGTATATAAGGTGGACGGGCAGTAGAGAAAATTGTAGCTGGTTCAGCAACAGCATTGGTTGGGTCTTTCTCTCAAAGCCGCAGACACCCCCCCTAAGAAGCCAACATGTGTGACGACGAGGAAACTACCGCCCTTGTGTGCGACAACGGCTCCGGTCTTGTAAAGGCTGGCTTCGCCGGAGACGATGCCCCCAGGGCCGTCTTCCCCTCCATCGTTGGCCGCCCCCGTCACCAGGGTGTCATGGTCGGTATGGGTCAGAAGGATTCCTACGTCGGCGACGAGGCCCAGAGCAAGAGGGGTATCCTGACTCTGAAGTACCCCATCGAGCACGGTATCATCACTAACTGGGACGACATGGAGAAGATCTGGCACCACACCTTCTACAACGAGCTGAGAGTTGCCCCCGAGGAGCACCCCACCCTGCTCACTGAAGCCCCCCTGAACCCCAAGGCCAACAGAGAGAAGATGACCCAGATCATGTTTGAGACCTTCAACGTCCCCGCCATGTATGTGGCCATCCAGGCTGTCCTGTCCCTGTACGCTTCCGGCCGTACCACCGGTATTGTGCTGGATGCTGGTGATGGTGTGACCCACAACGTCCCAGTCTATGAGGGTTACGCCCTGCCCCACGCCATCATGCGTCTGGACCTGGCTGGTCGCGATCTGACCGACTACCTGATGAAGATCCTTACTGAGCGTGGCTACTCTTTCGTGACCACCGCTGAGCGTGAGATCGTGCGCGACATCAAGGAGAAGCTTTGCTATGTGGCTCTGGACTTCGAGAATGAGATGGCTAccgctgcctcctcctcctccctggaGAAGAGCTACGAGCTTCCCGACGGTCAGGTCATCACCATCGGAAACGAGAGGTTCCGTTGCCCCGAGACCCTCTTCCAGCCTTCCTTCATTGGTATGGAGTCTGCTGGTATTCATGAGACCGCCTACAACAGCATCATGAAGTGCGACATTGACATCCGTAAGGATCTGTACGCCAACAATGTGCTCTCCGGTGGTACCACCATGTACCCTGGTATTGCTGACCGTATGCAGAAGGAGATCACTGCTCTGGCCCCCAGCACCATGAAGATCAAGATCATTGCCCCTCCCGAGAGGAAGTACTCCGTCTGGATCGGTGGCTCTATCCTGGCTTCCCTGTCTACCTTCCAGCAGATGTGGATCTCCAAGCAGGAGTACGACGAGGCAGGCCCCAGCATTGTCCACAGGAAGTGCTTCTAAATTCTCCATCTTTATCTCCAGCTTCTCCATCATTTACACCACCAGCTATCTGGAGATCAAGCGACAAGGAGAATCAGCATCTGCGGCACTGCAACACTCTGCTGTCAATGGACTTTCTGTCTGCGCTGTTGacatatgcattttttttttatcattttaaaatgtgcataTTTTGTAGTTTGTTGTCTGTGTTGCACGGAGAAAGGCTGTGAATCCACCACTGAACCATGCATCCACCCAAAAaacctttaataaaaaaaataagaacaaca

Function

symbol description
acta1 Predicted to enable ADP binding activity; ATP binding activity; and myosin binding activity. Predicted to be a structural constituent of cytoskeleton. Involved in skeletal muscle thin filament assembly. Located in actin filament; stress fiber; and striated muscle thin filament. Implicated in congenital fiber-type disproportion and nemaline myopathy 3.

NR:

description
actin, alpha skeletal muscle

GO:

id name namespace
GO:0036302 atrioventricular canal development biological_process
GO:0045471 response to ethanol biological_process
GO:0055003 cardiac myofibril assembly biological_process
GO:0055008 cardiac muscle tissue morphogenesis biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0042493 response to drug biological_process
GO:0030240 skeletal muscle thin filament assembly biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0003272 endocardial cushion formation biological_process
GO:0030049 muscle filament sliding biological_process
GO:0060048 cardiac muscle contraction biological_process
GO:0005829 cytosol cellular_component
GO:0070062 extracellular exosome cellular_component
GO:0031674 I band cellular_component
GO:0042643 obsolete actomyosin, actin portion cellular_component
GO:0017022 myosin binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
K12314 ACTC1; actin, alpha cardiac muscle

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039794904.1 True 1518 mRNA 0.54 7 30661186 30665260

Neighbor

gene id symbol gene type direction distance location
ccsapb NA coding downstream 1225 30654191 ~ 30659961 (-)
phf10 phf10 coding downstream 15161 30635173 ~ 30646025 (-)
psmb1 psmb1 coding downstream 26547 30631711 ~ 30634639 (-)
LOC120555751 tbp coding downstream 33861 30618857 ~ 30627325 (-)
rhoua rhou,LOC108237402,LOC107381884 coding downstream 50228 30606647 ~ 30610958 (-)
abcb10 abcb10,LOC102798660 coding upstream 4619 30669879 ~ 30685199 (-)
LOC120555418 LOC104920151,LOC107092146,LOC106958996,LOC106906464 coding upstream 150136 30815396 ~ 30827693 (-)
adpgk2 LOC104966691,LOC103371218 coding upstream 189914 30855174 ~ 30867292 (-)
ctsba ctsb coding upstream 202514 30867774 ~ 30876711 (-)
xkr5b LOC103371226 coding upstream 213681 30878941 ~ 30893299 (-)
G31110 NA non-coding downstream 75730 30569887 ~ 30585456 (-)
G31115 NA non-coding downstream 81882 30578286 ~ 30579304 (-)
G31027 LOC104955499,LOC103375803 non-coding downstream 236863 30421690 ~ 30424323 (-)
G31024 NA non-coding downstream 251130 30408105 ~ 30410056 (-)
G31013 hk1,LOC101156878,LOC107381906,LOC106513162,LOC102780719 non-coding downstream 317284 30343416 ~ 30343902 (-)
G31146 NA non-coding upstream 34143 30699403 ~ 30726354 (-)
G31150 NA non-coding upstream 104323 30769583 ~ 30769809 (-)
G31155 NA non-coding upstream 117150 30782410 ~ 30785228 (-)
G31274 NA non-coding upstream 376288 31041548 ~ 31050491 (-)
G31278 NA non-coding upstream 437548 31102808 ~ 31103063 (-)
fam120b fam120b,LOC104944276 other downstream 129044 30515255 ~ 30532142 (-)
LOC120556497 csmd1,LOC102783723 other downstream 695439 29617320 ~ 29965747 (-)
elp4 elp4,LOC103373817 other downstream 1199950 29402035 ~ 29461236 (-)
prrg4 NA other downstream 1346477 29310550 ~ 29314709 (-)
LOC120555471 hipk3 other downstream 1392003 29217853 ~ 29269183 (-)
cdc42se2 cdc42se2,LOC103398548 other upstream 1443312 32108572 ~ 32117250 (-)
G31602 ddx28,LOC106597432 other upstream 2226239 32891499 ~ 32894405 (-)
wdr76 frmd5,LOC103354945,LOC103374291 other upstream 2676987 33342247 ~ 33353448 (-)
znf710b LOC104936257,LOC102799163,LOC101477128 other upstream 2771551 33436811 ~ 33471335 (-)
serf2 NA other upstream 2901111 33566371 ~ 33569379 (-)

Expression


Co-expression Network